ClinVar Miner

List of variants in gene LAMP2 reported as likely benign

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 262
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HGVS dbSNP gnomAD frequency
NM_002294.3(LAMP2):c.*4579A>G rs42885 0.62750
NM_002294.3(LAMP2):c.156A>T (p.Val52=) rs12097 0.39324
NM_002294.3(LAMP2):c.*5038A>G rs2748 0.28585
NM_002294.3(LAMP2):c.*1314T>C rs5957381 0.09876
NM_002294.3(LAMP2):c.*297A>C rs8160 0.09815
NM_002294.3(LAMP2):c.*3248G>A rs5957380 0.09812
NM_002294.3(LAMP2):c.*4671C>T rs1045953 0.09801
NM_002294.3(LAMP2):c.*486A>G rs5957383 0.09784
NM_002294.3(LAMP2):c.*2395A>G rs10127185 0.09686
NM_002294.3(LAMP2):c.*2261A>G rs12395643 0.09416
NM_002294.3(LAMP2):c.*2460A>G rs10127182 0.08629
NM_002294.3(LAMP2):c.*2195T>C rs13441024 0.08473
NM_002294.3(LAMP2):c.*1096T>C rs5957382 0.06824
NM_002294.3(LAMP2):c.*1071G>T rs2285548 0.03391
NM_002294.3(LAMP2):c.*1589A>G rs73612906 0.03180
NM_002294.3(LAMP2):c.927C>T (p.Ser309=) rs73219144 0.02702
NM_002294.3(LAMP2):c.*205C>T rs41300191 0.02502
NM_002294.3(LAMP2):c.*4562A>G rs142200759 0.01528
NM_002294.3(LAMP2):c.*1617C>T rs141881232 0.01521
NM_002294.3(LAMP2):c.*2746A>G rs3827478 0.01396
NM_002294.3(LAMP2):c.1094-140A>G rs141348126 0.01356
NM_002294.3(LAMP2):c.929-126G>A rs7888393 0.01266
NM_002294.3(LAMP2):c.*3249T>C rs41300908 0.01188
NM_002294.3(LAMP2):c.865-242C>A rs146283621 0.01021
NM_002294.3(LAMP2):c.741+224C>T rs181256167 0.01012
NM_002294.3(LAMP2):c.*2162G>A rs767123866 0.00966
NM_002294.3(LAMP2):c.1094-322G>A rs57800983 0.00828
NM_002294.3(LAMP2):c.*5048A>T rs113285013 0.00807
NM_002294.3(LAMP2):c.*3459G>T rs185990694 0.00648
NM_002294.3(LAMP2):c.*237C>T rs143070918 0.00627
NM_002294.3(LAMP2):c.929-292G>A rs185059445 0.00492
NM_002294.3(LAMP2):c.865-310C>T rs181144328 0.00480
NM_002294.3(LAMP2):c.*1984G>A rs148513908 0.00454
NM_002294.3(LAMP2):c.1093+2514G>A rs144140265 0.00404
NM_002294.3(LAMP2):c.65-58T>A rs192733755 0.00307
NM_002294.3(LAMP2):c.661G>A (p.Gly221Arg) rs145169006 0.00193
NM_002294.3(LAMP2):c.755T>G (p.Ile252Ser) rs141541387 0.00119
NM_002294.3(LAMP2):c.864+83G>A rs768677322 0.00113
NM_002294.3(LAMP2):c.*4963del rs754879365 0.00097
NM_002294.3(LAMP2):c.*853G>A rs763861761 0.00088
NM_002294.3(LAMP2):c.*1413A>G rs773379092 0.00076
NM_002294.3(LAMP2):c.339C>T (p.Ser113=) rs147369153 0.00066
NM_002294.3(LAMP2):c.385G>A (p.Ala129Thr) rs149276836 0.00045
NM_002294.3(LAMP2):c.*15T>C rs376806600 0.00042
NM_002294.3(LAMP2):c.*4757A>G rs767652057 0.00040
NM_002294.3(LAMP2):c.*4961A>G rs765371462 0.00039
NM_002294.3(LAMP2):c.586A>T (p.Thr196Ser) rs138991195 0.00039
NM_002294.3(LAMP2):c.-10C>T rs201209341 0.00028
NM_002294.3(LAMP2):c.1142T>C (p.Val381Ala) rs139633545 0.00026
NM_002294.3(LAMP2):c.741+11C>T rs149155417 0.00024
NM_002294.3(LAMP2):c.1093+2450G>A rs149783672 0.00015
NM_002294.3(LAMP2):c.1093+2478A>G rs140936359 0.00014
NM_002294.3(LAMP2):c.591G>A (p.Val197=) rs201030806 0.00014
NM_002294.3(LAMP2):c.1093+2485T>C rs1301008847 0.00012
NM_002294.3(LAMP2):c.1093+2544A>G rs777128122 0.00009
