ClinVar Miner

List of variants in gene HLCS reported as benign by GeneDx

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 60
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HGVS dbSNP gnomAD frequency
NM_001352514.2(HLCS):c.331-6927G>A rs2845822 0.86978
NM_000411.8(HLCS):c.-393+9107C>T rs8130102 0.83233
NM_001352514.2(HLCS):c.1437+197G>A rs2835539 0.59935
NM_001352514.2(HLCS):c.1893-46G>T rs2073421 0.59296
NM_001352514.2(HLCS):c.195+79G>C rs1055700 0.59285
NM_001352514.2(HLCS):c.195+93G>A rs1055699 0.59269
NM_001352514.2(HLCS):c.2237-66T>G rs2845804 0.55285
NM_001352514.2(HLCS):c.1438-150C>T rs2282501 0.55245
NM_001352514.2(HLCS):c.1438-36G>A rs2073425 0.55169
NM_001352514.2(HLCS):c.331-8712G>C rs13047776 0.48187
NM_001352514.2(HLCS):c.331-8713A>C rs13048613 0.48187
NM_001352514.2(HLCS):c.2236+159C>T rs2073419 0.43086
NM_001352514.2(HLCS):c.2122-30G>A rs2073420 0.40931
NM_000411.8(HLCS):c.-393+9186_-393+9189dup rs71328533 0.37503
NM_001352514.2(HLCS):c.1892+301C>T rs1009778 0.35369
NM_001352514.2(HLCS):c.2450+287C>T rs9636905 0.30271
NM_001352514.2(HLCS):c.1961-124G>A rs2835454 0.12854
NM_001352514.2(HLCS):c.1275C>T (p.Ser425=) rs1065758 0.11920
NM_001352514.2(HLCS):c.*259T>C rs73398122 0.06633
NM_001352514.2(HLCS):c.2450+287_2450+288del rs58695786 0.06420
NM_001352514.2(HLCS):c.2236+180A>G rs2073418 0.06199
NM_001352514.2(HLCS):c.2450+275G>A rs186604557 0.05641
NM_001352514.2(HLCS):c.2450+271G>A rs371198062 0.05130
NM_001352514.2(HLCS):c.494-241A>G rs117383985 0.04290
NM_001352514.2(HLCS):c.727G>A (p.Val243Ile) rs61732502 0.04059
NM_001352514.2(HLCS):c.1620+90G>C rs73905407 0.03998
NM_001352514.2(HLCS):c.2450+113G>A rs58201045 0.03988
NM_001352514.2(HLCS):c.494-80A>G rs73904770 0.03960
NM_001352514.2(HLCS):c.567G>T (p.Glu189Asp) rs61732504 0.03941
NM_001352514.2(HLCS):c.1960+16T>A rs73398135 0.03462
NM_001352514.2(HLCS):c.331-9266G>A rs149650105 0.02721
NM_001352514.2(HLCS):c.2361C>T (p.Val787=) rs61732507 0.02015
NM_001352514.2(HLCS):c.1494C>T (p.Asn498=) rs1065759 0.01068
NM_000411.8(HLCS):c.-393+9391A>G rs112242941 0.00866
NM_001352514.2(HLCS):c.1412G>A (p.Arg471His) rs61732501 0.00850
NM_001352514.2(HLCS):c.494-13A>G rs76785742 0.00759
NM_001352514.2(HLCS):c.1969G>A (p.Gly657Arg) rs75867009 0.00642
NM_001352514.2(HLCS):c.726C>T (p.Pro242=) rs2230182 0.00587
NM_001352514.2(HLCS):c.331-7157C>T rs149104163 0.00524
NM_001352514.2(HLCS):c.2450+277G>A rs549306707 0.00454
NM_001352514.2(HLCS):c.1002C>T (p.Ala334=) rs116114362 0.00352
NM_001352514.2(HLCS):c.2113G>A (p.Glu705Lys) rs149736764 0.00315
NM_001352514.2(HLCS):c.2451-19C>T rs78671947 0.00290
NM_001352514.2(HLCS):c.*19C>T rs137949852 0.00259
NM_001352514.2(HLCS):c.1074G>A (p.Thr358=) rs116985497 0.00235
NM_001352514.2(HLCS):c.900G>A (p.Arg300=) rs146019354 0.00232
NM_001352514.2(HLCS):c.2121+11T>A rs371974889 0.00105
NM_001352514.2(HLCS):c.2615G>A (p.Arg872Gln) rs147474255 0.00018
NM_001352514.2(HLCS):c.2151C>T (p.Asn717=) rs148709879 0.00012
NM_001352514.2(HLCS):c.*7_*9del rs201681436
NM_001352514.2(HLCS):c.1620+7del rs140568778
NM_001352514.2(HLCS):c.1621-13_1621-10del rs377641674
NM_001352514.2(HLCS):c.1960+117A>T rs2835455
NM_001352514.2(HLCS):c.2121+59_2121+61del rs113222966
NM_001352514.2(HLCS):c.2450+136C>T rs9977769
NM_001352514.2(HLCS):c.2450+276T>C rs187818323
NM_001352514.2(HLCS):c.330+65_330+71dup rs58618927
NM_001352514.2(HLCS):c.330+65dup rs58618927
NM_001352514.2(HLCS):c.331-8454C>T rs3827190
NM_001352514.2(HLCS):c.331-9298del rs35458660

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