ClinVar Miner

List of variants in gene CDH1 reported as benign

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 223
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HGVS dbSNP gnomAD frequency
NM_004360.4(CDH1):c.*2047A>G rs8045438 0.98944
NM_004360.5(CDH1):c.49-295A>C rs12932357 0.80482
NM_004360.5(CDH1):c.48+181G>C rs3743675 0.80468
NM_004360.5(CDH1):c.48+6C>T rs3743674 0.80384
NM_004360.5(CDH1):c.2076T>C (p.Ala692=) rs1801552 0.70379
NM_004360.4(CDH1):c.-124-161C>A rs16260 0.24474
NM_004360.5(CDH1):c.687+144G>A rs7188750 0.22846
NM_004360.5(CDH1):c.1008+132_1008+133insA rs33945588 0.20582
NM_004360.5(CDH1):c.1008+131_1008+132insA rs148398896 0.20574
NM_004360.5(CDH1):c.1937-302G>A rs16958383 0.19236
NM_004360.5(CDH1):c.*1120T>C rs13689 0.18034
NM_004360.5(CDH1):c.*54C>T rs1801026 0.17023
NM_004360.5(CDH1):c.2439+162C>T rs2012923 0.16282
NM_004360.5(CDH1):c.1565+242A>G rs8057342 0.14703
NM_004360.5(CDH1):c.1565+175C>T rs6499199 0.14662
NM_004360.5(CDH1):c.2439+163T>C rs2012924 0.12253
NM_004360.5(CDH1):c.1937-13T>C rs2276330 0.09635
NM_004360.5(CDH1):c.1711+209G>A rs33974436 0.09165
NM_004360.5(CDH1):c.2296-243T>C rs2276329 0.08681
NM_004360.5(CDH1):c.1320+178A>G rs9935130 0.08443
NM_004360.5(CDH1):c.*589C>T rs8049282 0.07789
NM_004360.5(CDH1):c.2164+322A>T rs10500545 0.07405
NC_000016.10:g.68736963C>A rs33953344 0.06776
NM_004360.5(CDH1):c.2165-213G>A rs9925080 0.05678
NM_004360.5(CDH1):c.2165-173G>A rs9925161 0.05620
NM_004360.5(CDH1):c.2439+162del rs747442279 0.04593
NM_004360.5(CDH1):c.2439+52G>A rs33965115 0.04435
NM_004360.5(CDH1):c.531+10G>C rs33963999 0.03907
NM_004360.5(CDH1):c.2253C>T (p.Asn751=) rs33964119 0.03869
NM_004360.5(CDH1):c.1320+205C>T rs34821784 0.03539
NM_004360.5(CDH1):c.48+5C>G rs77312180 0.03370
NM_004360.5(CDH1):c.1712-130T>C rs34597017 0.02604
NM_004360.5(CDH1):c.1320+45G>C rs33950903 0.02489
NM_004360.5(CDH1):c.1566-218A>T rs34245865 0.02255
NM_004360.5(CDH1):c.1896C>T (p.His632=) rs33969373 0.02054
NM_004360.5(CDH1):c.*621C>T rs33956791 0.02011
NM_004360.5(CDH1):c.*410A>T rs33956133 0.01714
NM_004360.5(CDH1):c.2634C>T (p.Gly878=) rs2229044 0.01638
NM_004360.5(CDH1):c.*1873G>A rs35779350 0.01533
NM_004360.5(CDH1):c.1712-52G>C rs34582129 0.01529
NM_004360.5(CDH1):c.1008+47T>C rs34374107 0.01435
NM_004360.5(CDH1):c.1849G>A (p.Ala617Thr) rs33935154 0.01412
NM_004360.5(CDH1):c.933C>G (p.Leu311=) rs35539711 0.00974
NM_004360.5(CDH1):c.2295+166C>T rs143044978 0.00799
