ClinVar Miner

List of variants in gene LYST reported as benign for not provided

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 125
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HGVS dbSNP gnomAD frequency
NM_000081.4(LYST):c.4863-115T>C rs2011390 0.80554
NM_000081.4(LYST):c.10701+255T>G rs12122253 0.57739
NM_000081.4(LYST):c.11195+124G>A rs12092604 0.55911
NM_000081.4(LYST):c.10564+43G>A rs7541057 0.55363
NM_000081.4(LYST):c.193-233G>A rs7529320 0.52194
NM_000081.4(LYST):c.193-290A>G rs7522053 0.52179
NM_000081.4(LYST):c.5785-307G>A rs6668388 0.52095
NM_000081.4(LYST):c.8801+77G>A rs6429275 0.52091
NM_000081.4(LYST):c.9315+52C>A rs6667717 0.51918
NM_000081.4(LYST):c.6121+142T>C rs12565325 0.41973
NM_000081.4(LYST):c.1251A>G (p.Gln417=) rs1063128 0.41864
NM_000081.4(LYST):c.1683A>G (p.Leu561=) rs3820553 0.41844
NM_000081.4(LYST):c.3940-198G>A rs7552221 0.41833
NM_000081.4(LYST):c.4956A>G (p.Leu1652=) rs6696123 0.41826
NM_000081.4(LYST):c.5373G>A (p.Lys1791=) rs2273584 0.41769
NM_000081.4(LYST):c.11196-88A>G rs3819013 0.41520
NM_000081.4(LYST):c.10565-115C>T rs3754232 0.41426
NM_000081.4(LYST):c.6881+44A>G rs3738519 0.30798
NM_000081.4(LYST):c.8151+296A>G rs2753329 0.28407
NM_000081.4(LYST):c.7972+151A>G rs10926565 0.28170
NM_000081.4(LYST):c.192+252G>A rs2180758 0.22288
NM_000081.4(LYST):c.153A>C (p.Gly51=) rs11464 0.13219
NM_000081.4(LYST):c.284-269T>C rs11589975 0.11746
NM_000081.4(LYST):c.2364-210T>C rs41315862 0.11074
NM_000081.4(LYST):c.2355T>C (p.Leu785=) rs3768066 0.10928
NM_000081.4(LYST):c.5023+41C>T rs72763416 0.10897
NM_000081.4(LYST):c.3712+272A>G rs72763423 0.10894
NM_000081.4(LYST):c.4006+166G>T rs72763422 0.10869
NM_000081.4(LYST):c.9926-217T>C rs74480470 0.09681
NM_000081.4(LYST):c.4392C>T (p.Asn1464=) rs11583387 0.09239
NM_000081.4(LYST):c.10940+91G>T rs12062769 0.08591
NM_000081.4(LYST):c.11039-24C>T rs12088737 0.08504
NM_000081.4(LYST):c.7059+256G>A rs75345270 0.07518
NM_000081.4(LYST):c.2363+116A>G rs3768064 0.07490
NM_000081.4(LYST):c.4117-164C>T rs12078019 0.07198
NM_000081.4(LYST):c.9044+252C>T rs6691262 0.06237
NM_000081.4(LYST):c.2316C>T (p.Asp772=) rs16832868 0.05899
NM_000081.4(LYST):c.5847G>C (p.Gln1949His) rs6665568 0.05891
NM_000081.4(LYST):c.4007-290C>T rs941688 0.05879
NM_000081.4(LYST):c.6630A>G (p.Glu2210=) rs34466404 0.05877
NM_000081.4(LYST):c.11038+97C>T rs7517694 0.05865
NM_000081.4(LYST):c.11038+59C>T rs12058506 0.05418
NM_000081.4(LYST):c.10374+75_10374+76insCCAGGGACACAGTA rs113373611 0.04738
NM_000081.4(LYST):c.9045-135C>T rs9628694 0.04458
NM_000081.4(LYST):c.9107-143A>G rs12094430 0.04442
NM_000081.4(LYST):c.574T>G (p.Leu192Val) rs7524261 0.04386
NM_000081.4(LYST):c.2363+248A>G rs57930868 0.04349
NM_000081.4(LYST):c.3393+77A>G rs112086468 0.04343
NM_000081.4(LYST):c.5460+119C>G rs12078638 0.04343
NM_000081.4(LYST):c.5024-43T>G rs7543060 0.04336
NM_000081.4(LYST):c.3394-90T>C rs10465636 0.04332
NM_000081.4(LYST):c.3393+254A>T rs13376598 0.04331
NM_000081.4(LYST):c.5922+101C>T rs59221600 0.04328
NM_000081.4(LYST):c.4117-292G>A rs113187379 0.04327
NM_000081.4(LYST):c.3393+62A>G rs112842013 0.04320
NM_000081.4(LYST):c.5922+100T>C rs58085361 0.04270
NM_000081.4(LYST):c.8411G>A (p.Gly2804Asp) rs35333195 0.04044
NM_000081.4(LYST):c.9560+252T>A rs12081644 0.04035
NM_000081.4(LYST):c.6122-52C>T rs6698287 0.04033
