ClinVar Miner

Submissions for variant NM_182760.4(SUMF1):c.726-1G>C

dbSNP: rs1215549413
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001378446 SCV001576013 likely pathogenic Multiple sulfatase deficiency 2020-08-15 criteria provided, single submitter clinical testing This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with SUMF1-related conditions. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in SUMF1 are known to be pathogenic (PMID: 12757705, 12757706, 25885655). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This sequence change affects an acceptor splice site in intron 5 of the SUMF1 gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product.

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