ClinVar Miner

Submissions for variant NM_198576.4(AGRN):c.5738C>T (p.Thr1913Met)

gnomAD frequency: 0.00012  dbSNP: rs201604787
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000559811 SCV000653978 uncertain significance Congenital myasthenic syndrome 8 2022-07-25 criteria provided, single submitter clinical testing This sequence change replaces threonine, which is neutral and polar, with methionine, which is neutral and non-polar, at codon 1913 of the AGRN protein (p.Thr1913Met). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). ClinVar contains an entry for this variant (Variation ID: 474158). This variant has not been reported in the literature in individuals affected with AGRN-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database.
Ambry Genetics RCV002530233 SCV003688467 uncertain significance Inborn genetic diseases 2021-07-14 criteria provided, single submitter clinical testing The c.5738C>T (p.T1913M) alteration is located in exon 34 (coding exon 34) of the AGRN gene. This alteration results from a C to T substitution at nucleotide position 5738, causing the threonine (T) at amino acid position 1913 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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