ClinVar Miner

List of variants in gene SYNGAP1 reported as likely benign for not provided

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Gene type:
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Total variants: 121
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HGVS dbSNP gnomAD frequency
NM_006772.3(SYNGAP1):c.67+186G>A rs78525454 0.01804
NM_006772.3(SYNGAP1):c.2116-92A>G rs113487504 0.01309
NM_006772.3(SYNGAP1):c.190-148A>G rs114840747 0.01200
NC_000006.12:g.33419822G>C rs9688415 0.01199
NM_006772.3(SYNGAP1):c.3885+157C>G rs116172817 0.01196
NM_006772.3(SYNGAP1):c.387+32G>A rs114505996 0.01173
NM_006772.3(SYNGAP1):c.68-277C>G rs116373967 0.01172
NM_006772.3(SYNGAP1):c.387+67G>A rs116550709 0.01169
NM_006772.3(SYNGAP1):c.1677-129_1677-128del rs567989593 0.00699
NM_006772.3(SYNGAP1):c.2295-209G>T rs115432767 0.00662
NM_006772.3(SYNGAP1):c.763-122C>T rs144595467 0.00619
NM_006772.3(SYNGAP1):c.295+87G>T rs540674955 0.00539
NM_006772.3(SYNGAP1):c.1491T>C (p.Tyr497=) rs72887798 0.00417
NC_000006.12:g.33419836C>A rs115074978 0.00410
NM_006772.3(SYNGAP1):c.510-51G>A rs775494760 0.00360
NM_006772.3(SYNGAP1):c.3273A>G (p.Leu1091=) rs145707539 0.00216
NM_006772.3(SYNGAP1):c.3582+7T>C rs370618729 0.00193
NM_006772.3(SYNGAP1):c.664-41C>T rs187391888 0.00145
NM_006772.3(SYNGAP1):c.3134C>G (p.Ala1045Gly) rs139759084 0.00108
NM_006772.3(SYNGAP1):c.1776A>G (p.Ser592=) rs150153477 0.00082
NM_006772.3(SYNGAP1):c.586T>C (p.Leu196=) rs145694123 0.00071
NM_006772.3(SYNGAP1):c.3324C>T (p.Ser1108=) rs139841529 0.00059
NM_006772.3(SYNGAP1):c.762+46C>T rs373333437 0.00038
NM_006772.3(SYNGAP1):c.1581C>T (p.Asp527=) rs202178663 0.00034
NM_006772.3(SYNGAP1):c.3408+29G>A rs149566869 0.00032
NM_006772.3(SYNGAP1):c.1913+36T>C rs199669547 0.00028
NM_006772.3(SYNGAP1):c.2658G>A (p.Ala886=) rs149467343 0.00024
NM_006772.3(SYNGAP1):c.2016G>A (p.Thr672=) rs57365292 0.00020
NM_006772.3(SYNGAP1):c.3495G>A (p.Ser1165=) rs200386206 0.00016
NM_006772.3(SYNGAP1):c.447A>G (p.Lys149=) rs544817923 0.00012
NM_006772.3(SYNGAP1):c.1455C>T (p.Arg485=) rs201107225 0.00011
NM_006772.3(SYNGAP1):c.1575G>A (p.Glu525=) rs139050190 0.00011
NM_006772.3(SYNGAP1):c.2337-10C>G rs371436958 0.00011
NM_006772.3(SYNGAP1):c.1158G>A (p.Gly386=) rs1443802147 0.00010
NM_006772.3(SYNGAP1):c.1812G>A (p.Ser604=) rs149727287 0.00009
NM_006772.3(SYNGAP1):c.2664C>T (p.Ala888=) rs759995681 0.00009
NM_006772.3(SYNGAP1):c.2242C>T (p.Leu748=) rs377301201 0.00008