NM_002294.3(LAMP2):c.157C>T (p.Arg53Cys) rs752321157 0.00009
NM_002294.3(LAMP2):c.42C>T (p.Leu14=) rs727503122 0.00009
NM_002294.3(LAMP2):c.*2794T>C rs368937075 0.00008
NM_002294.3(LAMP2):c.*2678G>A rs775547188 0.00006
NM_002294.3(LAMP2):c.1094-4C>T rs768756537 0.00006
NM_002294.3(LAMP2):c.264A>T (p.Ile88=) rs779524035 0.00005
NM_002294.3(LAMP2):c.32G>T (p.Gly11Val) rs3180515 0.00005
NM_002294.3(LAMP2):c.771T>C (p.Asn257=) rs138435481 0.00005
NM_002294.3(LAMP2):c.*2771A>G rs747304113 0.00004
NM_002294.3(LAMP2):c.-7C>T rs762305947 0.00004
NM_002294.3(LAMP2):c.1091C>T (p.Thr364Ile) rs183781327 0.00004
NM_002294.3(LAMP2):c.1093+2589C>T rs377303143 0.00004
NM_002294.3(LAMP2):c.1093+9C>T rs371259269 0.00004
NM_002294.3(LAMP2):c.1137A>G (p.Ile379Met) rs730880126 0.00004
NM_002294.3(LAMP2):c.299C>T (p.Ala100Val) rs397516741 0.00004
NM_002294.3(LAMP2):c.517G>A (p.Val173Ile) rs141574558 0.00004
NM_002294.3(LAMP2):c.65-13T>A rs727503121 0.00004
NM_002294.3(LAMP2):c.929-5T>C rs375341409 0.00004
NM_002294.3(LAMP2):c.1000G>C (p.Glu334Gln) rs766962315 0.00003
NM_002294.3(LAMP2):c.1083G>A (p.Lys361=) rs1334549485 0.00003
NM_002294.3(LAMP2):c.204C>G (p.Asp68Glu) rs376215728 0.00003
NM_002294.3(LAMP2):c.276C>T (p.Phe92=) rs754577706 0.00003
NM_002294.3(LAMP2):c.300G>A (p.Ala100=) rs765548221 0.00003
NM_002294.3(LAMP2):c.398-3T>C rs1045629648 0.00003
NM_002294.3(LAMP2):c.472A>G (p.Thr158Ala) rs138374063 0.00003
NM_002294.3(LAMP2):c.519A>G (p.Val173=) rs1060504543 0.00003
NM_002294.3(LAMP2):c.601A>G (p.Ile201Val) rs1362738445 0.00003
NM_002294.3(LAMP2):c.64+20C>G rs1346805727 0.00003
NM_002294.3(LAMP2):c.640C>A (p.Pro214Thr) rs776101722 0.00003
NM_002294.3(LAMP2):c.65-20A>T rs773064698 0.00003
NM_002294.3(LAMP2):c.750A>C (p.Ser250=) rs765836082 0.00003
NM_002294.3(LAMP2):c.929-29A>G rs773549757 0.00003
NM_002294.3(LAMP2):c.1094-10C>T rs1278507301 0.00002
NM_002294.3(LAMP2):c.1116C>T (p.Asp372=) rs749338632 0.00002
NM_002294.3(LAMP2):c.184-19A>G rs1255756648 0.00002
NM_002294.3(LAMP2):c.232A>G (p.Ile78Val) rs748676358 0.00002
NM_002294.3(LAMP2):c.277G>A (p.Gly93Arg) rs727504953 0.00002
NM_002294.3(LAMP2):c.340G>A (p.Val114Ile) rs377652722 0.00002
NM_002294.3(LAMP2):c.453T>C (p.Phe151=) rs200348335 0.00002
NM_002294.3(LAMP2):c.778C>T (p.His260Tyr) rs778577575 0.00002
NM_002294.3(LAMP2):c.797G>A (p.Arg266His) rs200934351 0.00002
NM_002294.3(LAMP2):c.929-9T>C rs978513368 0.00002
NM_002294.3(LAMP2):c.960C>T (p.Tyr320=) rs371959861 0.00002
NM_002294.3(LAMP2):c.*2755G>C rs1274595954 0.00001
NM_002294.3(LAMP2):c.*2773A>C rs397516587 0.00001
NM_002294.3(LAMP2):c.-38G>C rs1354020682 0.00001
NM_002294.3(LAMP2):c.1068T>C (p.Asn356=) rs769643748 0.00001
NM_002294.3(LAMP2):c.1080A>G (p.Gly360=) rs1476303419 0.00001
NM_002294.3(LAMP2):c.1139C>T (p.Ala380Val) rs747301460 0.00001
NM_002294.3(LAMP2):c.1140G>A (p.Ala380=) rs1029569080 0.00001
NM_002294.3(LAMP2):c.1191T>C (p.Phe397=) rs752231323 0.00001
NM_002294.3(LAMP2):c.183+9A>G rs753577843 0.00001
NM_002294.3(LAMP2):c.209G>T (p.Gly70Val) rs1340367353 0.00001
