ClinVar Miner

List of variants in gene KCNT1 reported as benign by GeneDx

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Gene type:
ClinVar version:
Total variants: 169
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HGVS dbSNP gnomAD frequency
NM_020822.3(KCNT1):c.1769+16A>G rs10776844 0.72033
NM_020822.3(KCNT1):c.2243+178G>A rs12379077 0.68433
NM_020822.3(KCNT1):c.2427G>A (p.Thr809=) rs914428 0.64398
NM_020822.3(KCNT1):c.600+59A>C rs59909130 0.57178
NM_020822.3(KCNT1):c.2008+238A>G rs7856882 0.53015
NM_020822.3(KCNT1):c.2008+215G>A rs7870173 0.52644
NM_020822.3(KCNT1):c.1770-42G>A rs10858172 0.52428
NM_020822.3(KCNT1):c.600+60G>A rs56375931 0.51258
NM_020822.3(KCNT1):c.2008+115G>A rs7870035 0.50212
NM_020822.3(KCNT1):c.434+25C>A rs10122976 0.47340
NM_020822.3(KCNT1):c.1749G>A (p.Ala583=) rs17038714 0.29915
NM_020822.3(KCNT1):c.1510+206A>G rs56034547 0.28101
NM_020822.3(KCNT1):c.254+20T>C rs2385007 0.27844
NM_020822.3(KCNT1):c.2523-294C>A rs10776845 0.26560
NM_020822.3(KCNT1):c.760-139A>G rs10776842 0.25364
NM_020822.3(KCNT1):c.435-257G>C rs7019051 0.25193
NM_020822.3(KCNT1):c.435-67C>T rs12378616 0.24897
NM_020822.3(KCNT1):c.2944-43T>C rs776211997 0.23716
NM_020822.3(KCNT1):c.1036-39A>G rs41298365 0.23410
NM_020822.3(KCNT1):c.1337+29A>G rs10117578 0.23366
NM_020822.3(KCNT1):c.1036-94T>C rs55816769 0.23282
NM_020822.3(KCNT1):c.1200+12T>G rs58604946 0.23256
NM_020822.3(KCNT1):c.1036-233C>T rs56382410 0.23250
NM_020822.3(KCNT1):c.1036-207C>T rs56092954 0.23247
NM_020822.3(KCNT1):c.1337+81G>A rs10120407 0.23201
NM_020822.3(KCNT1):c.1200+130T>C rs59741818 0.22879
NM_020822.3(KCNT1):c.2944-35T>C rs1282374128 0.20729
NM_020822.3(KCNT1):c.2243+56G>A rs36100410 0.20457
NM_020822.3(KCNT1):c.600+45T>C rs867704288 0.20396
NM_020822.3(KCNT1):c.2842-69A>C rs10776848 0.20279
NM_020822.3(KCNT1):c.1338-219G>A rs62583551 0.20272
NM_020822.3(KCNT1):c.1510+96A>G rs11103179 0.20132
NM_020822.3(KCNT1):c.2944-31T>C rs1554779906 0.18287
NM_020822.3(KCNT1):c.255-164A>G rs11103161 0.18025
NM_020822.3(KCNT1):c.2944-27T>C rs1554779919 0.17746
NM_020822.3(KCNT1):c.1510+321C>T rs12683761 0.17402
NM_020822.3(KCNT1):c.3503-68T>C rs41299048 0.17316
NM_020822.3(KCNT1):c.1769+67T>G rs56157148 0.17272
NM_020822.3(KCNT1):c.2008+21G>A rs7869884 0.16982
NM_020822.3(KCNT1):c.2944-23T>C rs1371096342 0.16878
NM_020822.3(KCNT1):c.1036-206G>A rs11103174 0.16749
NM_020822.3(KCNT1):c.2243+277A>T rs34257069 0.16749
NM_020822.3(KCNT1):c.2009-222G>A rs56068722 0.16497
NM_020822.3(KCNT1):c.2842-80C>G rs10776847 0.16373
NM_020822.3(KCNT1):c.1401+29G>A rs35127932 0.16214
NM_020822.3(KCNT1):c.1036-170A>G rs55678700 0.16109
NM_020822.3(KCNT1):c.1337+121A>C rs62583545 0.16038
NM_020822.3(KCNT1):c.2729+31A>G rs113887396 0.15705
NM_020822.3(KCNT1):c.3587+63T>C rs41306389 0.14774
NM_020822.3(KCNT1):c.541-225C>T rs66469249 0.14174
NM_020822.3(KCNT1):c.111-263T>G rs11103145 0.13999
NM_020822.3(KCNT1):c.1510+265A>G rs56142950 0.13116
NM_020822.3(KCNT1):c.334+241T>C rs11103163 0.12763
NM_020822.3(KCNT1):c.334+231G>C rs11103162 0.12762
NM_020822.3(KCNT1):c.3587+71C>T rs41310949 0.12701
NM_020822.3(KCNT1):c.2944-19T>C rs759060806 0.12219
