ClinVar Miner

List of variants in gene SCN2A studied for Seizures, benign familial infantile, 3

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Gene type:
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Total variants: 211
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HGVS dbSNP gnomAD frequency
NM_001040142.2(SCN2A):c.1035-3T>C rs2121371 0.82016
NM_001040142.2(SCN2A):c.268-28A>G rs7593568 0.81675
NM_001040142.2(SCN2A):c.1671+49A>G rs1838846 0.81599
NM_001040142.2(SCN2A):c.1672-16C>T rs1867864 0.56164
NM_001040142.2(SCN2A):c.*1713G>A rs1007722 0.37578
NM_001040142.2(SCN2A):c.4914T>A (p.Arg1638=) rs2060198 0.25169
NM_001040142.2(SCN2A):c.4255-31A>G rs1864885 0.20300
NM_001040142.2(SCN2A):c.56G>A (p.Arg19Lys) rs17183814 0.06063
NM_001040142.2(SCN2A):c.*1758C>T rs75263553 0.03304
NM_001040142.2(SCN2A):c.*2364T>G rs73969402 0.01800
NM_001040142.2(SCN2A):c.*2422G>T rs73972503 0.01799
NM_001040142.2(SCN2A):c.*2440C>G rs73972504 0.01799
NM_001040142.2(SCN2A):c.1785T>C (p.Asp595=) rs141815642 0.00973
NM_001040142.2(SCN2A):c.*2423A>G rs77976453 0.00934
NM_001040142.2(SCN2A):c.5919C>T (p.Pro1973=) rs73025979 0.00850
NM_001040142.2(SCN2A):c.1842G>T (p.Pro614=) rs114315466 0.00790
NM_001040142.2(SCN2A):c.1269G>A (p.Val423=) rs139815570 0.00662
NM_001040142.2(SCN2A):c.5326C>T (p.Leu1776=) rs138123155 0.00559
NM_001040142.2(SCN2A):c.*417C>T rs141754622 0.00527
NM_001040142.2(SCN2A):c.2034A>G (p.Thr678=) rs147891446 0.00504
NM_001040142.2(SCN2A):c.2723A>G (p.Lys908Arg) rs2228980 0.00366
NM_001040142.2(SCN2A):c.*1507T>G rs149580267 0.00281
NM_001040142.2(SCN2A):c.387-10G>A rs2304015 0.00277
NM_001040142.2(SCN2A):c.*1036T>C rs562663760 0.00256
NM_001040142.2(SCN2A):c.2955C>T (p.Ser985=) rs149859004 0.00252
NM_001040142.2(SCN2A):c.*557G>A rs182846824 0.00235
NM_001040142.2(SCN2A):c.*853C>T rs188104763 0.00220
NM_001040142.2(SCN2A):c.5910G>A (p.Thr1970=) rs75057869 0.00190
NM_001040142.2(SCN2A):c.*1056T>C rs184628337 0.00180
NM_001040142.2(SCN2A):c.3453C>T (p.Pro1151=) rs145662546 0.00166
NC_000002.12:g.165392314G>A rs189308010 0.00146
NM_001040142.2(SCN2A):c.5229A>G (p.Lys1743=) rs2227898 0.00144
NM_001040142.2(SCN2A):c.*2222G>A rs187365022 0.00135
NM_001040142.2(SCN2A):c.*437G>A rs553239308 0.00134
NM_001040142.2(SCN2A):c.*2480A>G rs184839439 0.00123
NM_001040142.2(SCN2A):c.*1474G>A rs138232803 0.00119
NM_001040142.2(SCN2A):c.*874A>G rs572817494 0.00103
NM_001040142.2(SCN2A):c.3594G>A (p.Arg1198=) rs140194137 0.00096
NM_001040142.2(SCN2A):c.*792A>G rs539290679 0.00074
