ClinVar Miner

Submissions for variant NM_182961.4(SYNE1):c.2728A>G (p.Ser910Gly)

gnomAD frequency: 0.00041  dbSNP: rs141214076
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000287860 SCV000345051 uncertain significance not provided 2017-06-07 criteria provided, single submitter clinical testing
Invitae RCV001067771 SCV001232850 uncertain significance Autosomal recessive ataxia, Beauce type; Emery-Dreifuss muscular dystrophy 4, autosomal dominant 2022-09-27 criteria provided, single submitter clinical testing This sequence change replaces serine, which is neutral and polar, with glycine, which is neutral and non-polar, at codon 917 of the SYNE1 protein (p.Ser917Gly). This variant is present in population databases (rs141214076, gnomAD 0.2%). This variant has not been reported in the literature in individuals affected with SYNE1-related conditions. ClinVar contains an entry for this variant (Variation ID: 290487). Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV000287860 SCV001793079 uncertain significance not provided 2023-10-26 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Athena Diagnostics Inc RCV001660557 SCV001880870 likely benign not specified 2020-09-17 criteria provided, single submitter clinical testing

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