ClinVar Miner

List of variants in gene KMT2A reported as benign for not provided

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Gene type:
ClinVar version:
Total variants: 158
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HGVS dbSNP gnomAD frequency
NM_001197104.2(KMT2A):c.4820-45T>C rs562780 0.87322
NM_001197104.2(KMT2A):c.5004+226T>C rs537975 0.72720
NM_001197104.2(KMT2A):c.4333-168G>A rs572126 0.71878
NM_001197104.2(KMT2A):c.3569+331C>T rs7941217 0.11372
NM_001197104.2(KMT2A):c.7254C>T (p.Asn2418=) rs2071702 0.07440
NM_001197104.2(KMT2A):c.4087-148T>A rs9332796 0.05353
NM_001197104.2(KMT2A):c.10754+162G>A rs9332846 0.04689
NM_001197104.2(KMT2A):c.11071+236C>T rs9332852 0.04109
NM_001197104.2(KMT2A):c.5679A>G (p.Leu1893=) rs7107305 0.04025
NM_001197104.2(KMT2A):c.5802+34T>G rs7123835 0.04025
NM_001197104.2(KMT2A):c.6506-190G>A rs9332835 0.04006
NM_001197104.2(KMT2A):c.4284A>C (p.Ile1428=) rs9332801 0.04002
NM_001197104.2(KMT2A):c.5289+55G>A rs2276045 0.03998
NM_001197104.2(KMT2A):c.4697-177G>A rs9332810 0.02516
NM_001197104.2(KMT2A):c.3569+47G>T rs9332786 0.02404
NM_001197104.2(KMT2A):c.3156+87T>A rs9332775 0.02107
NM_001197104.2(KMT2A):c.8961T>A (p.Thr2987=) rs9332842 0.01910
NM_001197104.2(KMT2A):c.89C>G (p.Ala30Gly) rs9332745 0.01573
NM_001197104.2(KMT2A):c.10209G>A (p.Pro3403=) rs9332843 0.00817
NM_001197104.2(KMT2A):c.7689A>G (p.Ser2563=) rs9332840 0.00784
NM_001197104.2(KMT2A):c.3634+27C>A rs9332791 0.00719
NM_001197104.2(KMT2A):c.4218+20A>G rs9332798 0.00681
NM_001197104.2(KMT2A):c.158C>T (p.Ala53Val) rs9332747 0.00631
NM_001197104.2(KMT2A):c.1504G>A (p.Glu502Lys) rs9332772 0.00614
NM_001197104.2(KMT2A):c.6243C>T (p.Val2081=) rs9332834 0.00496
NM_001197104.2(KMT2A):c.3291A>G (p.Pro1097=) rs9332783 0.00438
NM_001197104.2(KMT2A):c.10900+26A>G rs151318976 0.00297
NM_001197104.2(KMT2A):c.4819+20A>G rs189128796 0.00252
NM_001197104.2(KMT2A):c.4219-25C>T rs141644096 0.00234
NM_001197104.2(KMT2A):c.8040C>T (p.Asp2680=) rs145943534 0.00223
NM_001197104.2(KMT2A):c.6699C>T (p.Thr2233=) rs36026884 0.00207
NM_001197104.2(KMT2A):c.6698C>T (p.Thr2233Ile) rs144271443 0.00206
NM_001197104.2(KMT2A):c.10396A>G (p.Thr3466Ala) rs112678346 0.00198
NM_001197104.2(KMT2A):c.10318A>G (p.Ile3440Val) rs117099452 0.00190
NM_001197104.2(KMT2A):c.4254A>T (p.Gly1418=) rs147072909 0.00178
NM_001197104.2(KMT2A):c.9039T>A (p.Gly3013=) rs142875797 0.00175
NM_001197104.2(KMT2A):c.11072-44C>T rs112584352 0.00138