NM_020822.3(KCNT1):c.492-94A>G rs34140289 0.12108
NM_020822.3(KCNT1):c.255-294G>A rs11103160 0.12103
NM_020822.3(KCNT1):c.855-43A>G rs58690674 0.10517
NM_020822.3(KCNT1):c.2349+301G>A rs62584760 0.10310
NM_020822.3(KCNT1):c.1510+307T>C rs56187647 0.09690
NM_020822.3(KCNT1):c.1510+163_1510+202del rs1564368213 0.09493
NM_020822.3(KCNT1):c.600+50A>C rs1002410119 0.07501
NM_020822.3(KCNT1):c.1035+292C>T rs78852596 0.06689
NM_020822.3(KCNT1):c.2944-15T>C rs764828426 0.06643
NM_020822.3(KCNT1):c.600+41A>C rs778697899 0.06634
NM_020822.3(KCNT1):c.1510+163T>C rs11103180 0.05936
NM_020822.3(KCNT1):c.255-295C>T rs117005981 0.04514
NM_020822.3(KCNT1):c.2349+148A>G rs111494768 0.03687
NM_020822.3(KCNT1):c.2349+59T>C rs78752353 0.03686
NM_020822.3(KCNT1):c.2244-184G>A rs78888390 0.03685
NM_020822.3(KCNT1):c.2244-217T>C rs113226150 0.03685
NM_020822.3(KCNT1):c.2244-327C>T rs76916715 0.03680
NM_020822.3(KCNT1):c.2349+325_2349+326insA rs145386249 0.03667
NM_020822.3(KCNT1):c.2595-83C>G rs112557482 0.03537
NM_020822.3(KCNT1):c.2244-309T>C rs112366773 0.03117
NM_020822.3(KCNT1):c.540+39T>G rs76918958 0.02942
NM_020822.3(KCNT1):c.434+269G>A rs57969144 0.02914
NM_020822.3(KCNT1):c.2008+114T>C rs150112196 0.02796
NM_020822.3(KCNT1):c.2009-206G>A rs112152062 0.02771
NM_020822.3(KCNT1):c.1619+38C>T rs112428005 0.02687
NM_020822.3(KCNT1):c.978A>G (p.Pro326=) rs61739517 0.02678
NM_020822.3(KCNT1):c.1036-15G>A rs112341167 0.02567
NM_020822.3(KCNT1):c.2349+269C>T rs76125418 0.02254
NM_020822.3(KCNT1):c.2349+319C>A rs74694371 0.02158
NM_020822.3(KCNT1):c.2841+212G>A rs7024528 0.02125
NM_020822.3(KCNT1):c.2350-109A>G rs114229286 0.01790
NM_020822.3(KCNT1):c.1619+45G>A rs116237874 0.01777
NM_020822.3(KCNT1):c.*59G>T rs7854698 0.01713
NM_020822.3(KCNT1):c.2944-11T>C rs753324261 0.01620
NM_020822.3(KCNT1):c.1338-56G>A rs77818758 0.01599
NM_020822.3(KCNT1):c.1337+198T>C rs10118323 0.01511
NM_020822.3(KCNT1):c.3502+16G>A rs112116686 0.01447
NM_020822.3(KCNT1):c.2943+6C>T rs28612938 0.01429
NM_020822.3(KCNT1):c.3177+67A>T rs111386077 0.01391
NM_020822.3(KCNT1):c.492-117A>G rs140166868 0.01373
NM_020822.3(KCNT1):c.2210C>T (p.Thr737Met) rs61744696 0.01246
NM_020822.3(KCNT1):c.3388G>A (p.Ala1130Thr) rs138421850 0.00928
NM_020822.3(KCNT1):c.1056C>G (p.Leu352=) rs116691849 0.00907
NM_020822.3(KCNT1):c.2729+9A>G rs12005420 0.00858
NM_020822.3(KCNT1):c.3312G>A (p.Leu1104=) rs149416418 0.00671
NM_020822.3(KCNT1):c.3295C>T (p.Pro1099Ser) rs200642629 0.00491
NM_020822.3(KCNT1):c.59G>C (p.Gly20Ala) rs146292575 0.00472
NM_020822.3(KCNT1):c.30G>A (p.Pro10=) rs139034501 0.00419
NM_020822.3(KCNT1):c.116C>T (p.Pro39Leu) rs201051863 0.00399
NM_020822.3(KCNT1):c.2376C>T (p.Asp792=) rs149028586 0.00351
NM_020822.3(KCNT1):c.1533G>A (p.Glu511=) rs151080601 0.00325
NM_020822.3(KCNT1):c.99A>G (p.Gln33=) rs146152956 0.00323
NM_020822.3(KCNT1):c.333G>A (p.Ser111=) rs56008253 0.00273
NM_020822.3(KCNT1):c.2430C>T (p.Ala810=) rs139114208 0.00243
NM_020822.3(KCNT1):c.2235C>T (p.Ser745=) rs146810749 0.00215
NM_020822.3(KCNT1):c.3690C>T (p.Arg1230=) rs141521745 0.00185
NM_020822.3(KCNT1):c.2729G>A (p.Arg910Gln) rs151272083 0.00162
