ClinVar Miner

Submissions for variant NM_182548.4(LHFPL5):c.250del (p.Pro83_Leu84insTer)

dbSNP: rs779841884
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute RCV000001762 SCV002766629 pathogenic Autosomal recessive nonsyndromic hearing loss 67 2020-05-21 criteria provided, single submitter clinical testing Based on the classification scheme VCGS_Germline_v1.1.1, this variant is classified as Pathogenic. Following criteria are met: 0102 - Loss-of-function is a known mechanism of disease for this gene. (N) 0106 - This gene is known to be associated with autosomal recessive disease. (N) 0201 - Variant is predicted to cause nonsense-mediated decay (NMD) and loss of protein (exon 1 of 4). (P) 0252 - Variant is homozygous. (N) 0304 - Variant is present in gnomAD <0.01 for a recessive condition (2 Heterozygotes, 0 Homozygotes). (P) 0703 - Comparable variants have moderate previous evidence for pathogenicity (LOVD, PMID: 30177809, PMID: 30298622) (P) 0802 - Moderate previous evidence of pathogenicity in unrelated individuals. (ClinVar, PMID: 16459341, PMID: 30177809) (P) 0901 - Strong evidence for segregation with disease (PMID: 16459341, PMID: 30177809) (P) 1007 - No published functional evidence has been identified for this variant. (N) 1208 - Inheritance information for this variant is not currently available. (N) Legend: (P) - Pathogenic, (N) - Neutral, (B) - Benign
OMIM RCV000001762 SCV000021918 pathogenic Autosomal recessive nonsyndromic hearing loss 67 2006-08-01 no assertion criteria provided literature only
University of Washington Center for Mendelian Genomics, University of Washington RCV001291454 SCV001479958 likely pathogenic Hearing loss, autosomal recessive no assertion criteria provided research

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