NM_001040142.2(SCN2A):c.3372C>T (p.Ser1124=) rs571408286 0.00074
NM_001040142.2(SCN2A):c.-51-1734del rs886054994 0.00064
NM_001040142.2(SCN2A):c.100G>A (p.Ala34Thr) rs144814658 0.00058
NM_001040142.2(SCN2A):c.5155T>C (p.Leu1719=) rs199698414 0.00050
NM_001040142.2(SCN2A):c.*2374T>G rs544322279 0.00039
NM_001040142.2(SCN2A):c.1416A>G (p.Arg472=) rs200246820 0.00038
NM_001040142.2(SCN2A):c.*2039A>G rs554913735 0.00035
NM_001040142.2(SCN2A):c.82C>T (p.Arg28Cys) rs200884216 0.00025
NM_001040142.2(SCN2A):c.2923C>T (p.Leu975=) rs375858093 0.00024
NM_001040142.2(SCN2A):c.5397T>C (p.Tyr1799=) rs200603552 0.00020
NM_001040142.2(SCN2A):c.5517C>T (p.Leu1839=) rs148424455 0.00017
NM_001040142.2(SCN2A):c.879T>G (p.Thr293=) rs201685102 0.00017
NM_001040142.2(SCN2A):c.*2358A>C rs191911206 0.00016
NM_001040142.2(SCN2A):c.4287T>C (p.Tyr1429=) rs150209984 0.00016
NM_001040142.2(SCN2A):c.4565G>C (p.Gly1522Ala) rs147522594 0.00016
NM_001040142.2(SCN2A):c.3213A>C (p.Gly1071=) rs199997352 0.00014
NM_001040142.2(SCN2A):c.960T>C (p.Ile320=) rs185590667 0.00014
NM_001040142.2(SCN2A):c.*88G>A rs574867892 0.00013
NM_001040142.2(SCN2A):c.5364G>A (p.Glu1788=) rs199925238 0.00012
NM_001040142.2(SCN2A):c.5931T>C (p.Ser1977=) rs187728892 0.00011
NM_001040142.2(SCN2A):c.1759A>C (p.Ile587Leu) rs148275498 0.00010
NM_001040142.2(SCN2A):c.24G>A (p.Pro8=) rs149534277 0.00010
NM_001040142.2(SCN2A):c.2562+5A>G rs374738441 0.00010
NM_001040142.2(SCN2A):c.3123G>A (p.Pro1041=) rs147576541 0.00010
NM_001040142.2(SCN2A):c.4989C>T (p.Ile1663=) rs373347369 0.00010
NM_001040142.2(SCN2A):c.*1622T>C rs554984144 0.00008
NM_001040142.2(SCN2A):c.1725G>A (p.Ala575=) rs543538780 0.00008
NM_001040142.2(SCN2A):c.*1000G>T rs886055003 0.00007
NM_001040142.2(SCN2A):c.2673C>T (p.Ile891=) rs529842407 0.00007
NM_001040142.2(SCN2A):c.1959G>A (p.Val653=) rs200546427 0.00006
NM_001040142.2(SCN2A):c.1976G>A (p.Gly659Asp) rs368887417 0.00006
NM_001040142.2(SCN2A):c.*1264A>G rs951534441 0.00004
NM_001040142.2(SCN2A):c.3735T>C (p.Ala1245=) rs527970192 0.00004
NM_001040142.2(SCN2A):c.*1003G>C rs886055004 0.00003
NM_001040142.2(SCN2A):c.*1433A>G rs886055005 0.00003
NM_001040142.2(SCN2A):c.2005C>T (p.Leu669Phe) rs766470088 0.00003
NM_001040142.2(SCN2A):c.4260G>T (p.Thr1420=) rs138241682 0.00003
NM_001040142.2(SCN2A):c.5620G>A (p.Ala1874Thr) rs753977894 0.00003
NM_001040142.2(SCN2A):c.562C>T (p.Arg188Trp) rs121917748 0.00003
NM_001040142.2(SCN2A):c.*690G>A rs1322180654 0.00002
NM_001040142.2(SCN2A):c.-51-1729T>C rs886054998 0.00002
NM_001040142.2(SCN2A):c.3521-15T>C rs886055000 0.00002