NM_001197104.2(KMT2A):c.5631G>A (p.Ala1877=) rs147764171 0.00118
NM_001197104.2(KMT2A):c.1974C>T (p.Pro658=) rs9332773 0.00114
NM_001197104.2(KMT2A):c.5664+32A>T rs189156873 0.00111
NM_001197104.2(KMT2A):c.10547G>A (p.Gly3516Glu) rs149137886 0.00110
NM_001197104.2(KMT2A):c.6572G>A (p.Arg2191Gln) rs141727765 0.00109
NM_001197104.2(KMT2A):c.2965C>T (p.Leu989Phe) rs139989306 0.00101
NM_001197104.2(KMT2A):c.3974G>A (p.Ser1325Asn) rs149404438 0.00097
NM_001197104.2(KMT2A):c.9391G>A (p.Gly3131Ser) rs150804738 0.00097
NM_001197104.2(KMT2A):c.4326T>C (p.His1442=) rs141961986 0.00093
NM_001197104.2(KMT2A):c.10850T>C (p.Leu3617Pro) rs146191865 0.00089
NM_001197104.2(KMT2A):c.6009C>T (p.Asp2003=) rs77421119 0.00086
NM_001197104.2(KMT2A):c.8457C>T (p.Ser2819=) rs142499035 0.00078
NM_001197104.2(KMT2A):c.10475C>T (p.Ala3492Val) rs145249825 0.00076
NM_001197104.2(KMT2A):c.7304C>G (p.Ser2435Cys) rs76721917 0.00071
NM_001197104.2(KMT2A):c.1716G>T (p.Leu572=) rs566939193 0.00069
NM_001197104.2(KMT2A):c.3335-38A>G rs200807035 0.00066
NM_001197104.2(KMT2A):c.2726G>A (p.Gly909Asp) rs139227835 0.00065
NM_001197104.2(KMT2A):c.7183T>C (p.Ser2395Pro) rs142985138 0.00059
NM_001197104.2(KMT2A):c.10715T>G (p.Ile3572Ser) rs147014136 0.00051
NM_001197104.2(KMT2A):c.1810A>G (p.Met604Val) rs150328852 0.00046
NM_001197104.2(KMT2A):c.3684C>T (p.Ser1228=) rs369529777 0.00044
NM_001197104.2(KMT2A):c.6450A>G (p.Thr2150=) rs191483551 0.00041
NM_001197104.2(KMT2A):c.4479+17T>C rs202184506 0.00040
NM_001197104.2(KMT2A):c.5733G>A (p.Ala1911=) rs151337923 0.00036
NM_001197104.2(KMT2A):c.7983G>C (p.Lys2661Asn) rs142807735 0.00036
NM_001197104.2(KMT2A):c.2943A>G (p.Pro981=) rs146028064 0.00035
NM_001197104.2(KMT2A):c.8454C>G (p.Pro2818=) rs186489777 0.00035
NM_001197104.2(KMT2A):c.5802+12T>C rs138022952 0.00034
NM_001197104.2(KMT2A):c.8307T>C (p.His2769=) rs148437955 0.00034
NM_001197104.2(KMT2A):c.6957A>G (p.Ser2319=) rs149014176 0.00032
NM_001197104.2(KMT2A):c.502+10A>G rs372798047 0.00029
NM_001197104.2(KMT2A):c.6185C>T (p.Thr2062Ile) rs145061625 0.00028
NM_001197104.2(KMT2A):c.10836-46T>C rs191613432 0.00026
NM_001197104.2(KMT2A):c.3228T>C (p.Ala1076=) rs533037781 0.00025
NM_001197104.2(KMT2A):c.9904G>A (p.Ala3302Thr) rs551471898 0.00025
NM_001197104.2(KMT2A):c.3634+4G>A rs367948360 0.00024
NM_001197104.2(KMT2A):c.5289+5A>G rs568439743 0.00023
NM_001197104.2(KMT2A):c.8214G>A (p.Arg2738=) rs138868861 0.00023
NM_001197104.2(KMT2A):c.4369A>G (p.Lys1457Glu) rs201765973 0.00021