NM_006772.3(SYNGAP1):c.3364G>A (p.Gly1122Ser) rs755386745 0.00008
NM_006772.3(SYNGAP1):c.228C>T (p.Ser76=) rs147049139 0.00007
NM_006772.3(SYNGAP1):c.2583G>A (p.Ser861=) rs375587730 0.00007
NM_006772.3(SYNGAP1):c.1311C>T (p.Pro437=) rs777952612 0.00006
NM_006772.3(SYNGAP1):c.1532-5C>G rs928381854 0.00006
NM_006772.3(SYNGAP1):c.2125C>T (p.Leu709=) rs543705054 0.00006
NM_006772.3(SYNGAP1):c.2394G>A (p.Pro798=) rs138404495 0.00006
NM_006772.3(SYNGAP1):c.3045T>C (p.Thr1015=) rs753746117 0.00006
NM_006772.3(SYNGAP1):c.2388A>G (p.Pro796=) rs756541754 0.00005
NM_006772.3(SYNGAP1):c.2845G>A (p.Gly949Ser) rs141341400 0.00005
NM_006772.3(SYNGAP1):c.2864C>T (p.Ser955Phe) rs753575634 0.00005
NM_006772.3(SYNGAP1):c.*4A>G rs781535944 0.00004
NM_006772.3(SYNGAP1):c.3834C>T (p.Pro1278=) rs555363112 0.00004
NM_006772.3(SYNGAP1):c.3913A>G (p.Thr1305Ala) rs749376396 0.00004
NM_006772.3(SYNGAP1):c.773G>A (p.Arg258His) rs538281267 0.00004
NM_006772.3(SYNGAP1):c.2520T>C (p.Ser840=) rs778341826 0.00003
NM_006772.3(SYNGAP1):c.33G>T (p.Gly11=) rs749949430 0.00003
NM_006772.3(SYNGAP1):c.3858A>T (p.Glu1286Asp) rs139853969 0.00003
NM_006772.3(SYNGAP1):c.4002C>T (p.Asn1334=) rs201509029 0.00003
NM_006772.3(SYNGAP1):c.1532-28C>A rs367839297 0.00002
NM_006772.3(SYNGAP1):c.2361C>T (p.Pro787=) rs775679543 0.00002
NM_006772.3(SYNGAP1):c.2418C>T (p.Phe806=) rs764203322 0.00002
NM_006772.3(SYNGAP1):c.3056G>A (p.Arg1019His) rs747078316 0.00002
NM_006772.3(SYNGAP1):c.372G>A (p.Ala124=) rs748895452 0.00002
NM_006772.3(SYNGAP1):c.1025A>G (p.Tyr342Cys) rs777562660 0.00001
NM_006772.3(SYNGAP1):c.1146A>G (p.Gly382=) rs1385235040 0.00001
NM_006772.3(SYNGAP1):c.1213C>T (p.Arg405Cys) rs751466510 0.00001
NM_006772.3(SYNGAP1):c.121C>T (p.Arg41Cys) rs762142487 0.00001
NM_006772.3(SYNGAP1):c.1224A>G (p.Thr408=) rs780138803 0.00001
NM_006772.3(SYNGAP1):c.1251T>C (p.Tyr417=) rs755250466 0.00001
NM_006772.3(SYNGAP1):c.1350A>G (p.Ala450=) rs751331097 0.00001
NM_006772.3(SYNGAP1):c.1730C>G (p.Ala577Gly) rs1761009822 0.00001
NM_006772.3(SYNGAP1):c.2157C>T (p.Asn719=) rs559061651 0.00001
NM_006772.3(SYNGAP1):c.2301C>T (p.Ile767=) rs775210377 0.00001
NM_006772.3(SYNGAP1):c.2324G>A (p.Arg775Gln) rs761691865 0.00001
NM_006772.3(SYNGAP1):c.2568C>T (p.Asn856=) rs137894267 0.00001
NM_006772.3(SYNGAP1):c.2592G>A (p.Ala864=) rs989713108 0.00001
NM_006772.3(SYNGAP1):c.2703G>A (p.Ala901=) rs769826724 0.00001
NM_006772.3(SYNGAP1):c.2943C>T (p.Gly981=) rs202074092 0.00001