NM_004360.4(CDH1):c.*2050T>A rs181705992 0.00746
NM_004360.5(CDH1):c.*1835T>C rs13339481 0.00738
NM_004360.5(CDH1):c.1711+47G>A rs35667437 0.00620
NM_004360.5(CDH1):c.*1662G>C rs33967108 0.00618
NM_004360.5(CDH1):c.*988G>A rs9282653 0.00604
NM_004360.5(CDH1):c.1137+86T>G rs35160345 0.00568
NM_004360.5(CDH1):c.1712-37T>G rs35831514 0.00513
NM_004360.5(CDH1):c.532-18C>T rs200673941 0.00398
NM_004360.5(CDH1):c.2439+22C>T rs34751606 0.00346
NM_004360.5(CDH1):c.833-16C>G rs33984587 0.00332
NM_004360.5(CDH1):c.1774G>A (p.Ala592Thr) rs35187787 0.00311
NM_004360.5(CDH1):c.1937-423G>A rs144719031 0.00304
NM_004360.5(CDH1):c.1680G>C (p.Thr560=) rs35741240 0.00261
NM_004360.5(CDH1):c.324A>G (p.Arg108=) rs116542018 0.00255
NM_004360.5(CDH1):c.345G>A (p.Thr115=) rs1801023 0.00236
NM_004360.5(CDH1):c.687+66A>G rs193267869 0.00197
NM_004360.5(CDH1):c.2292C>T (p.Asp764=) rs61747636 0.00159
NM_004360.5(CDH1):c.2440-6C>G rs139757930 0.00145
NM_004360.5(CDH1):c.1272C>T (p.Val424=) rs61756284 0.00143
NM_004360.5(CDH1):c.88C>A (p.Pro30Thr) rs139866691 0.00129
NM_004360.5(CDH1):c.388-44G>A rs368884824 0.00097
NM_004360.5(CDH1):c.2296-670T>A rs540884383 0.00078
NM_004360.5(CDH1):c.*1693G>T rs138279201 0.00069
NM_004360.5(CDH1):c.*746C>A rs140240766 0.00069
NM_004360.5(CDH1):c.2520C>T (p.Ser840=) rs140328601 0.00064
NM_004360.5(CDH1):c.2104G>A (p.Glu702Lys) rs149127230 0.00058
NM_004360.5(CDH1):c.2439+10C>T rs35236080 0.00057
NM_004360.5(CDH1):c.1744C>T (p.Leu582=) rs1801025 0.00045
NM_004360.5(CDH1):c.1138-3C>T rs36103202 0.00042
NM_004360.5(CDH1):c.*16C>T rs769544370 0.00041
NM_004360.5(CDH1):c.1239C>T (p.Tyr413=) rs36074916 0.00041
NM_004360.5(CDH1):c.808T>G (p.Ser270Ala) rs587776399 0.00038
NM_004360.5(CDH1):c.892G>A (p.Ala298Thr) rs142822590 0.00028
NM_004360.5(CDH1):c.303C>T (p.Tyr101=) rs150789339 0.00027
NM_004360.5(CDH1):c.2413G>A (p.Asp805Asn) rs200894246 0.00026
NM_004360.5(CDH1):c.1018A>G (p.Thr340Ala) rs116093741 0.00022
NM_004360.5(CDH1):c.2589C>T (p.Asn863=) rs115817750 0.00022
NM_004360.5(CDH1):c.33G>C (p.Leu11=) rs730881654 0.00022
NM_004360.5(CDH1):c.670C>T (p.Arg224Cys) rs200310662 0.00021
NM_004360.5(CDH1):c.1296C>T (p.Asn432=) rs187862045 0.00019
NM_004360.5(CDH1):c.2412C>T (p.Pro804=) rs202075199 0.00018
NM_004360.5(CDH1):c.1568A>G (p.Tyr523Cys) rs553907248 0.00016
NM_004360.5(CDH1):c.2329G>A (p.Asp777Asn) rs372989292 0.00015
NM_004360.5(CDH1):c.394G>A (p.Val132Ile) rs142498771 0.00015