NM_001197104.2(KMT2A):c.6576C>T (p.Ser2192=) rs201483860 0.00021
NM_001197104.2(KMT2A):c.8632C>T (p.Leu2878=) rs150502030 0.00021
NM_001197104.2(KMT2A):c.10092C>T (p.His3364=) rs782320299 0.00019
NM_001197104.2(KMT2A):c.8965G>A (p.Glu2989Lys) rs143843795 0.00019
NM_001197104.2(KMT2A):c.147C>T (p.Gly49=) rs1402504913 0.00018
NM_001197104.2(KMT2A):c.7023A>C (p.Thr2341=) rs554266191 0.00017
NM_001197104.2(KMT2A):c.10746A>T (p.Ser3582=) rs9332844 0.00016
NM_001197104.2(KMT2A):c.4218+25G>T rs188216921 0.00016
NM_001197104.2(KMT2A):c.9165T>C (p.Asp3055=) rs143721596 0.00015
NM_001197104.2(KMT2A):c.6158+25G>C rs782350466 0.00014
NM_001197104.2(KMT2A):c.6685T>A (p.Ser2229Thr) rs367939528 0.00011
NM_001197104.2(KMT2A):c.5778G>A (p.Met1926Ile) rs200127166 0.00010
NM_001197104.2(KMT2A):c.5557+23G>A rs549240414 0.00009
NM_001197104.2(KMT2A):c.6492G>A (p.Pro2164=) rs145452548 0.00009
NM_001197104.2(KMT2A):c.807G>A (p.Lys269=) rs149767877 0.00008
NM_001197104.2(KMT2A):c.8650T>C (p.Leu2884=) rs9332841 0.00008
NM_001197104.2(KMT2A):c.10609A>G (p.Thr3537Ala) rs782816466 0.00005
NM_001197104.2(KMT2A):c.3799G>A (p.Val1267Ile) rs376303494 0.00005
NM_001197104.2(KMT2A):c.4686C>G (p.Leu1562=) rs200727599 0.00005
NM_001197104.2(KMT2A):c.4889G>A (p.Arg1630Gln) rs143317202 0.00005
NM_001197104.2(KMT2A):c.227G>C (p.Gly76Ala) rs533795027 0.00004
NM_001197104.2(KMT2A):c.6964T>A (p.Ser2322Thr) rs9332837 0.00004
NM_001197104.2(KMT2A):c.7255G>A (p.Glu2419Lys) rs782181274 0.00004
NM_001197104.2(KMT2A):c.10009T>C (p.Leu3337=) rs782531013 0.00003
NM_001197104.2(KMT2A):c.10690C>T (p.Arg3564Trp) rs555310772 0.00003
NM_001197104.2(KMT2A):c.218G>A (p.Gly73Glu) rs782233787 0.00003
NM_001197104.2(KMT2A):c.5589G>T (p.Glu1863Asp) rs565762131 0.00003
NM_001197104.2(KMT2A):c.6590G>A (p.Arg2197His) rs370899148 0.00003
NM_001197104.2(KMT2A):c.3907C>G (p.Leu1303Val) rs782491835 0.00002
NM_001197104.2(KMT2A):c.5498A>G (p.Lys1833Arg) rs782153029 0.00002
NM_001197104.2(KMT2A):c.6650G>A (p.Arg2217Lys) rs782483583 0.00002
NM_001197104.2(KMT2A):c.9585G>A (p.Pro3195=) rs371553631 0.00002
NM_001197104.2(KMT2A):c.10267A>G (p.Ile3423Val) rs1443235781 0.00001
NM_001197104.2(KMT2A):c.10313C>T (p.Thr3438Met) rs782425634 0.00001
NM_001197104.2(KMT2A):c.10375A>G (p.Asn3459Asp) rs782596573 0.00001
NM_001197104.2(KMT2A):c.10401G>T (p.Gly3467=) rs782369249 0.00001
NM_001197104.2(KMT2A):c.10836-28T>C rs782173052 0.00001
NM_001197104.2(KMT2A):c.135G>A (p.Pro45=) rs9332746 0.00001
