Total submissions: 5
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Invitae | RCV001371075 | SCV001567628 | uncertain significance | not provided | 2022-08-04 | criteria provided, single submitter | clinical testing | This sequence change replaces arginine, which is basic and polar, with glutamine, which is neutral and polar, at codon 1777 of the USH2A protein (p.Arg1777Gln). This variant is present in population databases (rs541275063, gnomAD 0.05%). This missense change has been observed in individual(s) with clinical features of retinitis pigmentosa (PMID: 33576794). ClinVar contains an entry for this variant (Variation ID: 1061486). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The glutamine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. This variant disrupts the p.Arg1777 amino acid residue in USH2A. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 21593743, 22135276, 26629787, 26969326). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. |
Genome- |
RCV001578959 | SCV001806326 | uncertain significance | Usher syndrome type 2A | 2021-07-22 | criteria provided, single submitter | clinical testing | |
Genome- |
RCV001578960 | SCV001806327 | uncertain significance | Retinitis pigmentosa 39 | 2021-07-22 | criteria provided, single submitter | clinical testing | |
Gene |
RCV001371075 | SCV001825763 | uncertain significance | not provided | 2021-12-14 | criteria provided, single submitter | clinical testing | In silico analysis supports that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 33576794) |
Natera, |
RCV001578959 | SCV002091569 | uncertain significance | Usher syndrome type 2A | 2020-03-20 | no assertion criteria provided | clinical testing |