ClinVar Miner

List of variants in gene DNMT1 reported as likely benign by GeneDx

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 102
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HGVS dbSNP gnomAD frequency
NM_001130823.3(DNMT1):c.3116+208G>A rs35918857 0.01299
NM_001130823.3(DNMT1):c.3309+131C>T rs11879603 0.01093
NM_001130823.3(DNMT1):c.1492+243A>C rs147365451 0.00973
NM_001130823.3(DNMT1):c.569+217A>G rs144847575 0.00973
NM_001130823.3(DNMT1):c.3948+239G>A rs147522862 0.00820
NM_001130823.3(DNMT1):c.1009-217G>A rs148421381 0.00704
NM_001130823.3(DNMT1):c.3948+220G>A rs115310241 0.00700
NM_001130823.3(DNMT1):c.570-214G>A rs74686239 0.00700
NM_001130823.3(DNMT1):c.1281-234C>T rs146784379 0.00687
NM_001130823.3(DNMT1):c.1009-246C>A rs114872745 0.00646
NM_001130823.3(DNMT1):c.1009-247G>A rs115469698 0.00646
NM_001130823.3(DNMT1):c.4293+236T>G rs115805097 0.00644
NM_001130823.3(DNMT1):c.2266-240A>G rs115985654 0.00643
NM_001130823.3(DNMT1):c.803+283G>A rs113257434 0.00604
NC_000019.10:g.10195137C>T rs140526929 0.00603
NM_001130823.3(DNMT1):c.569+260C>G rs149423104 0.00549
NM_001130823.3(DNMT1):c.927-196G>A rs77186127 0.00513
NM_001130823.3(DNMT1):c.2895-310T>A rs146164261 0.00505
NM_001130823.3(DNMT1):c.804-57C>T rs188576364 0.00465
NM_001130823.3(DNMT1):c.1281-38G>A rs62106240 0.00430
NM_001130823.3(DNMT1):c.769-21T>G rs56093633 0.00430
NM_001130823.3(DNMT1):c.649-263T>G rs188674297 0.00344
NM_001130823.3(DNMT1):c.569+131G>A rs184225618 0.00131
NM_001130823.3(DNMT1):c.683+16A>C rs370399482 0.00119
NM_001130823.3(DNMT1):c.493+8C>T rs138998574 0.00107
NM_001130823.3(DNMT1):c.2382-15G>A rs111694626 0.00071
NM_001130823.3(DNMT1):c.2626G>A (p.Gly876Arg) rs62621087 0.00038
NM_001130823.3(DNMT1):c.1224C>T (p.Asn408=) rs199584370 0.00035
NM_001130823.3(DNMT1):c.803+11C>T rs377632120 0.00034
NM_001130823.3(DNMT1):c.1280+14C>G rs372425803 0.00032
NM_001130823.3(DNMT1):c.2010C>T (p.Gly670=) rs374476495 0.00027
NM_001130823.3(DNMT1):c.406C>T (p.Arg136Cys) rs138841970 0.00024
NM_001130823.3(DNMT1):c.493+1G>A rs975957081 0.00024
NM_001130823.3(DNMT1):c.3807-14C>T rs371376513 0.00023
NM_001130823.3(DNMT1):c.575C>T (p.Ala192Val) rs62621089 0.00023
NM_001130823.3(DNMT1):c.3524-16G>A rs199694630 0.00022
NM_001130823.3(DNMT1):c.3117-9C>T rs199546819 0.00019
NM_001130823.3(DNMT1):c.387C>T (p.Pro129=) rs369470867 0.00019
NM_001130823.3(DNMT1):c.4146G>A (p.Thr1382=) rs184125970 0.00017
NM_001130823.3(DNMT1):c.2475G>A (p.Ser825=) rs368834599 0.00016
NM_001130823.3(DNMT1):c.2020-10C>T rs369373339 0.00014
NM_001130823.3(DNMT1):c.3310-18C>T rs199617900 0.00014
NM_001130823.3(DNMT1):c.-45C>T rs375666082 0.00013
NM_001130823.3(DNMT1):c.2667C>T (p.Tyr889=) rs199832007 0.00013
NM_001130823.3(DNMT1):c.2587-19C>T rs199713998 0.00012
NM_001130823.3(DNMT1):c.4876G>A (p.Glu1626Lys) rs201774098 0.00011
NM_001130823.3(DNMT1):c.856G>A (p.Val286Met) rs368960099 0.00011
NM_001130823.3(DNMT1):c.868G>A (p.Glu290Lys) rs200024502 0.00011
NM_001130823.3(DNMT1):c.977A>C (p.Gln326Pro) rs143287044 0.00011
NM_001130823.3(DNMT1):c.1647C>T (p.Thr549=) rs751712217 0.00010
