ClinVar Miner

List of variants in gene LOC102724058, SCN1A studied for Migraine, familial hemiplegic, 3

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Total variants: 85
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HGVS dbSNP gnomAD frequency
NM_001165963.4(SCN1A):c.*721A>G rs4667859 0.99675
NM_001165963.4(SCN1A):c.3199G>A (p.Ala1067Thr) rs2298771 0.73872
NM_001165963.4(SCN1A):c.*1739C>T rs1813502 0.70050
NM_001165963.4(SCN1A):c.*1025T>C rs10497275 0.13322
NM_001165963.4(SCN1A):c.*1961C>T rs7577411 0.08473
NM_001165963.4(SCN1A):c.*1693A>G rs7591522 0.03977
NM_001165963.4(SCN1A):c.3723T>C (p.Tyr1241=) rs36031496 0.03789
NM_001165963.4(SCN1A):c.*1224G>A rs77088538 0.01643
NM_001165963.4(SCN1A):c.*1653C>T rs79971813 0.01291
NM_001165963.4(SCN1A):c.*1031A>T rs114522414 0.00876
NM_001165963.4(SCN1A):c.5864T>C (p.Ile1955Thr) rs35735053 0.00876
NM_001165963.4(SCN1A):c.5418G>A (p.Glu1806=) rs140237315 0.00855
NM_001165963.4(SCN1A):c.*1952T>C rs184794128 0.00627
NM_001165963.4(SCN1A):c.*1864T>A rs150155252 0.00341
NM_001165963.4(SCN1A):c.*588A>G rs539073575 0.00258
NM_001165963.4(SCN1A):c.*677G>A rs142037381 0.00181
NM_001165963.4(SCN1A):c.3705+12T>G rs147032678 0.00181
NM_001165963.4(SCN1A):c.3521C>G (p.Thr1174Ser) rs121918799 0.00159
NM_001165963.4(SCN1A):c.3804T>C (p.Leu1268=) rs143980709 0.00159
NM_001165963.4(SCN1A):c.4731T>C (p.Asn1577=) rs145296488 0.00114
NM_001165963.4(SCN1A):c.5782C>G (p.Arg1928Gly) rs121917956 0.00073
NM_001165963.4(SCN1A):c.3924A>T (p.Glu1308Asp) rs121917910 0.00070
NM_001165963.4(SCN1A):c.*774G>A rs570379164 0.00054
NM_001165963.4(SCN1A):c.*1152A>G rs911171545 0.00049
NM_001165963.4(SCN1A):c.4872G>A (p.Leu1624=) rs142910512 0.00048
NM_001165963.4(SCN1A):c.4945C>T (p.Leu1649=) rs148546224 0.00047
NM_001165963.4(SCN1A):c.*1795G>A rs189183531 0.00021
NM_001165963.4(SCN1A):c.*129T>G rs886055040 0.00015
NM_001165963.4(SCN1A):c.*797T>C rs550647308 0.00013
NM_001165963.4(SCN1A):c.*1366A>T rs959627960 0.00011
NM_001165963.4(SCN1A):c.*1989C>T rs371391758 0.00011
NM_001165963.4(SCN1A):c.*460A>C rs746164130 0.00011
NM_001165963.4(SCN1A):c.*553G>A rs771107716 0.00011
NM_001165963.4(SCN1A):c.3498G>A (p.Gln1166=) rs145410000 0.00011
NM_001165963.4(SCN1A):c.5639G>A (p.Gly1880Glu) rs201905405 0.00011
NM_001165963.4(SCN1A):c.4557G>A (p.Pro1519=) rs368785509 0.00008
NM_001165963.4(SCN1A):c.3732G>A (p.Gln1244=) rs369688121 0.00006
NM_001165963.4(SCN1A):c.*186G>A rs948256829 0.00005
NM_001165963.4(SCN1A):c.*458G>A rs772641408 0.00005
NM_001165963.4(SCN1A):c.*1794C>T rs922803278 0.00003