NM_001040142.2(SCN2A):c.*1753C>T rs74881341 0.00001
NM_001040142.2(SCN2A):c.*1778A>C rs886055006 0.00001
NM_001040142.2(SCN2A):c.*291G>T rs886055002 0.00001
NM_001040142.2(SCN2A):c.*535A>G rs770662807 0.00001
NM_001040142.2(SCN2A):c.1035-15C>G rs761906987 0.00001
NM_001040142.2(SCN2A):c.122G>A (p.Arg41His) rs754993031 0.00001
NM_001040142.2(SCN2A):c.1441G>A (p.Gly481Arg) rs369488860 0.00001
NM_001040142.2(SCN2A):c.1542T>C (p.Ser514=) rs780072216 0.00001
NM_001040142.2(SCN2A):c.1939G>A (p.Ala647Thr) rs548056312 0.00001
NM_001040142.2(SCN2A):c.1984A>G (p.Thr662Ala) rs796053111 0.00001
NM_001040142.2(SCN2A):c.2046G>T (p.Lys682Asn) rs756493732 0.00001
NM_001040142.2(SCN2A):c.2051G>A (p.Arg684Gln) rs146949852 0.00001
NM_001040142.2(SCN2A):c.2175C>T (p.Cys725=) rs768349308 0.00001
NM_001040142.2(SCN2A):c.2766C>T (p.Arg922=) rs202006528 0.00001
NM_001040142.2(SCN2A):c.3461G>A (p.Gly1154Glu) rs995379212 0.00001
NM_001040142.2(SCN2A):c.386+3535C>A rs891087983 0.00001
NM_001040142.2(SCN2A):c.4134C>T (p.Ser1378=) rs145465905 0.00001
NM_001040142.2(SCN2A):c.4775T>C (p.Ile1592Thr) rs199641159 0.00001
NM_001040142.2(SCN2A):c.5544T>C (p.Ser1848=) rs761713186 0.00001
NM_001040142.2(SCN2A):c.5677T>A (p.Tyr1893Asn) rs1702040004 0.00001
NM_001040142.2(SCN2A):c.5788A>G (p.Ser1930Gly) rs886055001 0.00001
NM_001040142.2(SCN2A):c.5995G>T (p.Asp1999Tyr) rs1702058510 0.00001
NM_001040142.2(SCN2A):c.609T>C (p.Tyr203=) rs1697310016 0.00001
NM_001040142.2(SCN2A):c.628C>G (p.Leu210Val) rs764647930 0.00001
NM_001040142.2(SCN2A):c.83G>A (p.Arg28His) rs1007052146 0.00001
NM_001040142.2(SCN2A):c.982T>G (p.Phe328Val) rs781204054 0.00001
NC_000002.11:g.(?_166152283)_(166246384_?)dup
NM_001040142.2(SCN2A):c.*1209C>T rs1702103045
NM_001040142.2(SCN2A):c.*1359G>T rs1702107512
NM_001040142.2(SCN2A):c.*1592G>A rs902494496
NM_001040142.2(SCN2A):c.*1825A>G rs886055007
NM_001040142.2(SCN2A):c.*2454C>T rs886055008
NM_001040142.2(SCN2A):c.*264C>T rs1702070313
NM_001040142.2(SCN2A):c.*47G>A rs377384458
NM_001040142.2(SCN2A):c.*47G>T rs377384458
NM_001040142.2(SCN2A):c.*535A>T rs770662807
NM_001040142.2(SCN2A):c.*987A>G rs958016137
NM_001040142.2(SCN2A):c.-42A>C rs755901960
NM_001040142.2(SCN2A):c.-51-1652A>G rs886054999
NM_001040142.2(SCN2A):c.-51-1720dup rs1553563950
NM_001040142.2(SCN2A):c.-51-1721_-51-1720dup rs1553563950
NM_001040142.2(SCN2A):c.-51-1733A>T rs76193610
NM_001040142.2(SCN2A):c.-51-1733_-51-1732dup rs886054996
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insAA rs1553563951
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insAAAT rs780674346