NM_001130823.3(DNMT1):c.489T>G (p.Ile163Met) rs532948016 0.00010
NM_001130823.3(DNMT1):c.1053A>G (p.Lys351=) rs139355567 0.00009
NM_001130823.3(DNMT1):c.1749C>T (p.Ala583=) rs569985466 0.00009
NM_001130823.3(DNMT1):c.3523+6C>T rs372240993 0.00009
NM_001130823.3(DNMT1):c.390A>G (p.Lys130=) rs373499917 0.00009
NM_001130823.3(DNMT1):c.4032G>A (p.Pro1344=) rs150774582 0.00009
NM_001130823.3(DNMT1):c.483T>C (p.Thr161=) rs764496230 0.00009
NM_001130823.3(DNMT1):c.2937C>T (p.Pro979=) rs150359172 0.00008
NM_001130823.3(DNMT1):c.919A>G (p.Lys307Glu) rs148831705 0.00008
NM_001130823.3(DNMT1):c.1534G>T (p.Ala512Ser) rs753794138 0.00007
NM_001130823.3(DNMT1):c.327C>T (p.Asn109=) rs144685297 0.00007
NM_001130823.3(DNMT1):c.1536G>A (p.Ala512=) rs764039807 0.00006
NM_001130823.3(DNMT1):c.2601C>T (p.Pro867=) rs200414033 0.00006
NM_001130823.3(DNMT1):c.3262G>A (p.Val1088Ile) rs776461147 0.00006
NM_001130823.3(DNMT1):c.3413C>G (p.Ser1138Cys) rs201308454 0.00006
NM_001130823.3(DNMT1):c.736C>T (p.Arg246Cys) rs201749864 0.00006
NM_001130823.3(DNMT1):c.2894+15G>A rs370596200 0.00005
NM_001130823.3(DNMT1):c.2118-26_2118-21del rs555899750 0.00004
NM_001130823.3(DNMT1):c.737G>A (p.Arg246His) rs771381056 0.00004
NM_001130823.3(DNMT1):c.885C>T (p.Asp295=) rs767084989 0.00004
NM_001130823.3(DNMT1):c.890A>G (p.Lys297Arg) rs201025441 0.00004
NM_001130823.3(DNMT1):c.1832+10C>T rs371792523 0.00003
NM_001130823.3(DNMT1):c.1116C>T (p.Cys372=) rs147382114 0.00002
NM_001130823.3(DNMT1):c.1707C>T (p.His569=) rs777372271 0.00002
NM_001130823.3(DNMT1):c.2622C>T (p.Asp874=) rs375136816 0.00002
NM_001130823.3(DNMT1):c.2835C>T (p.Asn945=) rs539948794 0.00002
NM_001130823.3(DNMT1):c.2913C>T (p.Pro971=) rs780156725 0.00002
NM_001130823.3(DNMT1):c.1064G>A (p.Arg355His) rs201945078 0.00001
NM_001130823.3(DNMT1):c.1131C>T (p.Asp377=) rs760064256 0.00001
NM_001130823.3(DNMT1):c.1245T>C (p.Tyr415=) rs574479254 0.00001
NM_001130823.3(DNMT1):c.2265+5C>A rs776977277 0.00001
NM_001130823.3(DNMT1):c.3668G>A (p.Arg1223His) rs757460628 0.00001
NM_001130823.3(DNMT1):c.3963C>T (p.Gly1321=) rs375300708 0.00001
NM_001130823.3(DNMT1):c.4116-9C>T rs1057520947 0.00001
NC_000019.10:g.10195126_10195128dup rs112600349
NC_000019.10:g.10195127_10195128dup rs112600349
NM_001130823.3(DNMT1):c.1008+43_1008+46del rs573823039
NM_001130823.3(DNMT1):c.1008+44_1008+46del rs573823039
NM_001130823.3(DNMT1):c.225+102TGA[9] rs3217302
NM_001130823.3(DNMT1):c.2587-18G>A rs761123463
NM_001130823.3(DNMT1):c.2720+8C>T rs1043815439
NM_001130823.3(DNMT1):c.2894+136_2894+137del rs553864921
NM_001130823.3(DNMT1):c.3117-182G>C rs141779159
NM_001130823.3(DNMT1):c.3310-114A>C rs57711346
NM_001130823.3(DNMT1):c.3949-149G>A rs73508838
NM_001130823.3(DNMT1):c.3949-9dup rs780030001
NM_001130823.3(DNMT1):c.4115+16C>T rs775701177
NM_001130823.3(DNMT1):c.4293+17A>G rs1416290728
NM_001130823.3(DNMT1):c.569+126C>T rs186792836
NM_001130823.3(DNMT1):c.648+29_648+30del rs148860408
NM_001130823.3(DNMT1):c.684-256dup rs201972370
NM_001130823.3(DNMT1):c.768+238TATTT[5] rs549830163

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