List of variants in gene PTPRQ reported as likely benign for not provided

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

Total variants: 108

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HGVS	dbSNP	gnomAD frequency
NM_001145026.2(PTPRQ):c.1040-44C>T	rs73345986	0.01338
NM_001145026.2(PTPRQ):c.1541-229G>A	rs73347718	0.01329
NM_001145026.2(PTPRQ):c.2456-56C>T	rs56978316	0.01326
NM_001145026.2(PTPRQ):c.1359+283T>G	rs60419022	0.01321
NM_001145026.2(PTPRQ):c.6024+163G>A	rs1182772	0.01232
NM_001145026.2(PTPRQ):c.*78T>A	rs114143939	0.01045
NM_001145026.2(PTPRQ):c.5613-26T>C	rs12321385	0.00964
NM_001145026.2(PTPRQ):c.3155-221C>T	rs11114501	0.00936
NM_001145026.2(PTPRQ):c.3154+161G>A	rs12304453	0.00935
NM_001145026.2(PTPRQ):c.4919-59G>A	rs12319264	0.00911
NM_001145026.2(PTPRQ):c.5230+265C>A	rs140943037	0.00884
NM_001145026.2(PTPRQ):c.1883-248C>T	rs11114480	0.00883
NM_001145026.2(PTPRQ):c.2455+83A>G	rs184106664	0.00855
NM_001145026.2(PTPRQ):c.4016-209G>A	rs143556799	0.00811
NM_001145026.2(PTPRQ):c.3874-313C>T	rs12426824	0.00775
NM_001145026.2(PTPRQ):c.2557+148T>A	rs114065774	0.00772
NM_001145026.2(PTPRQ):c.4731+52C>T	rs114119838	0.00724
NM_001145026.2(PTPRQ):c.2986-65T>A	rs114562587	0.00671
NM_001145026.2(PTPRQ):c.5230+72T>G	rs147313700	0.00655
NM_001145026.2(PTPRQ):c.5612+284T>C	rs147508782	0.00652
NM_001145026.2(PTPRQ):c.1233G>A (p.Thr411=)	rs185755490	0.00640
NM_001145026.2(PTPRQ):c.164-140T>C	rs142077279	0.00622
NM_001145026.2(PTPRQ):c.911-130A>T	rs182734094	0.00611
NM_001145026.2(PTPRQ):c.163+257C>T	rs78776778	0.00599
NM_001145026.2(PTPRQ):c.5061T>C (p.Pro1687=)	rs186848048	0.00581
NM_001145026.2(PTPRQ):c.2558-225A>T	rs556646380	0.00580
NM_001145026.2(PTPRQ):c.2558-226dup	rs527761264	0.00580
NM_001145026.2(PTPRQ):c.1541-181C>T	rs139455725	0.00563
NM_001145026.2(PTPRQ):c.163+87T>C	rs74625318	0.00551
NM_001145026.2(PTPRQ):c.5164-121T>A	rs566385534	0.00536
NM_001145026.2(PTPRQ):c.6192+58T>C	rs149574384	0.00525
NM_001145026.2(PTPRQ):c.5164-105_5164-104dup	rs397842293	0.00496
NM_001145026.2(PTPRQ):c.4918+133A>G	rs139118921	0.00486
NM_001145026.2(PTPRQ):c.5163+256A>G	rs147895705	0.00484
NM_001145026.2(PTPRQ):c.2273-21C>A	rs183499320	0.00474
NM_001145026.2(PTPRQ):c.2557+121C>T	rs139828341	0.00467
NM_001145026.2(PTPRQ):c.3874-334G>A	rs186847417	0.00439
NM_001145026.2(PTPRQ):c.5230+253A>C	rs565393538	0.00426
NC_000012.12:g.80444133_80444134insA	rs1565706749	0.00398
NC_000012.12:g.80444137T>A	rs1438074322	0.00397
NC_000012.12:g.80444141T>A	rs1331555937	0.00382
NM_001145026.2(PTPRQ):c.5943-199C>T	rs183744229	0.00366
NM_001145026.2(PTPRQ):c.3607T>C (p.Tyr1203His)	rs61729273	0.00354
NM_001145026.2(PTPRQ):c.5902G>A (p.Glu1968Lys)	rs61696072	0.00335
NM_001145026.2(PTPRQ):c.1186+18del	rs562118304	0.00332
NM_001145026.2(PTPRQ):c.6602+308T>C	rs139622459	0.00327
NM_001145026.2(PTPRQ):c.202G>A (p.Gly68Arg)	rs61729303	0.00318
NM_001145026.2(PTPRQ):c.2599T>C (p.Ser867Pro)	rs143156047	0.00310
NM_001145026.2(PTPRQ):c.5196A>C (p.Pro1732=)	rs187900644	0.00280
NM_001145026.2(PTPRQ):c.6165G>A (p.Ser2055=)	rs112147802	0.00255
NM_001145026.2(PTPRQ):c.1883-98C>T	rs527926743	0.00249
NM_001145026.2(PTPRQ):c.2993C>T (p.Thr998Ile)	rs12316867	0.00241
