ClinVar Miner

List of variants reported as likely pathogenic for Gastrointestinal stromal tumor

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Total variants: 89
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HGVS dbSNP gnomAD frequency
NM_003000.3(SDHB):c.650G>A (p.Arg217His) rs747518441 0.00003
NM_003001.5(SDHC):c.377A>G (p.Tyr126Cys) rs898854295 0.00003
NM_004168.4(SDHA):c.1741G>A (p.Gly581Arg) rs771111180 0.00003
NM_004168.4(SDHA):c.1765C>T (p.Arg589Trp) rs387906780 0.00002
NM_000222.3(KIT):c.1540+2T>C rs760183633 0.00001
NM_003000.3(SDHB):c.221A>C (p.Asp74Ala) rs876658713 0.00001
NM_003000.3(SDHB):c.286G>A (p.Gly96Ser) rs587782243 0.00001
NM_003000.3(SDHB):c.649C>T (p.Arg217Cys) rs200245469 0.00001
NM_003001.5(SDHC):c.148C>T (p.Arg50Cys) rs587778661 0.00001
NM_003001.5(SDHC):c.215G>A (p.Arg72His) rs778582853 0.00001
NM_003001.5(SDHC):c.380A>G (p.His127Arg) rs786203457 0.00001
NC_000004.11:g.(?_55569880)_(55575715_?)dup
NC_000004.11:g.(?_55569966)_(55570700_?)del
NC_000004.11:g.(?_55575570)_(55598184_?)dup
NM_000222.3(KIT):c.1232-1G>A rs55737343
NM_000222.3(KIT):c.1540+1G>A rs2109769912
NM_000222.3(KIT):c.1540+1G>T
NM_000222.3(KIT):c.1540+2del
NM_000222.3(KIT):c.1541-1G>A rs2109773622
NM_000222.3(KIT):c.1652_1672del (p.Pro551_Lys558delinsGln) rs1560417385
NM_000222.3(KIT):c.1653_1660delinsAA (p.Met552_Glu554delinsLys) rs1560417396
NM_000222.3(KIT):c.1665_1672delinsCC (p.Trp557_Lys558del) rs1560417427
NM_000222.3(KIT):c.1668_1686del (p.Gln556_Trp557insTer) rs1560417438
NM_000222.3(KIT):c.1669T>A (p.Trp557Arg) rs121913235
NM_000222.3(KIT):c.1669T>C (p.Trp557Arg) rs121913235
NM_000222.3(KIT):c.1669T>G (p.Trp557Gly) rs121913235
NM_000222.3(KIT):c.1669_1674del (p.Trp557_Lys558del) rs869025568
NM_000222.3(KIT):c.1670G>C (p.Trp557Ser) rs1057520032
NM_000222.3(KIT):c.1670_1671delinsTT (p.Trp557Phe) rs1057520035
NM_000222.3(KIT):c.1671G>C (p.Trp557Cys) rs1057520033
NM_000222.3(KIT):c.1672A>C (p.Lys558Gln) rs1057520031
NM_000222.3(KIT):c.1672A>G (p.Lys558Glu) rs1057520031
NM_000222.3(KIT):c.1674G>T (p.Lys558Asn) rs200375589
NM_000222.3(KIT):c.1675G>A (p.Val559Ile) rs121913520
NM_000222.3(KIT):c.1676T>A (p.Val559Asp) rs121913517
NM_000222.3(KIT):c.1676T>C (p.Val559Ala) rs121913517
NM_000222.3(KIT):c.1676T>G (p.Val559Gly) rs121913517
NM_000222.3(KIT):c.1676_1720del (p.Val559_Thr574delinsAla) rs1560417535
NM_000222.3(KIT):c.1679T>A (p.Val560Asp) rs121913521
NM_000222.3(KIT):c.1679T>G (p.Val560Gly) rs121913521
NM_000222.3(KIT):c.1679_1680inv (p.Val560Glu)
NM_000222.3(KIT):c.1715_1756dup (p.Pro585_Arg586insAsnProThrGlnLeuProTyrAspHisLysTrpGluPhePro) rs1560417642
