ClinVar Miner

Submissions for variant NM_182961.4(SYNE1):c.24310A>G (p.Lys8104Glu)

dbSNP: rs1563054108
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000732900 SCV000860898 uncertain significance not provided 2018-04-24 criteria provided, single submitter clinical testing
Invitae RCV001868979 SCV002295934 uncertain significance Autosomal recessive ataxia, Beauce type; Emery-Dreifuss muscular dystrophy 4, autosomal dominant 2021-12-02 criteria provided, single submitter clinical testing This sequence change replaces lysine, which is basic and polar, with glutamic acid, which is acidic and polar, at codon 8033 of the SYNE1 protein (p.Lys8033Glu). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with SYNE1-related conditions. ClinVar contains an entry for this variant (Variation ID: 596923). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002535297 SCV003725322 uncertain significance Inborn genetic diseases 2021-08-17 criteria provided, single submitter clinical testing The c.24097A>G (p.K8033E) alteration is located in exon 133 (coding exon 132) of the SYNE1 gene. This alteration results from a A to G substitution at nucleotide position 24097, causing the lysine (K) at amino acid position 8033 to be replaced by a glutamic acid (E). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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