NM_001145026.2(PTPRQ):c.201C>T (p.Val67=)	rs187435968	0.00237
NM_001145026.2(PTPRQ):c.1710C>T (p.Ser570=)	rs140978858	0.00198
NM_001145026.2(PTPRQ):c.4629A>C (p.Glu1543Asp)	rs139474037	0.00132
NM_001145026.2(PTPRQ):c.3313A>G (p.Thr1105Ala)	rs186746372	0.00126
NM_001145026.2(PTPRQ):c.4666A>C (p.Ser1556Arg)	rs143126619	0.00113
NM_001145026.2(PTPRQ):c.255G>A (p.Arg85=)	rs184871373	0.00081
NM_001145026.2(PTPRQ):c.54+8G>A	rs372908419	0.00059
NM_001145026.2(PTPRQ):c.4287T>G (p.Val1429=)	rs537753247	0.00056
NM_001145026.2(PTPRQ):c.4152T>C (p.Val1384=)	rs186073366	0.00044
NM_001145026.2(PTPRQ):c.4016-9T>C	rs558244275	0.00043
NM_001145026.2(PTPRQ):c.5814C>T (p.Gly1938=)	rs377249620	0.00040
NM_001145026.2(PTPRQ):c.2327T>C (p.Ile776Thr)	rs147541734	0.00036
NM_001145026.2(PTPRQ):c.937G>A (p.Val313Ile)	rs370185461	0.00036
NM_001145026.2(PTPRQ):c.2703T>C (p.Ile901=)	rs117654491	0.00035
NM_001145026.2(PTPRQ):c.6568G>T (p.Ala2190Ser)	rs199746225	0.00034
NM_001145026.2(PTPRQ):c.1847A>G (p.Gln616Arg)	rs527967292	0.00030
NM_001145026.2(PTPRQ):c.2547G>A (p.Thr849=)	rs368115315	0.00028
NM_001145026.2(PTPRQ):c.3726G>A (p.Pro1242=)	rs147316024	0.00028
NM_001145026.2(PTPRQ):c.6147C>T (p.Asp2049=)	rs780203002	0.00021
NM_001145026.2(PTPRQ):c.6526G>A (p.Ala2176Thr)	rs201371823	0.00021
NM_001145026.2(PTPRQ):c.1702+4A>T	rs370321499	0.00016
NM_001145026.2(PTPRQ):c.2034C>T (p.Thr678=)	rs545505456	0.00016
NM_001145026.2(PTPRQ):c.5928T>C (p.Tyr1976=)	rs561333222	0.00016
NM_001145026.2(PTPRQ):c.2445A>G (p.Gln815=)	rs780815237	0.00015
NM_001145026.2(PTPRQ):c.5687-6del	rs575788194	0.00012
NM_001145026.2(PTPRQ):c.54+7C>T	rs750110116	0.00009
NM_001145026.2(PTPRQ):c.189C>T (p.Ala63=)	rs558947480	0.00004
NM_001145026.2(PTPRQ):c.39G>C (p.Gly13=)	rs571284105	0.00003
NM_001145026.2(PTPRQ):c.1701A>G (p.Gln567=)	rs1349104911	0.00001
NM_001145026.2(PTPRQ):c.4218A>C (p.Val1406=)	rs1386107770	0.00001
NC_000012.12:g.80436384T>C
NM_001145026.2(PTPRQ):c.1187-24TTTC[4]	rs562555844
NM_001145026.2(PTPRQ):c.1187-24TTTC[6]	rs562555844
NM_001145026.2(PTPRQ):c.1341G>C (p.Leu447Phe)
NM_001145026.2(PTPRQ):c.1425G>A (p.Glu475=)	rs2120645251
NM_001145026.2(PTPRQ):c.1443G>A (p.Ser481=)	rs373744641
NM_001145026.2(PTPRQ):c.147_158del (p.Thr51_Thr54del)	rs368946018
NM_001145026.2(PTPRQ):c.2557+275G>A	rs190507070
NM_001145026.2(PTPRQ):c.2678+73A>C	rs183377202
NM_001145026.2(PTPRQ):c.2840-184_2840-175del	rs150311915
NM_001145026.2(PTPRQ):c.2847C>T (p.Ser949=)	rs777680240
NM_001145026.2(PTPRQ):c.3446-5dup	rs544769020
NM_001145026.2(PTPRQ):c.3873+7T>C
NM_001145026.2(PTPRQ):c.390+18G>T
NM_001145026.2(PTPRQ):c.391-3040A>G
NM_001145026.2(PTPRQ):c.4144A>T (p.Thr1382Ser)
NM_001145026.2(PTPRQ):c.4168A>G (p.Met1390Val)
NM_001145026.2(PTPRQ):c.5164-121_5164-118del	rs200657301
NM_001145026.2(PTPRQ):c.5164-121_5164-120del	rs535351524
NM_001145026.2(PTPRQ):c.51A>C (p.Thr17=)
NM_001145026.2(PTPRQ):c.5389+161TAAA[2]	rs144756074
NM_001145026.2(PTPRQ):c.5686+28dup
NM_001145026.2(PTPRQ):c.5943-217dup	rs146553698
NM_001145026.2(PTPRQ):c.6453+12del
NM_001145026.2(PTPRQ):c.6476G>A (p.Arg2159Gln)
NM_001145026.2(PTPRQ):c.910+1135T>C

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