NM_000222.3(KIT):c.1721_1765dup (p.Arg588_Leu589insProGlnLeuProTyrAspHisLysTrpGluPheProArgAsnArg) rs1560417666
NM_000222.3(KIT):c.1722_1766dup (p.Gln575_Leu589dup) rs1560417673
NM_000222.3(KIT):c.1727T>C (p.Leu576Pro) rs121913513
NM_000222.3(KIT):c.1747G>A (p.Glu583Lys) rs121913680
NM_000222.3(KIT):c.1774+1G>T
NM_000222.3(KIT):c.1775-2A>G rs1577995761
NM_000222.3(KIT):c.1823C>A (p.Ala608Asp)
NM_000222.3(KIT):c.1879+1G>A rs794726675
NM_000222.3(KIT):c.1924A>G (p.Lys642Glu) rs121913512
NM_000222.3(KIT):c.1961T>C (p.Val654Ala) rs121913523
NM_000222.3(KIT):c.1965T>G (p.Asn655Lys) rs1057519708
NM_000222.3(KIT):c.2009C>T (p.Thr670Ile) rs121913516
NM_000222.3(KIT):c.2142-1G>A
NM_000222.3(KIT):c.2362-1G>A rs1578003055
NM_000222.3(KIT):c.2446G>C (p.Asp816His) rs121913506
NM_000222.3(KIT):c.2446G>T (p.Asp816Tyr) rs121913506
NM_000222.3(KIT):c.2447A>T (p.Asp816Val) rs121913507
NM_000222.3(KIT):c.2465A>T (p.Asn822Ile) rs993022333
NM_000222.3(KIT):c.2466T>A (p.Asn822Lys) rs121913514
NM_000222.3(KIT):c.2466T>G (p.Asn822Lys) rs121913514
NM_000222.3(KIT):c.2467T>G (p.Tyr823Asp) rs1057519761
NM_000222.3(KIT):c.2485G>C (p.Ala829Pro) rs1057519713
NM_000222.3(KIT):c.2494C>T (p.Pro832Ser)
NM_000222.3(KIT):c.2515G>A (p.Glu839Lys) rs121913509
NM_000222.3(KIT):c.2648T>C (p.Ile883Thr)
NM_000222.3(KIT):c.757-1G>A rs2109692864
NM_000222.3(KIT):c.757-2A>T
NM_000222.3(KIT):c.840_925+649del rs1720606396
NM_003000.3(SDHB):c.289A>T (p.Ile97Phe) rs1553177769
NM_003000.3(SDHB):c.292T>C (p.Cys98Arg)
NM_003000.3(SDHB):c.575G>C (p.Cys192Ser) rs397516835
NM_003000.3(SDHB):c.640C>T (p.Gln214Ter) rs876658461
NM_003000.3(SDHB):c.689G>T (p.Arg230Leu) rs587782604
NM_003001.5(SDHC):c.179+1G>T rs1057517818
NM_003001.5(SDHC):c.387G>A (p.Trp129Ter) rs981049067
NM_004168.4(SDHA):c.1766G>A (p.Arg589Gln) rs763766162
NM_004168.4(SDHA):c.992_999dup (p.Ala334fs)
NM_004985.5(KRAS):c.35G>C (p.Gly12Ala) rs121913529
NM_006206.6(PDGFRA):c.1664A>G (p.Tyr555Cys) rs121908589
NM_006206.6(PDGFRA):c.2522_2527del (p.Arg841_Asp842del) rs121913269
NM_006206.6(PDGFRA):c.2524G>T (p.Asp842Tyr) rs121913265
NM_006206.6(PDGFRA):c.2524_2525delinsAT (p.Asp842Ile) rs121913264
NM_006206.6(PDGFRA):c.2524_2532del (p.Asp842_Met844del) rs121913262
NM_006206.6(PDGFRA):c.2526_2537del (p.Ile843_Asp846del) rs1553906053
NM_006206.6(PDGFRA):c.2527_2538del (p.Ile843_Asp846del) rs121913267
NM_006206.6(PDGFRA):c.2536G>T (p.Asp846Tyr) rs121908588
NM_006206.6(PDGFRA):c.451C>T (p.Arg151Cys) rs1449637193

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