List of variants reported as benign for Gastrointestinal stromal tumor by Illumina Laboratory Services, Illumina

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Total variants: 41

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HGVS	dbSNP	gnomAD frequency
NM_006206.6(PDGFRA):c.3222T>C (p.Asp1074=)	rs7685117	0.99715
NM_006206.6(PDGFRA):c.*1511C>A	rs1565664	0.99713
NM_006206.6(PDGFRA):c.*78A>G	rs7680422	0.99696
NM_006206.6(PDGFRA):c.*2387T>G	rs10034498	0.98684
NM_006206.6(PDGFRA):c.1701A>G (p.Pro567=)	rs1873778	0.96449
NM_006206.6(PDGFRA):c.2472C>T (p.Val824=)	rs2228230	0.20293
NM_006206.6(PDGFRA):c.612T>C (p.Asn204=)	rs2229307	0.17867
NM_006206.6(PDGFRA):c.939T>G (p.Gly313=)	rs4358459	0.17704
NM_006206.6(PDGFRA):c.1809G>A (p.Ala603=)	rs10028020	0.17498
NM_000222.3(KIT):c.*1704G>T	rs8022	0.16223
NM_006206.6(PDGFRA):c.1432T>C (p.Ser478Pro)	rs35597368	0.15258
NM_000222.3(KIT):c.*149C>T	rs2213181	0.11143
NM_006206.6(PDGFRA):c.*832T>C	rs12511976	0.06370
NM_006206.6(PDGFRA):c.932-4A>G	rs78405886	0.03447
NM_000222.3(KIT):c.1638A>G (p.Lys546=)	rs55986963	0.02258
NM_000222.3(KIT):c.2394C>T (p.Ile798=)	rs55789615	0.02125
NM_000222.3(KIT):c.2847C>T (p.Pro949=)	rs56288823	0.01843
NM_006206.6(PDGFRA):c.1019G>A (p.Arg340Gln)	rs77524207	0.01633
NM_006206.6(PDGFRA):c.*1429C>T	rs56288633	0.01364
NM_000222.3(KIT):c.1119C>T (p.Tyr373=)	rs72549293	0.00964
NM_000222.3(KIT):c.1794A>T (p.Gly598=)	rs72549292	0.00952
NM_000222.3(KIT):c.*66T>G	rs112972811	0.00939
NM_000222.3(KIT):c.*1241G>A	rs114377961	0.00931
NM_006206.6(PDGFRA):c.236G>A (p.Gly79Asp)	rs36035373	0.00897
NM_000222.3(KIT):c.*1524A>G	rs17084736	0.00815
NM_006206.6(PDGFRA):c.1320G>A (p.Thr440=)	rs56026726	0.00722
NM_006206.6(PDGFRA):c.672G>A (p.Val224=)	rs151259376	0.00707
NM_006206.6(PDGFRA):c.*2559G>A	rs138584193	0.00503
NM_000222.3(KIT):c.*352A>G	rs149336515	0.00319
NM_000222.3(KIT):c.1120G>A (p.Val374Ile)	rs73137716	0.00218
NM_000222.3(KIT):c.2622G>A (p.Pro874=)	rs55817813	0.00188
NM_000222.3(KIT):c.123A>T (p.Pro41=)	rs72549300	0.00182
NM_006206.6(PDGFRA):c.*51G>A	rs141346675	0.00148
NM_006206.6(PDGFRA):c.1731G>A (p.Pro577=)	rs55830582	0.00105
NM_006206.6(PDGFRA):c.*691G>A	rs117287047	0.00020
NM_006206.6(PDGFRA):c.*479C>A	rs117886200	0.00008
NM_006206.6(PDGFRA):c.*1939T>C	rs368579295	0.00004
NM_006206.6(PDGFRA):c.1110_1111del	rs34529347
NM_006206.6(PDGFRA):c.*1137G>A	rs55710909
NM_006206.6(PDGFRA):c.*374A>C	rs3690
NM_006206.6(PDGFRA):c.-106AG[1]	rs1799767

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