NM_004360.5(CDH1):c.1353T>C (p.Ile451=) rs114192597 0.00014
NM_004360.5(CDH1):c.1409C>T (p.Thr470Ile) rs370864592 0.00012
NM_004360.5(CDH1):c.*8G>A rs201223411 0.00011
NM_004360.5(CDH1):c.1223C>T (p.Ala408Val) rs138135866 0.00011
NM_004360.5(CDH1):c.2512A>G (p.Ser838Gly) rs121964872 0.00011
NM_004360.5(CDH1):c.2643C>T (p.Asp881=) rs114708971 0.00011
NM_004360.5(CDH1):c.1711+9G>A rs368770384 0.00010
NM_004360.5(CDH1):c.2451G>A (p.Ala817=) rs149450874 0.00010
NM_004360.5(CDH1):c.1359C>T (p.His453=) rs114861467 0.00009
NM_004360.5(CDH1):c.1888C>G (p.Leu630Val) rs2276331 0.00009
NM_004360.5(CDH1):c.894C>T (p.Ala298=) rs139110184 0.00009
NM_004360.5(CDH1):c.1020G>A (p.Thr340=) rs61747632 0.00008
NM_004360.5(CDH1):c.1314A>G (p.Thr438=) rs547316616 0.00008
NM_004360.5(CDH1):c.387+5G>A rs113055163 0.00008
NM_004360.5(CDH1):c.1297G>A (p.Asp433Asn) rs199886166 0.00007
NM_004360.5(CDH1):c.1298A>G (p.Asp433Gly) rs376097289 0.00007
NM_004360.5(CDH1):c.*1691G>T rs373181046 0.00006
NM_004360.5(CDH1):c.1416C>A (p.Thr472=) rs139937234 0.00006
NM_004360.5(CDH1):c.1422C>T (p.Thr474=) rs375843744 0.00006
NM_004360.5(CDH1):c.2136G>T (p.Gly712=) rs763402728 0.00006
NM_004360.5(CDH1):c.2637C>T (p.Gly879=) rs141001592 0.00006
NM_004360.5(CDH1):c.393C>T (p.Ser131=) rs145430811 0.00006
NM_004360.5(CDH1):c.48+15_48+16del rs730881655 0.00006
NM_004360.5(CDH1):c.49-3C>T rs587782366 0.00006
NM_004360.5(CDH1):c.699C>T (p.His233=) rs115494727 0.00005
NM_004360.5(CDH1):c.1174G>A (p.Val392Ile) rs141864044 0.00004
NM_004360.5(CDH1):c.1224G>A (p.Ala408=) rs200161607 0.00004
NM_004360.5(CDH1):c.1392C>T (p.Val464=) rs373811706 0.00004
NM_004360.5(CDH1):c.2165-15C>A rs552874184 0.00004
NM_004360.5(CDH1):c.2280C>T (p.Gly760=) rs768547540 0.00004
NM_004360.5(CDH1):c.2494G>A (p.Val832Met) rs35572355 0.00004
NM_004360.5(CDH1):c.375C>A (p.Pro125=) rs773044699 0.00004
NM_004360.5(CDH1):c.84C>T (p.Cys28=) rs587780789 0.00004
NM_004360.5(CDH1):c.*209C>T rs35942505 0.00003
NM_004360.5(CDH1):c.1161C>T (p.Asn387=) rs111266450 0.00003
NM_004360.5(CDH1):c.1173C>T (p.Val391=) rs148080550 0.00003
NM_004360.5(CDH1):c.1689C>T (p.Ala563=) rs587780786 0.00003
NM_004360.5(CDH1):c.2331C>T (p.Asp777=) rs114265540 0.00003
NM_004360.5(CDH1):c.2514C>T (p.Ser838=) rs770974998 0.00003
NM_004360.5(CDH1):c.304G>A (p.Ala102Thr) rs368492235 0.00003
NM_004360.5(CDH1):c.499G>A (p.Glu167Lys) rs769076258 0.00003
NM_004360.5(CDH1):c.671G>A (p.Arg224His) rs201511530 0.00003