NM_020822.3(KCNT1):c.2892C>T (p.Phe964=) rs146904895 0.00143
NM_020822.3(KCNT1):c.3390G>A (p.Ala1130=) rs77912754 0.00140
NM_020822.3(KCNT1):c.435-17G>A rs140115987 0.00140
NM_020822.3(KCNT1):c.3256G>A (p.Gly1086Arg) rs201156458 0.00122
NM_020822.3(KCNT1):c.2142G>A (p.Leu714=) rs370580872 0.00098
NM_020822.3(KCNT1):c.2350-8G>A rs371678685 0.00096
NM_020822.3(KCNT1):c.985C>T (p.Leu329=) rs147165522 0.00093
NM_020822.3(KCNT1):c.1879A>G (p.Ile627Val) rs143355299 0.00090
NM_020822.3(KCNT1):c.2034C>T (p.Gly678=) rs369983077 0.00088
NM_020822.3(KCNT1):c.2994G>A (p.Leu998=) rs143198263 0.00087
NM_020822.3(KCNT1):c.601-13C>G rs202113794 0.00068
NM_020822.3(KCNT1):c.3685A>G (p.Thr1229Ala) rs74533482 0.00057
NM_020822.3(KCNT1):c.2619C>T (p.Gly873=) rs144659358 0.00055
NM_020822.3(KCNT1):c.1726G>A (p.Glu576Lys) rs147306623 0.00048
NM_020822.3(KCNT1):c.2070C>T (p.Gly690=) rs370155559 0.00041
NM_020822.3(KCNT1):c.-1C>A rs149383208 0.00039
NM_020822.3(KCNT1):c.1258C>T (p.Leu420=) rs199996353 0.00032
NM_020822.3(KCNT1):c.1628A>G (p.Gln543Arg) rs200173000 0.00032
NM_020822.3(KCNT1):c.1338-3C>T rs369562243 0.00031
NM_020822.3(KCNT1):c.3694G>A (p.Glu1232Lys) rs138109494 0.00023
NM_020822.3(KCNT1):c.1008C>T (p.Cys336=) rs540422455 0.00021
NM_020822.3(KCNT1):c.3058C>T (p.Arg1020Cys) rs747605326 0.00014
NM_020822.3(KCNT1):c.3689G>A (p.Arg1230His) rs776538404 0.00007
NM_020822.3(KCNT1):c.3437G>A (p.Arg1146His) rs368339692 0.00005
NM_020822.3(KCNT1):c.3045C>T (p.Gly1015=) rs576099213 0.00003
NM_020822.3(KCNT1):c.110+57dup rs5901089
NM_020822.3(KCNT1):c.1200+177_1200+196del rs60237528
NM_020822.3(KCNT1):c.1337+310_1337+323del rs34698704
NM_020822.3(KCNT1):c.1338-187CCCGCCTTCCATCCTC[3] rs539267974
NM_020822.3(KCNT1):c.1402-64C>T rs57788375
NM_020822.3(KCNT1):c.1510+183_1510+222del rs1564368224
NM_020822.3(KCNT1):c.1510+206_1510+245del rs778034391
NM_020822.3(KCNT1):c.1769+172G>T rs10735240
NM_020822.3(KCNT1):c.2349+326G>T rs530593370
NM_020822.3(KCNT1):c.2349+7C>T rs190849453
NM_020822.3(KCNT1):c.254+18_254+19dup rs141291153
NM_020822.3(KCNT1):c.2730-164_2730-98del rs1564383338
NM_020822.3(KCNT1):c.2841+109G>T rs880929
NM_020822.3(KCNT1):c.2841+309G>A rs189013619
NM_020822.3(KCNT1):c.2944-17_2944-6del rs2131574070
NM_020822.3(KCNT1):c.2944-39T>C rs1446961512
NM_020822.3(KCNT1):c.2944-52CTCC[4] rs55843930
NM_020822.3(KCNT1):c.2944-52CTCC[6] rs55843930
NM_020822.3(KCNT1):c.2944-52CTCC[7] rs55843930
NM_020822.3(KCNT1):c.3178-26GCCCT[3] rs757968008
NM_020822.3(KCNT1):c.3178-26GCCCT[5] rs757968008
NM_020822.3(KCNT1):c.334+153G>A rs58063887
NM_020822.3(KCNT1):c.3587+36dup rs11430171
NM_020822.3(KCNT1):c.492-86C>T rs4842032
NM_020822.3(KCNT1):c.600+11G>A rs375220600
NM_020822.3(KCNT1):c.600+51C>G rs13286338
NM_020822.3(KCNT1):c.600+51_600+59del rs141511626
NM_020822.3(KCNT1):c.600+71dup rs879903723
NM_020822.3(KCNT1):c.711C>G (p.Pro237=) rs117286274
NM_020822.3(KCNT1):c.760-110_760-109insACAGGTGTGGCCAGGTGCAGGCTGCCCCATGGGCCTCAGCCGAGACACAGGTGTGGCCAGGTGTAGGCTGCCCCGTGGGCCTCAGCCGAGAC rs1564353885
NM_020822.3(KCNT1):c.855-280del rs35933412

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