NM_000081.4(LYST):c.4863-322T>C rs7548677 0.04031
NM_000081.4(LYST):c.3989A>C (p.Asp1330Ala) rs74641549 0.04030
NM_000081.4(LYST):c.9106+58A>G rs77550273 0.04027
NM_000081.4(LYST):c.3713-26G>A rs9803890 0.04021
NM_000081.4(LYST):c.2364-252C>T rs77797229 0.04019
NM_000081.4(LYST):c.7229+245G>A rs112010120 0.04012
NM_000081.4(LYST):c.4863-127_4863-126insTGTT rs10655365 0.03855
NM_000081.4(LYST):c.283+252C>G rs6664854 0.03752
NM_000081.4(LYST):c.3050G>A (p.Ser1017Asn) rs10465613 0.03661
NM_000081.4(LYST):c.5461-58T>G rs12081913 0.03655
NM_000081.4(LYST):c.8151+49G>A rs12238984 0.02968
NM_000081.4(LYST):c.7857T>C (p.His2619=) rs34160788 0.02966
NM_000081.4(LYST):c.6900G>A (p.Leu2300=) rs10926586 0.02954
NM_000081.4(LYST):c.5922+192C>T rs28450425 0.02951
NM_000081.4(LYST):c.3393+226A>C rs13376601 0.02948
NM_000081.4(LYST):c.7137A>C (p.Leu2379=) rs61738992 0.02884
NM_000081.4(LYST):c.11039-38A>G rs116211415 0.02670
NM_000081.4(LYST):c.10564+79A>G rs13374850 0.02657
NM_000081.4(LYST):c.10375-128T>C rs13374768 0.02640
NM_000081.4(LYST):c.10375-135C>T rs13374320 0.02639
NM_000081.4(LYST):c.10375-164C>T rs13374325 0.02627
NM_000081.4(LYST):c.7793T>A (p.Phe2598Tyr) rs34642241 0.02388
NM_000081.4(LYST):c.192+36T>C rs78672331 0.02374
NM_000081.4(LYST):c.9628-37A>G rs75969672 0.02250
NM_000081.4(LYST):c.3555+74C>T rs10489646 0.02233
NM_000081.4(LYST):c.283+272G>T rs74439184 0.01760
NM_000081.4(LYST):c.3939+60T>C rs73108814 0.01686
NM_000081.4(LYST):c.10701+316C>T rs116553564 0.01617
NM_000081.4(LYST):c.9627+243G>A rs76816584 0.01535
NM_000081.4(LYST):c.5945C>T (p.Thr1982Ile) rs146591126 0.00669
NM_000081.4(LYST):c.10941-7C>A rs72761794 0.00614
NM_000081.4(LYST):c.10800+4G>T rs41308172 0.00441
NM_000081.4(LYST):c.3359G>T (p.Ser1120Ile) rs143223086 0.00302
NM_000081.4(LYST):c.6782G>A (p.Arg2261His) rs147791378 0.00031
NM_000081.4(LYST):c.2908A>C (p.Ile970Leu) rs539146732 0.00001
NM_000081.4(LYST):c.6216A>G (p.Val2072=) rs371248013 0.00001
NM_000081.4(LYST):c.*1831A>C
NM_000081.4(LYST):c.10375-93_10375-90del rs72108356
NM_000081.4(LYST):c.10701+110dup rs5781839
NM_000081.4(LYST):c.10801-157dup rs138592380
NM_000081.4(LYST):c.11268-205C>T rs3754230
NM_000081.4(LYST):c.11268-5del rs36014994
NM_000081.4(LYST):c.2364-104A>C rs78003821
NM_000081.4(LYST):c.3393+105AT[6] rs59550727
NM_000081.4(LYST):c.3393+138_3393+142del rs200558668
NM_000081.4(LYST):c.3556-323A>C rs10926730
NM_000081.4(LYST):c.3712+306G>A rs75468096
NM_000081.4(LYST):c.3939+31A>T rs74148828
NM_000081.4(LYST):c.4689-149C>T rs12078578
NM_000081.4(LYST):c.4863-94del rs552690643
NM_000081.4(LYST):c.5461-3del rs557545474
NM_000081.4(LYST):c.5922+102dup rs11443965
NM_000081.4(LYST):c.6122-13del rs201404906
NM_000081.4(LYST):c.7229+50CTTTT[6] rs71174459
NM_000081.4(LYST):c.7229+50CTTTT[7] rs71174459
NM_000081.4(LYST):c.7229+50CTTTT[9] rs71174459
NM_000081.4(LYST):c.7460+204G>A rs2273585
NM_000081.4(LYST):c.8801+205G>T rs7515184
NM_000081.4(LYST):c.9044+232_9044+235del rs879629562
NM_000081.4(LYST):c.9044+232_9044+237del rs71174456
NM_000081.4(LYST):c.9044+234CA[14] rs4006790
NM_000081.4(LYST):c.9044+234CA[15] rs4006790
NM_000081.4(LYST):c.9044+234CA[19] rs4006790
NM_000081.4(LYST):c.9044+234CA[20] rs4006790
NM_000081.4(LYST):c.9784+46AAC[7] rs3831362
NM_000081.4(LYST):c.9784+46AAC[9] rs3831362

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