ClinVar Miner

List of variants reported as benign for Hereditary spastic paraplegia 15

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Total variants: 49
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HGVS dbSNP gnomAD frequency
NM_015346.4(ZFYVE26):c.*1409C>T rs10288 0.94789
NM_015346.4(ZFYVE26):c.*1582G>A rs8017209 0.94782
NM_015346.4(ZFYVE26):c.5672A>G (p.Asn1891Ser) rs3742883 0.93729
NM_015346.4(ZFYVE26):c.2112T>C (p.Pro704=) rs12891164 0.68800
NM_015346.4(ZFYVE26):c.887-38T>C rs181576 0.68717
NM_015346.4(ZFYVE26):c.4373-35G>A rs2235962 0.59379
NM_015346.4(ZFYVE26):c.*1361T>C rs1044126 0.43636
NM_015346.4(ZFYVE26):c.*365A>G rs12879105 0.41164
NM_015346.4(ZFYVE26):c.*1740C>A rs9449 0.17216
NM_015346.4(ZFYVE26):c.2559G>A (p.Leu853=) rs7143196 0.14152
NM_015346.4(ZFYVE26):c.2692A>T (p.Thr898Ser) rs17192170 0.09199
NM_015346.4(ZFYVE26):c.3365C>T (p.Ala1122Val) rs3742884 0.04741
NM_015346.4(ZFYVE26):c.3308C>T (p.Pro1103Leu) rs3742885 0.04730
NM_015346.4(ZFYVE26):c.3118T>A (p.Ser1040Thr) rs112787369 0.03993
NM_015346.4(ZFYVE26):c.3757C>T (p.Leu1253=) rs34296097 0.03528
NM_015346.4(ZFYVE26):c.1224G>T (p.Gly408=) rs17104689 0.03409
NM_015346.4(ZFYVE26):c.7232G>A (p.Arg2411His) rs34373049 0.03090
NM_015346.4(ZFYVE26):c.2332+7del rs145183291 0.02598
NM_015346.4(ZFYVE26):c.2852C>T (p.Thr951Met) rs35471427 0.02295
NM_015346.4(ZFYVE26):c.6921C>T (p.Ser2307=) rs35917338 0.01911
NM_015346.4(ZFYVE26):c.*1133A>G rs73276687 0.01855
NM_015346.4(ZFYVE26):c.7407T>C (p.Asp2469=) rs35106153 0.01846
NM_015346.4(ZFYVE26):c.5784T>C (p.Tyr1928=) rs34852231 0.01623
NM_015346.4(ZFYVE26):c.6987-3C>T rs76728509 0.01610
NM_015346.4(ZFYVE26):c.*1768C>T rs57048278 0.01228
NM_015346.4(ZFYVE26):c.5612G>A (p.Cys1871Tyr) rs61746722 0.00962
NM_015346.4(ZFYVE26):c.1844C>T (p.Ser615Phe) rs117228915 0.00888
NM_015346.4(ZFYVE26):c.2826G>A (p.Met942Ile) rs117367857 0.00826
NM_015346.4(ZFYVE26):c.6229G>A (p.Gly2077Arg) rs140540720 0.00750
NM_015346.4(ZFYVE26):c.7586C>G (p.Pro2529Arg) rs143198225 0.00510
NM_015346.4(ZFYVE26):c.6588+7C>T rs186040735 0.00471
NM_015346.4(ZFYVE26):c.5653+16G>A rs140437859 0.00367
NM_015346.4(ZFYVE26):c.7055C>T (p.Thr2352Ile) rs151166497 0.00319
NM_015346.4(ZFYVE26):c.7371+18C>T rs149769693 0.00272
NM_015346.4(ZFYVE26):c.3722G>A (p.Arg1241Gln) rs140756827 0.00258
NM_015346.4(ZFYVE26):c.6405G>A (p.Leu2135=) rs76327447 0.00220
NM_015346.4(ZFYVE26):c.453C>T (p.Ser151=) rs75391113 0.00203
NM_015346.4(ZFYVE26):c.1933A>G (p.Met645Val) rs77129887 0.00201
NM_015346.4(ZFYVE26):c.4066T>G (p.Cys1356Gly) rs149276487 0.00166
NM_015346.4(ZFYVE26):c.5799C>T (p.Ser1933=) rs145858625 0.00115
NM_015346.4(ZFYVE26):c.273+13A>G rs150070634 0.00070
NM_015346.4(ZFYVE26):c.2481C>A (p.Pro827=) rs139283212 0.00033
NM_015346.4(ZFYVE26):c.748G>A (p.Glu250Lys) rs200340910 0.00019
NM_015346.4(ZFYVE26):c.1597G>A (p.Ala533Thr) rs551062468 0.00004
NM_015346.4(ZFYVE26):c.2105G>A (p.Arg702His) rs201339450 0.00003
NM_015346.4(ZFYVE26):c.3210C>G (p.Pro1070=) rs7156492
NM_015346.4(ZFYVE26):c.3210C>T (p.Pro1070=) rs7156492
NM_015346.4(ZFYVE26):c.4370G>A (p.Cys1457Tyr) rs2235967
NM_015346.4(ZFYVE26):c.7129-19_7129-17dup rs111465559

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