ClinVar Miner

Submissions for variant NM_182961.4(SYNE1):c.13075T>C (p.Trp4359Arg)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute RCV004788413 SCV005400282 uncertain significance Emery-Dreifuss muscular dystrophy 4, autosomal dominant 2023-07-16 criteria provided, single submitter clinical testing Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as VUS-3B. Following criteria are met: 0102 - Loss of function is a known mechanism of disease in this gene and is associated with arthrogryposis multiplex congenita 3, myogenic type (MIM# 618484), Emery-Dreifuss muscular dystrophy 4 (MIM# 612998) and Spinocerebellar ataxia 8 (MIM#610743). (I) 0108 - This gene is associated with both recessive and dominant disease. Heterozygous variants result in Emery-Dreifuss muscular dystrophy 4 (MIM#612998), whereas biallelic variants can cause either myogenic type arthrogryposis multiplex congenita 3 (MIM#618484) or spinocerebellar ataxia 8 (MIM#610743). (I) 0200 - Variant is predicted to result in a missense amino acid change from tryptophan to arginine. (I) 0251 - This variant is heterozygous. (I) 0302 - Variant is present in gnomAD (v2) <0.001 for a dominant condition (1 heterozygote, 0 homozygotes). (SP) 0501 - Missense variant consistently predicted to be damaging by multiple in silico tools or highly conserved with a major amino acid change. (SP) 0600 - Variant is located in the annotated spectrin repeats domain (PMID: 32889669). (I) 0705 - No comparable missense variants have previous evidence for pathogenicity. (I) 0807 - This variant has no previous evidence of pathogenicity. (I) 0905 - No published segregation evidence has been identified for this variant. (I) 1007 - No published functional evidence has been identified for this variant. (I) 1208 - Inheritance information for this variant is not currently available in this individual. (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign

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