ClinVar Miner

Submissions for variant NM_206933.4(USH2A):c.12265G>A (p.Glu4089Lys)

dbSNP: rs1658179050
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001320979 SCV001511791 uncertain significance not provided 2021-08-30 criteria provided, single submitter clinical testing This sequence change replaces glutamic acid with lysine at codon 4089 of the USH2A protein (p.Glu4089Lys). The glutamic acid residue is highly conserved and there is a small physicochemical difference between glutamic acid and lysine. This variant is not present in population databases (ExAC no frequency). This missense change has been observed in individual(s) with the clinical features of Usher syndrome (Invitae). ClinVar contains an entry for this variant (Variation ID: 1021246). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C55"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Natera, Inc. RCV001835608 SCV002088315 uncertain significance Usher syndrome type 2A 2021-07-29 no assertion criteria provided clinical testing

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