NM_001165963.4(SCN1A):c.*1950G>A rs773354801 0.00003
NM_001165963.4(SCN1A):c.4162G>A (p.Glu1388Lys) rs775820803 0.00003
NM_001165963.4(SCN1A):c.4095C>T (p.Gly1365=) rs372749240 0.00002
NM_001165963.4(SCN1A):c.*1121T>C rs886055034 0.00001
NM_001165963.4(SCN1A):c.*1297G>A rs1030491723 0.00001
NM_001165963.4(SCN1A):c.*1482G>A rs886055033 0.00001
NM_001165963.4(SCN1A):c.*259T>C rs886055039 0.00001
NM_001165963.4(SCN1A):c.*374T>C rs1466790566 0.00001
NM_001165963.4(SCN1A):c.*515G>T rs1268496047 0.00001
NM_001165963.4(SCN1A):c.*912T>A rs886055036 0.00001
NM_001165963.4(SCN1A):c.*926C>T rs751306912 0.00001
NM_001165963.4(SCN1A):c.3573T>C (p.Cys1191=) rs750943685 0.00001
NM_001165963.4(SCN1A):c.4002G>A (p.Arg1334=) rs751215933 0.00001
NM_001165963.4(SCN1A):c.4495T>C (p.Phe1499Leu) rs121918632 0.00001
NM_001165963.4(SCN1A):c.4581+12C>T rs886055042 0.00001
NM_001165963.4(SCN1A):c.4941A>G (p.Leu1647=) rs770111331 0.00001
NM_001165963.4(SCN1A):c.5656C>A (p.Arg1886=) rs779614747 0.00001
NM_001165963.4(SCN1A):c.*1125T>G rs1688938789
NM_001165963.4(SCN1A):c.*1144G>C rs1688934031
NM_001165963.4(SCN1A):c.*1325G>A rs1688909719
NM_001165963.4(SCN1A):c.*977T>C rs886055035
NM_001165963.4(SCN1A):c.3513T>C (p.Pro1171=) rs886055044
NM_001165963.4(SCN1A):c.3551-12C>T rs1692905818
NM_001165963.4(SCN1A):c.3637C>T (p.Arg1213Ter) rs794726710
NM_001165963.4(SCN1A):c.3880-10G>C rs886055043
NM_001165963.4(SCN1A):c.4019T>C (p.Leu1340Pro) rs1691091949
NM_001165963.4(SCN1A):c.4220G>A (p.Arg1407Gln) rs1691045272
NM_001165963.4(SCN1A):c.4300T>A (p.Trp1434Arg) rs121918789
NM_001165963.4(SCN1A):c.4454A>G (p.Asn1485Ser)
NM_001165963.4(SCN1A):c.4465C>A (p.Gln1489Lys) rs121918628
NM_001165963.4(SCN1A):c.4467G>C (p.Gln1489His) rs121918633
NM_001165963.4(SCN1A):c.4551A>G (p.Lys1517=) rs374087499
NM_001165963.4(SCN1A):c.4554dup (p.Pro1519fs) rs794726825
NM_001165963.4(SCN1A):c.4573C>T (p.Arg1525Ter) rs794726752
NM_001165963.4(SCN1A):c.4772A>T (p.Lys1591Ile) rs1689685377
NM_001165963.4(SCN1A):c.4907G>A (p.Arg1636Gln) rs121917995
NM_001165963.4(SCN1A):c.4924A>G (p.Arg1642Gly)
NM_001165963.4(SCN1A):c.4933C>T (p.Arg1645Ter) rs794726759
NM_001165963.4(SCN1A):c.4934G>A (p.Arg1645Gln) rs121917976
NM_001165963.4(SCN1A):c.4988T>C (p.Leu1663Ser) rs1553520425
NM_001165963.4(SCN1A):c.5341T>C (p.Tyr1781His) rs1689242255
NM_001165963.4(SCN1A):c.5674C>T (p.Arg1892Ter) rs794726739
NM_001165963.4(SCN1A):c.5734C>T (p.Arg1912Ter) rs77216276
NM_001165963.4(SCN1A):c.5901C>A (p.Asn1967Lys) rs1689106949
NM_001165963.4(SCN1A):c.5992G>C (p.Glu1998Gln) rs886055041

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