ClinVar Miner

List of variants reported as benign for Xanthinuria type II

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Total variants: 90
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HGVS dbSNP gnomAD frequency
NM_017947.4(MOCOS):c.475C>A (p.Arg159=) rs646424 0.99420
NM_017947.4(MOCOS):c.550A>G (p.Ser184Gly) rs540967 0.99215
NM_017947.4(MOCOS):c.674A>G (p.His225Arg) rs623558 0.99207
NM_017947.4(MOCOS):c.1164A>G (p.Pro388=) rs667667 0.99200
NM_017947.4(MOCOS):c.509C>T (p.Thr170Ile) rs623053 0.90992
NM_000379.4(XDH):c.3030T>C (p.Phe1010=) rs1884725 0.77423
NM_000379.4(XDH):c.3276+12A>G rs1366813 0.75380
NM_000379.4(XDH):c.3052-12C>G rs13415401 0.74590
NM_000379.4(XDH):c.2211C>T (p.Ile737=) rs2295475 0.24290
NM_017947.4(MOCOS):c.2107C>A (p.His703Asn) rs594445 0.22874
NM_017947.4(MOCOS):c.2600T>C (p.Val867Ala) rs1057251 0.10346
NM_017947.4(MOCOS):c.66C>A (p.Ser22Arg) rs113873219 0.07041
NM_000379.4(XDH):c.2107A>G (p.Ile703Val) rs17011368 0.05740
NM_000379.4(XDH):c.3717G>A (p.Glu1239=) rs207440 0.05236
NM_017947.4(MOCOS):c.359G>A (p.Ser120Asn) rs3744900 0.04153
NM_000379.4(XDH):c.627G>A (p.Glu209=) rs45575032 0.02778
NM_000379.4(XDH):c.837C>T (p.Val279=) rs4407290 0.02692
NM_000379.4(XDH):c.514G>A (p.Gly172Arg) rs45523133 0.02328
NM_000379.4(XDH):c.1936A>G (p.Ile646Val) rs17323225 0.02243
NM_000379.4(XDH):c.1686+8C>T rs17395224 0.02225
NM_000379.4(XDH):c.1184A>T (p.Lys395Met) rs34929837 0.02155
NM_000379.4(XDH):c.1134C>T (p.Gly378=) rs45612738 0.02057
NM_000379.4(XDH):c.3084C>T (p.Gly1028=) rs45604135 0.01858
NM_000379.4(XDH):c.1509C>G (p.Gly503=) rs45612839 0.01566
NM_000379.4(XDH):c.1329G>A (p.Lys443=) rs45471294 0.01418
NM_017947.4(MOCOS):c.142+11C>A rs141031604 0.01418
NM_017947.4(MOCOS):c.15G>A (p.Ala5=) rs145568479 0.01199
NM_017947.4(MOCOS):c.2276A>G (p.Glu759Gly) rs77772031 0.01073
NM_017947.4(MOCOS):c.2599G>A (p.Val867Met) rs79823152 0.00979
NM_017947.4(MOCOS):c.1465C>T (p.Arg489Cys) rs35980997 0.00937
NM_017947.4(MOCOS):c.981G>A (p.Ala327=) rs35497696 0.00711
NM_017947.4(MOCOS):c.1992A>G (p.Glu664=) rs55701019 0.00592
NM_017947.4(MOCOS):c.1062G>A (p.Gln354=) rs141361512 0.00568
NM_000379.4(XDH):c.3375A>G (p.Thr1125=) rs45592238 0.00556
NM_000379.4(XDH):c.1857-4G>A rs17395175 0.00541
NM_000379.4(XDH):c.3405-15T>C rs141728694 0.00516
NM_017947.4(MOCOS):c.1724T>C (p.Leu575Pro) rs114735250 0.00499
NM_000379.4(XDH):c.1751A>C (p.Asp584Ala) rs45491693 0.00492
NM_000379.4(XDH):c.3937A>G (p.Lys1313Glu) rs141335716 0.00485
NM_000379.4(XDH):c.3951+14C>G rs201055814 0.00484
NM_017947.4(MOCOS):c.309G>A (p.Ala103=) rs149639104 0.00391
NM_000379.4(XDH):c.397G>A (p.Glu133Lys) rs45447191 0.00362