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insAAT rs780674346
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insAATT rs780674346
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insAATTT rs780674346
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insAGATT rs780674346
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insGAT rs780674346
NM_001040142.2(SCN2A):c.-51-1733_-51-1732insGATT rs780674346
NM_001040142.2(SCN2A):c.-51-1734G>A rs886054990
NM_001040142.2(SCN2A):c.-51-1734_-51-1733del rs1553563943
NM_001040142.2(SCN2A):c.-51-1735_-51-1733del rs886054992
NM_001040142.2(SCN2A):c.121C>T (p.Arg41Cys) rs747086776
NM_001040142.2(SCN2A):c.1271T>G (p.Val424Gly) rs796053181
NM_001040142.2(SCN2A):c.1384-2A>G rs1574571769
NM_001040142.2(SCN2A):c.1972G>A (p.Gly658Arg) rs767183298
NM_001040142.2(SCN2A):c.1976G>T (p.Gly659Val) rs368887417
NM_001040142.2(SCN2A):c.2157A>G (p.Glu719=) rs779574574
NM_001040142.2(SCN2A):c.2512C>A (p.Leu838Ile) rs2467999242
NM_001040142.2(SCN2A):c.2539T>C (p.Ser847Pro) rs1699366480
NM_001040142.2(SCN2A):c.2566C>T (p.Arg856Ter) rs1553579225
NM_001040142.2(SCN2A):c.2619C>A (p.Ile873=) rs868404050
NM_001040142.2(SCN2A):c.2627A>G (p.Asn876Ser) rs1553579282
NM_001040142.2(SCN2A):c.2636G>T (p.Gly879Val) rs1559376694
NM_001040142.2(SCN2A):c.2638G>A (p.Ala880Thr) rs1574641522
NM_001040142.2(SCN2A):c.2659G>C (p.Val887Leu) rs1574641605
NM_001040142.2(SCN2A):c.2664G>A (p.Leu888=) rs1699478461
NM_001040142.2(SCN2A):c.2674G>A (p.Val892Ile) rs121917751
NM_001040142.2(SCN2A):c.2725G>A (p.Glu909Lys) rs1553579374
NM_001040142.2(SCN2A):c.2854G>T (p.Glu952Ter) rs1553579543
NM_001040142.2(SCN2A):c.2872A>G (p.Met958Val) rs2105319172
NM_001040142.2(SCN2A):c.2902G>T (p.Val968Leu) rs2468008596
NM_001040142.2(SCN2A):c.2977G>C (p.Ala993Pro) rs2468035658
NM_001040142.2(SCN2A):c.3007C>A (p.Leu1003Ile) rs121917754
NM_001040142.2(SCN2A):c.3043G>A (p.Asp1015Asn) rs747451714
NM_001040142.2(SCN2A):c.3065G>C (p.Arg1022Pro) rs376774884
NM_001040142.2(SCN2A):c.3209dup (p.Asp1070fs) rs2105337298
NM_001040142.2(SCN2A):c.3374del (p.Glu1125fs) rs587780450
NM_001040142.2(SCN2A):c.3399+1del rs2105337639
NM_001040142.2(SCN2A):c.3457G>A (p.Glu1153Lys) rs200138205
NM_001040142.2(SCN2A):c.3631G>A (p.Glu1211Lys) rs387906684
NM_001040142.2(SCN2A):c.3637T>G (p.Phe1213Val) rs797044946
NM_001040142.2(SCN2A):c.3664A>C (p.Ser1222Arg) rs1574697769
NM_001040142.2(SCN2A):c.3849+4A>G rs1700958754
NM_001040142.2(SCN2A):c.3913dup (p.Leu1305fs) rs1701138696