NM_001197104.2(KMT2A):c.1529A>G (p.His510Arg) rs782129160 0.00001
NM_001197104.2(KMT2A):c.1884G>A (p.Glu628=) rs781959189 0.00001
NM_001197104.2(KMT2A):c.2004T>G (p.Ser668=) rs147102502 0.00001
NM_001197104.2(KMT2A):c.4087-23A>G rs781857853 0.00001
NM_001197104.2(KMT2A):c.6506-8_6506-7del rs1565301846 0.00001
NM_001197104.2(KMT2A):c.6693C>T (p.Ser2231=) rs569463074 0.00001
NM_001197104.2(KMT2A):c.680C>A (p.Thr227Asn) rs1385508131 0.00001
NM_001197104.2(KMT2A):c.6844C>T (p.His2282Tyr) rs1950519775 0.00001
NM_001197104.2(KMT2A):c.7136G>A (p.Arg2379Lys) rs1221263820 0.00001
NM_001197104.2(KMT2A):c.7475A>G (p.Asp2492Gly) rs782556163 0.00001
NM_001197104.2(KMT2A):c.7514C>A (p.Pro2505His) rs782617745 0.00001
NM_001197104.2(KMT2A):c.8976G>A (p.Met2992Ile) rs781817780 0.00001
NM_001197104.2(KMT2A):c.9584C>T (p.Pro3195Leu) rs147412214 0.00001
NM_001197104.2(KMT2A):c.10415A>G (p.Gln3472Arg)
NM_001197104.2(KMT2A):c.10900+103dup rs58992225
NM_001197104.2(KMT2A):c.1197G>A (p.Val399=)
NM_001197104.2(KMT2A):c.137T>C (p.Val46Ala) rs2134152933
NM_001197104.2(KMT2A):c.1628C>G (p.Thr543Arg) rs1203844881
NM_001197104.2(KMT2A):c.188CGG[4] (p.Ala67del) rs781936420
NM_001197104.2(KMT2A):c.2420G>A (p.Gly807Glu) rs2134268457
NM_001197104.2(KMT2A):c.2759A>G (p.Asp920Gly) rs1591376313
NM_001197104.2(KMT2A):c.3156+12C>T
NM_001197104.2(KMT2A):c.3478G>A (p.Gly1160Ser)
NM_001197104.2(KMT2A):c.369C>T (p.Gly123=) rs1949195411
NM_001197104.2(KMT2A):c.4086+270AAG[5] rs45545941
NM_001197104.2(KMT2A):c.4086+271del rs59972810
NM_001197104.2(KMT2A):c.4207_4218+22dup rs781831426
NM_001197104.2(KMT2A):c.432+10689A>G
NM_001197104.2(KMT2A):c.4696+12del
NM_001197104.2(KMT2A):c.4696+12dup
NM_001197104.2(KMT2A):c.5004+22dup
NM_001197104.2(KMT2A):c.5290-146C>T rs9332819
NM_001197104.2(KMT2A):c.5961+37dup rs57102960
NM_001197104.2(KMT2A):c.6158+22_6158+26del rs567074292
NM_001197104.2(KMT2A):c.6288G>C (p.Arg2096Ser) rs1195439793
NM_001197104.2(KMT2A):c.6295_6319+13dup rs1555045505
NM_001197104.2(KMT2A):c.6410G>T (p.Cys2137Phe) rs1591279353
NM_001197104.2(KMT2A):c.643T>C (p.Ser215Pro)
NM_001197104.2(KMT2A):c.6506-94AT[8] rs147292591
NM_001197104.2(KMT2A):c.6647T>C (p.Met2216Thr) rs371772102
NM_001197104.2(KMT2A):c.7070C>G (p.Pro2357Arg) rs9332838
NM_001197104.2(KMT2A):c.8445A>G (p.Thr2815=)
NM_001197104.2(KMT2A):c.9724A>G (p.Thr3242Ala)
NM_001197104.2(KMT2A):c.9962C>T (p.Thr3321Ile)

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