NM_004360.5(CDH1):c.753G>A (p.Thr251=) rs371996897 0.00003
NM_004360.5(CDH1):c.832+17G>C rs373179391 0.00003
NM_004360.5(CDH1):c.1118C>T (p.Pro373Leu) rs587782359 0.00002
NM_004360.5(CDH1):c.1273G>A (p.Val425Ile) rs570930882 0.00002
NM_004360.5(CDH1):c.1488C>T (p.Ser496=) rs751346548 0.00002
NM_004360.5(CDH1):c.188G>A (p.Arg63Gln) rs587780117 0.00002
NM_004360.5(CDH1):c.1977G>A (p.Glu659=) rs368243190 0.00002
NM_004360.5(CDH1):c.2079C>T (p.Gly693=) rs771993728 0.00002
NM_004360.5(CDH1):c.2103C>T (p.Val701=) rs730881656 0.00002
NM_004360.5(CDH1):c.2399G>A (p.Arg800His) rs370345996 0.00002
NM_004360.5(CDH1):c.269G>A (p.Arg90Gln) rs587782647 0.00002
NM_004360.5(CDH1):c.371G>A (p.Arg124His) rs115418995 0.00002
NM_004360.5(CDH1):c.388-8C>T rs774601444 0.00002
NM_004360.5(CDH1):c.510A>G (p.Pro170=) rs774962542 0.00002
NM_004360.5(CDH1):c.957T>A (p.Ile319=) rs549252135 0.00002
NM_004360.5(CDH1):c.*774A>G rs549231645 0.00001
NM_004360.5(CDH1):c.1009-14C>T rs368293695 0.00001
NM_004360.5(CDH1):c.1136C>T (p.Thr379Met) rs587782856 0.00001
NM_004360.5(CDH1):c.1138-13C>G rs1399457483 0.00001
NM_004360.5(CDH1):c.114G>C (p.Thr38=) rs786201492 0.00001
NM_004360.5(CDH1):c.1162G>A (p.Glu388Lys) rs372838203 0.00001
NM_004360.5(CDH1):c.1202C>A (p.Ala401Asp) rs150795245 0.00001
NM_004360.5(CDH1):c.1266A>G (p.Gln422=) rs776805501 0.00001
NM_004360.5(CDH1):c.1500C>T (p.Gly500=) rs781317341 0.00001
NM_004360.5(CDH1):c.1516A>G (p.Thr506Ala) rs114885938 0.00001
NM_004360.5(CDH1):c.163+8C>T rs863224396 0.00001
NM_004360.5(CDH1):c.1773C>T (p.Asn591=) rs373719554 0.00001
NM_004360.5(CDH1):c.2071G>A (p.Ala691Thr) rs876660560 0.00001
NM_004360.5(CDH1):c.2077G>A (p.Gly693Ser) rs386833398 0.00001
NM_004360.5(CDH1):c.2091G>A (p.Lys697=) rs61747635 0.00001
NM_004360.5(CDH1):c.2121T>C (p.Ile707=) rs764657974 0.00001
NM_004360.5(CDH1):c.2167C>T (p.Leu723=) rs142649208 0.00001
NM_004360.5(CDH1):c.2322G>A (p.Arg774=) rs150734856 0.00001
NM_004360.5(CDH1):c.2358C>T (p.Asp786=) rs760701558 0.00001
NM_004360.5(CDH1):c.2638G>A (p.Glu880Lys) rs34507583 0.00001
NM_004360.5(CDH1):c.27G>A (p.Ser9=) rs786201257 0.00001
NM_004360.5(CDH1):c.286A>G (p.Ile96Val) rs749306433 0.00001
NM_004360.5(CDH1):c.48+19C>T rs1413775908 0.00001
NM_004360.5(CDH1):c.546A>C (p.Lys182Asn) rs201141645 0.00001
NM_004360.5(CDH1):c.570C>T (p.Tyr190=) rs761753486 0.00001
NM_004360.5(CDH1):c.582C>T (p.Gly194=) rs786202924 0.00001