NM_006772.3(SYNGAP1):c.3022G>A (p.Asp1008Asn) rs1156508338 0.00001
NM_006772.3(SYNGAP1):c.3171C>T (p.Ser1057=) rs761405990 0.00001
NM_006772.3(SYNGAP1):c.3198T>G (p.Pro1066=) rs781201249 0.00001
NM_006772.3(SYNGAP1):c.3308G>A (p.Arg1103His) rs764952741 0.00001
NM_006772.3(SYNGAP1):c.3369C>T (p.Gly1123=) rs779377737 0.00001
NM_006772.3(SYNGAP1):c.3780G>A (p.Lys1260=) rs993798547 0.00001
NM_006772.3(SYNGAP1):c.3922C>T (p.Arg1308Cys) rs918621494 0.00001
NM_006772.3(SYNGAP1):c.111C>A (p.Ser37=)
NM_006772.3(SYNGAP1):c.114G>T (p.Pro38=) rs370803544
NM_006772.3(SYNGAP1):c.1161T>G (p.Gly387=)
NM_006772.3(SYNGAP1):c.1194G>A (p.Pro398=)
NM_006772.3(SYNGAP1):c.1677-40TC[7] rs138475712
NM_006772.3(SYNGAP1):c.1914-32_1914-29del rs561866153
NM_006772.3(SYNGAP1):c.1914-59TG[12] rs112678454
NM_006772.3(SYNGAP1):c.1914-59TG[15] rs112678454
NM_006772.3(SYNGAP1):c.198C>G (p.Pro66=) rs73402305
NM_006772.3(SYNGAP1):c.2001C>A (p.Ile667=)
NM_006772.3(SYNGAP1):c.2015C>T (p.Thr672Met) rs1405483444
NM_006772.3(SYNGAP1):c.223G>A (p.Glu75Lys)
NM_006772.3(SYNGAP1):c.2852_2857del (p.His951_Gly952del)
NM_006772.3(SYNGAP1):c.2945A>G (p.Tyr982Cys) rs2151189482
NM_006772.3(SYNGAP1):c.3162T>G (p.Gly1054=)
NM_006772.3(SYNGAP1):c.3168C>A (p.Gly1056=)
NM_006772.3(SYNGAP1):c.3168_3179del (p.1053_1056SGGG[1]) rs774101585
NM_006772.3(SYNGAP1):c.3174T>G (p.Gly1058=) rs1485118493
NM_006772.3(SYNGAP1):c.3180T>G (p.Gly1060=)
NM_006772.3(SYNGAP1):c.3183C>G (p.Gly1061=) rs759449351
NM_006772.3(SYNGAP1):c.3348GGGCAGCGG[1] (p.1118SGG[1]) rs761763671
NM_006772.3(SYNGAP1):c.3372A>G (p.Gly1124=)
NM_006772.3(SYNGAP1):c.33G>A (p.Gly11=) rs749949430
NM_006772.3(SYNGAP1):c.371C>T (p.Ala124Val) rs776125498
NM_006772.3(SYNGAP1):c.3824G>T (p.Arg1275Leu) rs1057520146
NM_006772.3(SYNGAP1):c.388-30dup rs1255453970
NM_006772.3(SYNGAP1):c.388-3dup rs771107621
NM_006772.3(SYNGAP1):c.3936C>T (p.Ala1312=) rs774453156
NM_006772.3(SYNGAP1):c.3963A>C (p.Pro1321=) rs764754365
NM_006772.3(SYNGAP1):c.3963_3964del (p.Ala1322fs)
NM_006772.3(SYNGAP1):c.3968_3969insCCCCC (p.Pro1325fs)
NM_006772.3(SYNGAP1):c.3996G>A (p.Thr1332=)
NM_006772.3(SYNGAP1):c.4005C>T (p.Gly1335=) rs1561794001
NM_006772.3(SYNGAP1):c.510-199dup rs373773732
NM_006772.3(SYNGAP1):c.510-206_510-199dup rs373773732
NM_006772.3(SYNGAP1):c.510-55_510-53dup rs28381596
NM_006772.3(SYNGAP1):c.707C>T (p.Ala236Val) rs1166557922
NM_006772.3(SYNGAP1):c.820C>T (p.Leu274=) rs1325101897

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