ClinVar Miner

List of variants in gene GLI3 reported as likely benign by PreventionGenetics, part of Exact Sciences

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Gene type:
ClinVar version:
Total variants: 81
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HGVS dbSNP gnomAD frequency
NM_000168.6(GLI3):c.2104-50C>T rs115463742 0.00406
NM_000168.6(GLI3):c.341G>A (p.Arg114Lys) rs146458902 0.00274
NM_000168.6(GLI3):c.1357-17C>G rs190600888 0.00256
NM_000168.6(GLI3):c.2373G>A (p.Pro791=) rs61754622 0.00241
NM_000168.6(GLI3):c.1243-40A>C rs77659679 0.00163
NM_000168.6(GLI3):c.679+40C>A rs367979286 0.00157
NM_000168.6(GLI3):c.1813-47G>A rs199956247 0.00115
NM_000168.6(GLI3):c.680-25C>T rs55872291 0.00110
NM_000168.6(GLI3):c.3208A>T (p.Thr1070Ser) rs150907867 0.00105
NM_000168.6(GLI3):c.*9A>G rs187024593 0.00090
NM_000168.6(GLI3):c.1386G>A (p.Lys462=) rs150161845 0.00080
NM_000168.6(GLI3):c.4005G>A (p.Pro1335=) rs149860242 0.00080
NM_000168.6(GLI3):c.3001G>A (p.Gly1001Ser) rs202182779 0.00054
NM_000168.6(GLI3):c.2245A>G (p.Ile749Val) rs140048578 0.00039
NM_000168.6(GLI3):c.4654A>C (p.Met1552Leu) rs151254859 0.00039
NM_000168.6(GLI3):c.3935T>G (p.Met1312Arg) rs199875457 0.00027
NM_000168.6(GLI3):c.3987C>T (p.Gly1329=) rs145859702 0.00027
NM_000168.6(GLI3):c.1028+3A>T rs368499795 0.00021
NM_000168.6(GLI3):c.3762T>C (p.Tyr1254=) rs148043302 0.00020
NM_000168.6(GLI3):c.567C>T (p.Pro189=) rs371984494 0.00018
NM_000168.6(GLI3):c.2966G>T (p.Arg989Leu) rs548918938 0.00016
NM_000168.6(GLI3):c.168C>T (p.Asn56=) rs376845825 0.00015
NM_000168.6(GLI3):c.2803G>A (p.Ala935Thr) rs148276775 0.00015
NM_000168.6(GLI3):c.3318A>C (p.Ala1106=) rs148780793 0.00015
NM_000168.6(GLI3):c.3509C>G (p.Ala1170Gly) rs143942705 0.00014
NM_000168.6(GLI3):c.1242+25C>T rs375904354 0.00013
NM_000168.6(GLI3):c.*11A>G rs139896177 0.00011
NM_000168.6(GLI3):c.2432-30C>T rs374365217 0.00011
NM_000168.6(GLI3):c.411T>C (p.Ile137=) rs200203051 0.00011
NM_000168.6(GLI3):c.936G>A (p.Thr312=) rs200965295 0.00010
NM_000168.6(GLI3):c.1740C>T (p.His580=) rs146154710 0.00008
NM_000168.6(GLI3):c.2286T>C (p.Ala762=) rs146150703 0.00008
NM_000168.6(GLI3):c.363C>T (p.His121=) rs150295615 0.00008
NM_000168.6(GLI3):c.1365C>T (p.Pro455=) rs544431683 0.00007
NM_000168.6(GLI3):c.4605C>T (p.Ser1535=) rs138272666 0.00007
NM_000168.6(GLI3):c.1992G>A (p.Ser664=) rs770030848 0.00006
NM_000168.6(GLI3):c.272A>G (p.His91Arg) rs768107926 0.00006