NM_000379.4(XDH):c.3271G>C (p.Val1091Leu) rs45619033 0.00328
NM_017947.4(MOCOS):c.1309A>G (p.Asn437Asp) rs35264715 0.00322
NM_017947.4(MOCOS):c.142+20T>C rs373431975 0.00309
NM_017947.4(MOCOS):c.1539A>G (p.Ala513=) rs76486529 0.00309
NM_000379.4(XDH):c.405C>T (p.Thr135=) rs72549370 0.00299
NM_000379.4(XDH):c.495+15C>T rs183572308 0.00280
NM_000379.4(XDH):c.1629C>T (p.Phe543=) rs140651875 0.00250
NM_000379.4(XDH):c.1856+7G>A rs184028774 0.00228
NM_000379.4(XDH):c.2634T>C (p.Ile878=) rs146994573 0.00224
NM_017947.4(MOCOS):c.2270+17C>T rs142380976 0.00215
NM_000379.4(XDH):c.882C>T (p.Pro294=) rs138246330 0.00195
NM_000379.4(XDH):c.1427+15C>A rs116569100 0.00186
NM_000379.4(XDH):c.2037A>C (p.Thr679=) rs139998082 0.00129
NM_017947.4(MOCOS):c.1589C>T (p.Ser530Leu) rs145294379 0.00115
NM_000379.4(XDH):c.636T>C (p.Phe212=) rs140225517 0.00095
NM_017947.4(MOCOS):c.1908G>A (p.Leu636=) rs147207715 0.00076
NM_000379.4(XDH):c.3326A>C (p.Asn1109Thr) rs45547640 0.00060
NM_000379.4(XDH):c.1911C>T (p.Ser637=) rs142197675 0.00058
NM_017947.4(MOCOS):c.941+20G>A rs571989443 0.00047
NM_000379.4(XDH):c.793+19G>A rs45625137 0.00043
NM_017947.4(MOCOS):c.1326G>A (p.Lys442=) rs147875201 0.00043
NM_000379.4(XDH):c.670C>T (p.Arg224Trp) rs147533056 0.00040
NM_000379.4(XDH):c.3771G>A (p.Ser1257=) rs45594136 0.00028
NM_000379.4(XDH):c.1669G>A (p.Asp557Asn) rs201792967 0.00026
NM_017947.4(MOCOS):c.363G>A (p.Thr121=) rs376254012 0.00026
NM_000379.4(XDH):c.2794G>A (p.Ala932Thr) rs141291583 0.00018
NM_017947.4(MOCOS):c.1798-19C>T rs201335005 0.00014
NM_000379.4(XDH):c.1617G>T (p.Leu539=) rs117399514 0.00013
NM_000379.4(XDH):c.3789G>A (p.Pro1263=) rs202077714 0.00011
NM_000379.4(XDH):c.3148-17G>A rs368920281 0.00007
NM_000379.4(XDH):c.1990G>A (p.Val664Ile) rs201301387 0.00005
NM_000379.4(XDH):c.2013G>A (p.Val671=) rs200635805 0.00005
NM_017947.4(MOCOS):c.1425G>A (p.Leu475=) rs531863176 0.00001
NM_000379.4(XDH):c.1663C>T (p.Pro555Ser) rs45577338
NM_000379.4(XDH):c.1885G>A (p.Val629Ile) rs148464316
NM_000379.4(XDH):c.1980+19del
NM_000379.4(XDH):c.2100+19_2100+22del rs45446491
NM_000379.4(XDH):c.2592C>T (p.His864=) rs368056609
NM_000379.4(XDH):c.2969+66dup rs11408029
NM_000379.4(XDH):c.307-11G>A
NM_000379.4(XDH):c.3586-17C>T
NM_000379.4(XDH):c.3586-21_3586-20del rs531981113
NM_000379.4(XDH):c.434-19dup rs747562658
NM_000379.4(XDH):c.495+14C>T
NM_017947.4(MOCOS):c.1072G>A (p.Val358Met) rs678560
NM_017947.4(MOCOS):c.142+16_142+19dup rs780090086
NM_017947.4(MOCOS):c.143-21_143-13del rs749356320
NM_017947.4(MOCOS):c.2039+17C>G rs567458

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