NM_001040142.2(SCN2A):c.3956G>A (p.Arg1319Gln) rs121917753
NM_001040142.2(SCN2A):c.3988C>T (p.Leu1330Phe) rs121917749
NM_001040142.2(SCN2A):c.3997G>T (p.Ala1333Ser) rs796053132
NM_001040142.2(SCN2A):c.4008del (p.Ile1337fs)
NM_001040142.2(SCN2A):c.4191G>C (p.Arg1397Ser) rs768253580
NM_001040142.2(SCN2A):c.4216G>T (p.Asp1406Tyr)
NM_001040142.2(SCN2A):c.4243C>A (p.Leu1415Ile) rs1574716524
NM_001040142.2(SCN2A):c.4316T>G (p.Leu1439Ter) rs2105384553
NM_001040142.2(SCN2A):c.4379G>A (p.Gly1460Asp) rs2468126518
NM_001040142.2(SCN2A):c.4517C>G (p.Ser1506Ter) rs1287017958
NM_001040142.2(SCN2A):c.4579T>G (p.Phe1527Val) rs2468149374
NM_001040142.2(SCN2A):c.4635G>C (p.Met1545Ile) rs1574746733
NM_001040142.2(SCN2A):c.4635G>T (p.Met1545Ile) rs1574746733
NM_001040142.2(SCN2A):c.4687C>G (p.Leu1563Val) rs121917750
NM_001040142.2(SCN2A):c.4688T>G (p.Leu1563Arg) rs1574746935
NM_001040142.2(SCN2A):c.4713T>G (p.Ile1571Met) rs2468149865
NM_001040142.2(SCN2A):c.4766A>G (p.Tyr1589Cys) rs1553463119
NM_001040142.2(SCN2A):c.4801G>A (p.Val1601Met) rs1553463140
NM_001040142.2(SCN2A):c.4879G>C (p.Val1627Leu)
NM_001040142.2(SCN2A):c.4886G>A (p.Arg1629His) rs796053157
NM_001040142.2(SCN2A):c.4913G>C (p.Arg1638Pro) rs1702006258
NM_001040142.2(SCN2A):c.4946T>C (p.Leu1649Pro) rs1702008208
NM_001040142.2(SCN2A):c.4976C>T (p.Ala1659Val) rs1060503101
NM_001040142.2(SCN2A):c.507del (p.Glu169fs) rs1574554892
NM_001040142.2(SCN2A):c.5113A>C (p.Ile1705Leu) rs1574752113
NM_001040142.2(SCN2A):c.5117G>C (p.Cys1706Ser) rs1553463513
NM_001040142.2(SCN2A):c.5131A>G (p.Thr1711Ala) rs2468158340
NM_001040142.2(SCN2A):c.5183C>T (p.Pro1728Leu) rs2105402674
NM_001040142.2(SCN2A):c.5333A>T (p.Asn1778Ile) rs1574752700
NM_001040142.2(SCN2A):c.5551C>T (p.Arg1851Trp) rs1553463718
NM_001040142.2(SCN2A):c.5588A>G (p.Lys1863Arg) rs2468159721
NM_001040142.2(SCN2A):c.5644C>G (p.Arg1882Gly) rs796053166
NM_001040142.2(SCN2A):c.5918C>G (p.Pro1973Arg) rs1574754680
NM_001040142.2(SCN2A):c.5958T>A (p.Phe1986Leu) rs1702056050
NM_001040142.2(SCN2A):c.605C>T (p.Ala202Val) rs1553567409
NM_001040142.2(SCN2A):c.620T>C (p.Phe207Ser) rs1064796691
NM_001040142.2(SCN2A):c.634A>G (p.Asn212Asp) rs2105244906
NM_001040142.2(SCN2A):c.638T>C (p.Val213Ala) rs1574556643
NM_001040142.2(SCN2A):c.668G>A (p.Arg223Gln) rs121917752
NM_001040142.2(SCN2A):c.681A>G (p.Thr227=) rs2228987
NM_001040142.2(SCN2A):c.754A>G (p.Met252Val) rs387906687
NM_001040142.2(SCN2A):c.781G>A (p.Val261Met) rs1057520413
NM_001040142.2(SCN2A):c.788C>T (p.Ala263Val) rs387906686

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