ClinVar Miner

List of variants reported as pathogenic for Holocarboxylase synthetase deficiency

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Minimum conflict level:
ClinVar version:
Total variants: 98
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HGVS dbSNP gnomAD frequency
NM_001352514.2(HLCS):c.1974dup (p.Val659fs) rs767533946 0.00009
NM_001352514.2(HLCS):c.2260dup (p.Ser754fs) rs766163167 0.00004
NM_001352514.2(HLCS):c.2341G>A (p.Asp781Asn) rs149399432 0.00004
NM_001352514.2(HLCS):c.2434C>T (p.Arg812Ter) rs146448211 0.00004
NM_001352514.2(HLCS):c.1960+5G>A rs753887925 0.00003
NM_001352514.2(HLCS):c.2121+1G>A rs1175936807 0.00003
NM_001352514.2(HLCS):c.2134C>T (p.Arg712Ter) rs772791252 0.00003
NM_001352514.2(HLCS):c.2182G>A (p.Gly728Ser) rs119103230 0.00003
NM_001352514.2(HLCS):c.1045G>T (p.Glu349Ter) rs148324626 0.00002
NM_001352514.2(HLCS):c.1529T>A (p.Val510Asp) rs769499327 0.00002
NM_001352514.2(HLCS):c.1985G>A (p.Ser662Asn) rs773398782 0.00002
NM_001352514.2(HLCS):c.2152G>A (p.Asp718Asn) rs119103228 0.00002
NM_001352514.2(HLCS):c.1088T>G (p.Leu363Arg) rs28934602 0.00001
NM_001352514.2(HLCS):c.1096dup (p.Ile366fs) rs773102942 0.00001
NM_001352514.2(HLCS):c.1151T>C (p.Leu384Pro) rs119103227 0.00001
NM_001352514.2(HLCS):c.1543del (p.Ile514_Leu515insTer) rs1288789420 0.00001
NM_001352514.2(HLCS):c.1646G>A (p.Trp549Ter) rs1342457304 0.00001
NM_001352514.2(HLCS):c.1658_1659del (p.His553fs) rs751956557 0.00001
NM_001352514.2(HLCS):c.1963C>T (p.Arg655Trp) rs119103229 0.00001
NM_001352514.2(HLCS):c.2089G>A (p.Val697Met) rs119103231 0.00001
NM_001352514.2(HLCS):c.2361_2362insT (p.Val788fs) rs760372711 0.00001
NM_001352514.2(HLCS):c.2451-1G>A rs1158898827 0.00001
NC_000021.8:g.(?_37707582)_(38139606_?)del
NC_000021.8:g.(?_38128823)_(38139606_?)del
NC_000021.8:g.(?_38132018)_(38362704_?)del
NC_000021.8:g.(?_38269140)_(38269451_?)del
NC_000021.8:g.(?_38269140)_(38311203_?)del
NC_000021.8:g.(?_38269150)_(38269441_?)del
NC_000021.8:g.(?_38302531)_(38302753_?)del
NC_000021.8:g.(?_38302541)_(38311304_?)del
NC_000021.9:g.(?_36765002)_(36767295_?)del
NC_000021.9:g.(?_36938822)_(36939004_?)del
NM_001352514.2(HLCS):c.1025dup (p.Tyr342Ter) rs1601803431
NM_001352514.2(HLCS):c.1063_1064del (p.Asp355fs) rs2517578591
NM_001352514.2(HLCS):c.1083T>A (p.Cys361Ter) rs568871363
NM_001352514.2(HLCS):c.1091T>A (p.Leu364Ter) rs2517578279
NM_001352514.2(HLCS):c.1133del (p.Gln378fs) rs2066903607
NM_001352514.2(HLCS):c.1156C>T (p.Gln386Ter) rs2146525207
NM_001352514.2(HLCS):c.1210del (p.Gln403_Val404insTer) rs2517577085
NM_001352514.2(HLCS):c.1223del (p.Gly408fs) rs771944310
NM_001352514.2(HLCS):c.1418dup (p.Glu474fs) rs1555955827
NM_001352514.2(HLCS):c.1440_1443dup (p.Leu482fs)
NM_001352514.2(HLCS):c.1444_1456delinsATAGTGCAAACTCCAACATAGTGCAAACT (p.Leu482_Pro486delinsIleValGlnThrProThrTer) rs2517547973
NM_001352514.2(HLCS):c.1445dup (p.Leu482fs) rs2517548062
NM_001352514.2(HLCS):c.1471del (p.Val491fs) rs2517547824
NM_001352514.2(HLCS):c.1494dup (p.Leu500fs) rs2517547588