NM_000168.6(GLI3):c.1194G>A (p.Thr398=) rs148822237 0.00005
NM_000168.6(GLI3):c.2184C>T (p.Leu728=) rs149724824 0.00005
NM_000168.6(GLI3):c.240C>T (p.Asp80=) rs149400571 0.00005
NM_000168.6(GLI3):c.2961C>T (p.Tyr987=) rs528703005 0.00005
NM_000168.6(GLI3):c.3351G>A (p.Pro1117=) rs368061722 0.00005
NM_000168.6(GLI3):c.4427A>T (p.Asn1476Ile) rs138100963 0.00005
NM_000168.6(GLI3):c.1221C>T (p.Ser407=) rs369180011 0.00004
NM_000168.6(GLI3):c.3540G>A (p.Gly1180=) rs143551701 0.00004
NM_000168.6(GLI3):c.4731A>G (p.Ala1577=) rs750622081 0.00004
NM_000168.6(GLI3):c.4740A>G (p.Gln1580=) rs375653915 0.00004
NM_000168.6(GLI3):c.563C>A (p.Ser188Tyr) rs369926331 0.00004
NM_000168.6(GLI3):c.1356+10C>A rs765591867 0.00003
NM_000168.6(GLI3):c.3772C>G (p.Leu1258Val) rs754908186 0.00003
NM_000168.6(GLI3):c.3804C>T (p.Leu1268=) rs373193430 0.00003
NM_000168.6(GLI3):c.4080A>G (p.Pro1360=) rs147379052 0.00003
NM_000168.6(GLI3):c.474-3C>T rs750653037 0.00003
NM_000168.6(GLI3):c.743G>A (p.Arg248His) rs186337909 0.00003
NM_000168.6(GLI3):c.1902A>T (p.Pro634=) rs564676310 0.00002
NM_000168.6(GLI3):c.1641A>G (p.Lys547=) rs1175131665 0.00001
NM_000168.6(GLI3):c.2994G>A (p.Pro998=) rs780902726 0.00001
NM_000168.6(GLI3):c.3261C>T (p.Asn1087=) rs370714837 0.00001
NM_000168.6(GLI3):c.3312C>T (p.Asn1104=) rs770842648 0.00001
NM_000168.6(GLI3):c.4620G>A (p.Thr1540=) rs1480518255 0.00001
NM_000168.6(GLI3):c.4680G>A (p.Gly1560=) rs760205624 0.00001
NM_000168.6(GLI3):c.901G>A (p.Asp301Asn) rs752246768 0.00001
NM_000168.6(GLI3):c.*15dup rs886038264
NM_000168.6(GLI3):c.1029-22dup rs559579130
NM_000168.6(GLI3):c.1062C>G (p.Pro354=) rs1446107833
NM_000168.6(GLI3):c.1242+42C>G rs772766325
NM_000168.6(GLI3):c.1356+10C>T rs765591867
NM_000168.6(GLI3):c.1357-9T>A rs1583801330
NM_000168.6(GLI3):c.1497C>T (p.His499=) rs539144173
NM_000168.6(GLI3):c.1911T>C (p.His637=) rs886038265
NM_000168.6(GLI3):c.2003C>T (p.Pro668Leu) rs143009880
NM_000168.6(GLI3):c.2083G>A (p.Val695Ile) rs199606102
NM_000168.6(GLI3):c.2104-6del rs768262204
NM_000168.6(GLI3):c.2232C>A (p.Ile744=) rs772276953
NM_000168.6(GLI3):c.3006G>A (p.Val1002=)
NM_000168.6(GLI3):c.3400C>T (p.Leu1134=) rs2484372877
NM_000168.6(GLI3):c.3885C>T (p.Phe1295=) rs2484368162
NM_000168.6(GLI3):c.4122G>A (p.Pro1374=) rs763631985
NM_000168.6(GLI3):c.4659C>T (p.Ser1553=)
NM_000168.6(GLI3):c.4677C>A (p.Ile1559=) rs1360348103
NM_000168.6(GLI3):c.528C>G (p.Ile176Met) rs539622820

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