NM_004360.5(CDH1):c.602C>G (p.Pro201Arg) rs146777134 0.00001
NM_004360.5(CDH1):c.604G>A (p.Val202Ile) rs546716073 0.00001
NM_004360.5(CDH1):c.858C>A (p.Ala286=) rs876660354 0.00001
NM_004360.5(CDH1):c.867G>A (p.Ala289=) rs754143182 0.00001
NM_004360.5(CDH1):c.870C>T (p.Asp290=) rs755215407 0.00001
NM_004360.5(CDH1):c.879G>A (p.Val293=) rs778959722 0.00001
NM_004360.5(CDH1):c.897C>T (p.Ala299=) rs769799936 0.00001
GRCh37/hg19 16q22.1(chr16:68791306-68803324)x3
NM_004360.3:c.2164+17insA
NM_004360.4(CDH1):c.-276T>C rs34149581
NM_004360.4(CDH1):c.-294A>G
NM_004360.5(CDH1):c.*1176T>G rs9282654
NM_004360.5(CDH1):c.*221dup rs145920869
NM_004360.5(CDH1):c.1008+8dup rs1555515665
NM_004360.5(CDH1):c.1308G>A (p.Leu436=) rs557551011
NM_004360.5(CDH1):c.1320+186T>G rs8056633
NM_004360.5(CDH1):c.1320+35C>T
NM_004360.5(CDH1):c.1321-36C>T
NM_004360.5(CDH1):c.1416C>T (p.Thr472=) rs139937234
NM_004360.5(CDH1):c.1565C>T (p.Thr522Ile) rs863224725
NM_004360.5(CDH1):c.1566-7del
NM_004360.5(CDH1):c.1566-80C>G rs9934882
NM_004360.5(CDH1):c.164-14627G>A rs9929218
NM_004360.5(CDH1):c.1711+9G>C rs368770384
NM_004360.5(CDH1):c.1937-144del rs146046879
NM_004360.5(CDH1):c.1937-144dup rs146046879
NM_004360.5(CDH1):c.1937-266C>G rs73562605
NM_004360.5(CDH1):c.2164+17dup rs34939176
NM_004360.5(CDH1):c.2165-11dup
NM_004360.5(CDH1):c.2165-17C>T rs730881657
NM_004360.5(CDH1):c.2199G>A (p.Arg733=) rs1555517637
NM_004360.5(CDH1):c.2205G>A (p.Ala735=) rs138493551
NM_004360.5(CDH1):c.2295+14del
NM_004360.5(CDH1):c.2296-9dup
NM_004360.5(CDH1):c.2439+156_2439+170del rs761383817
NM_004360.5(CDH1):c.243T>C (p.Gly81=) rs765879351
NM_004360.5(CDH1):c.300C>G (p.Val100=) rs786201463
NM_004360.5(CDH1):c.408A>G (p.Gln136=) rs1060501229
NM_004360.5(CDH1):c.48+52_48+62dup rs199970622
NM_004360.5(CDH1):c.48+62_48+63insCGTGCCCCAGCCC rs45625236
NM_004360.5(CDH1):c.48+62_48+63insCGTGCCCCAGCCCTGCGCCC rs552723559
NM_004360.5(CDH1):c.49-8del
NM_004360.5(CDH1):c.49-8dup rs1240151598
NM_004360.5(CDH1):c.531+19del rs2152129873
NM_004360.5(CDH1):c.687+390_687+394dup rs536314715
NM_004360.5(CDH1):c.687+394dup rs536314715
NM_004360.5(CDH1):c.820G>A (p.Gly274Ser) rs781513008
NM_004360.5(CDH1):c.832+239del rs5817654
NM_004360.5(CDH1):c.832+239dup rs5817654
NM_004360.5(CDH1):c.833-267del rs1158343325
NM_004360.5(CDH1):c.833-268_833-267del rs1158343325
NM_004360.5(CDH1):c.907A>G (p.Thr303Ala) rs876660744

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