NM_001352514.2(HLCS):c.1496T>A (p.Leu499Ter) rs1601779091
NM_001352514.2(HLCS):c.1505C>G (p.Ser502Ter) rs2517547488
NM_001352514.2(HLCS):c.1537_1540del (p.Glu513fs) rs2517547106
NM_001352514.2(HLCS):c.1552del (p.Gly519fs) rs1569206815
NM_001352514.2(HLCS):c.1570dup (p.Met524fs)
NM_001352514.2(HLCS):c.1576C>T (p.Gln526Ter) rs1393866282
NM_001352514.2(HLCS):c.1599_1600del (p.Tyr534fs) rs2066578388
NM_001352514.2(HLCS):c.1600_1604del (p.Tyr534fs) rs2517546301
NM_001352514.2(HLCS):c.1627_1628del (p.Arg543fs) rs2146336516
NM_001352514.2(HLCS):c.1631del (p.Asp544fs) rs2517424327
NM_001352514.2(HLCS):c.1631dup (p.Asp544fs) rs2517424319
NM_001352514.2(HLCS):c.1634del (p.Pro545fs) rs2146336447
NM_001352514.2(HLCS):c.1698_1701del (p.Leu567fs) rs2065041493
NM_001352514.2(HLCS):c.1699_1700del (p.Ser566_Leu567insTer) rs1555930523
NM_001352514.2(HLCS):c.1769dup (p.Met590fs) rs1370055698
NM_001352514.2(HLCS):c.1799T>G (p.Leu600Ter) rs2517422915
NM_001352514.2(HLCS):c.1831C>T (p.Gln611Ter) rs1243965664
NM_001352514.2(HLCS):c.1869del (p.Thr624fs) rs2065031709
NM_001352514.2(HLCS):c.1910del (p.Pro637fs) rs2516880393
NM_001352514.2(HLCS):c.1980G>A (p.Trp660Ter) rs2516872951
NM_001352514.2(HLCS):c.2030del (p.Leu677fs) rs2516872606
NM_001352514.2(HLCS):c.2038C>T (p.Gln680Ter) rs2516872544
NM_001352514.2(HLCS):c.2041dup (p.Leu681fs) rs2516872518
NM_001352514.2(HLCS):c.2060_2081del (p.Phe687fs) rs2089984034
NM_001352514.2(HLCS):c.2128_2135delinsTAAAGGGTGA (p.Asn710_Arg712delinsTer) rs2516853656
NM_001352514.2(HLCS):c.2144G>A (p.Trp715Ter) rs1174060268
NM_001352514.2(HLCS):c.2176A>T (p.Lys726Ter) rs2516853374
NM_001352514.2(HLCS):c.2212_2213del (p.Gly738fs) rs2516853102
NM_001352514.2(HLCS):c.2224del (p.Tyr742fs) rs2516853033
NM_001352514.2(HLCS):c.2279T>C (p.Ile760Thr) rs2145731903
NM_001352514.2(HLCS):c.2301C>G (p.Tyr767Ter) rs2516841458
NM_001352514.2(HLCS):c.2308C>T (p.Gln770Ter) rs2089614259
NM_001352514.2(HLCS):c.2333T>G (p.Leu778Ter) rs2516841193
NM_001352514.2(HLCS):c.2369_2373del (p.Val790fs) rs2516840809
NM_001352514.2(HLCS):c.2379del (p.Lys793fs)
NM_001352514.2(HLCS):c.2398del (p.Asp800fs)
NM_001352514.2(HLCS):c.2439C>G (p.Tyr813Ter) rs2516840344
NM_001352514.2(HLCS):c.2458del (p.Gln820fs) rs2516829857
NM_001352514.2(HLCS):c.505C>T (p.Gln169Ter) rs2517583520
NM_001352514.2(HLCS):c.513dup (p.Thr172fs) rs2517583431
NM_001352514.2(HLCS):c.529A>T (p.Lys177Ter)
NM_001352514.2(HLCS):c.535C>T (p.Gln179Ter) rs2066942649
NM_001352514.2(HLCS):c.655G>T (p.Glu219Ter) rs1411221306
NM_001352514.2(HLCS):c.664C>T (p.Gln222Ter) rs1555957134
NM_001352514.2(HLCS):c.664_667del (p.Gln222fs) rs776431253
NM_001352514.2(HLCS):c.691G>T (p.Glu231Ter) rs1569218416
NM_001352514.2(HLCS):c.726dup (p.Val243fs) rs1388238708
NM_001352514.2(HLCS):c.727del (p.Val243fs) rs2146528200
NM_001352514.2(HLCS):c.763G>T (p.Glu255Ter) rs937407062
NM_001352514.2(HLCS):c.863del (p.Ser288fs) rs1015594025
NM_001352514.2(HLCS):c.958C>T (p.Gln320Ter) rs1288729804
NM_001352514.2(HLCS):c.958del (p.Gln320fs) rs2517579694

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