NM_002294.3(LAMP2):c.30G>A (p.Pro10=) rs11540224 0.00001
NM_002294.3(LAMP2):c.397+8T>A rs1257675921 0.00001
NM_002294.3(LAMP2):c.398-5T>C rs1460188868 0.00001
NM_002294.3(LAMP2):c.415G>A (p.Glu139Lys) rs373007615 0.00001
NM_002294.3(LAMP2):c.461A>G (p.Asn154Ser) rs773525538 0.00001
NM_002294.3(LAMP2):c.462T>C (p.Asn154=) rs772164739 0.00001
NM_002294.3(LAMP2):c.556+13T>A rs1380200946 0.00001
NM_002294.3(LAMP2):c.556+17T>G rs1056255642 0.00001
NM_002294.3(LAMP2):c.556+20C>G rs1253220845 0.00001
NM_002294.3(LAMP2):c.605A>C (p.His202Pro) rs730880475 0.00001
NM_002294.3(LAMP2):c.64+16C>G rs780307352 0.00001
NM_002294.3(LAMP2):c.657A>G (p.Glu219=) rs876657484 0.00001
NM_002294.3(LAMP2):c.741+10T>C rs1339351790 0.00001
NM_002294.3(LAMP2):c.768C>T (p.Pro256=) rs772901542 0.00001
NM_002294.3(LAMP2):c.813A>G (p.Leu271=) rs876657485 0.00001
NM_002294.3(LAMP2):c.865-9T>C rs1057522838 0.00001
NM_002294.3(LAMP2):c.885T>C (p.Tyr295=) rs771546093 0.00001
NM_002294.3(LAMP2):c.959A>G (p.Tyr320Cys) rs1292531971 0.00001
NM_002294.3(LAMP2):c.972C>G (p.Pro324=) rs1229203142 0.00001
NM_001122606.1(LAMP2):c.1094-549AT[11] rs753399289
NM_002294.3(LAMP2):c.*1243A>G rs147825361
NM_002294.3(LAMP2):c.*1673G>T
NM_002294.3(LAMP2):c.*1701dup rs373005118
NM_002294.3(LAMP2):c.*2136GT[7] rs1556075606
NM_002294.3(LAMP2):c.*2147_*2148insGTATAT rs778330920
NM_002294.3(LAMP2):c.*2148AT[9] rs753399289
NM_002294.3(LAMP2):c.*2213TATATATACACA[1] rs200167553
NM_002294.3(LAMP2):c.*3031dup rs113549733
NM_002294.3(LAMP2):c.*3347GTTA[1] rs764018077
NM_002294.3(LAMP2):c.*3459GTT[3] rs199705754
NM_002294.3(LAMP2):c.-23_-16del rs1556124290
NM_002294.3(LAMP2):c.-32GTCGCCGCC[1] rs193922648
NM_002294.3(LAMP2):c.-32GTCGCCGCC[3] rs193922648
NM_002294.3(LAMP2):c.-4G>C rs200297370
NM_002294.3(LAMP2):c.-8G>C
NM_002294.3(LAMP2):c.1002G>A (p.Glu334=)
NM_002294.3(LAMP2):c.1089T>C (p.Ser363=)
NM_002294.3(LAMP2):c.1093+10A>G
NM_002294.3(LAMP2):c.1093+11A>G
NM_002294.3(LAMP2):c.1093+14A>T rs2147278803
NM_002294.3(LAMP2):c.1093+17C>T rs1057521759
NM_002294.3(LAMP2):c.1093+2469C>A rs770877964
NM_002294.3(LAMP2):c.1093+2524T>C rs1602530731
NM_002294.3(LAMP2):c.1093+7A>G
NM_002294.3(LAMP2):c.1093+9C>G rs371259269
NM_002294.3(LAMP2):c.1094-19G>A
NM_002294.3(LAMP2):c.1094-19G>T rs1353282320
NM_002294.3(LAMP2):c.1094-9C>T rs2147273257
NM_002294.3(LAMP2):c.1095T>C (p.Ala365=)
NM_002294.3(LAMP2):c.1114GAC[1] (p.Asp373del) rs730880494
NM_002294.3(LAMP2):c.1134C>T (p.Pro378=) rs2147273218
NM_002294.3(LAMP2):c.1140G>T (p.Ala380=) rs1029569080
NM_002294.3(LAMP2):c.1143G>A (p.Val381=) rs2147273199
NM_002294.3(LAMP2):c.1152C>T (p.Ala384=) rs2147273194
NM_002294.3(LAMP2):c.120T>C (p.Thr40=)
NM_002294.3(LAMP2):c.1224G>A (p.Glu408=)
NM_002294.3(LAMP2):c.1227A>G (p.Gln409=)
NM_002294.3(LAMP2):c.12C>T (p.Phe4=)
NM_002294.3(LAMP2):c.141G>A (p.Gln47=)
NM_002294.3(LAMP2):c.150C>T (p.Phe50=) rs1057521701
NM_002294.3(LAMP2):c.156_157delinsTT (p.Arg53Cys) rs1556114013
NM_002294.3(LAMP2):c.183+17A>G rs1052902953
NM_002294.3(LAMP2):c.183+8T>C rs997912625
NM_002294.3(LAMP2):c.184-11A>G rs2147286997
NM_002294.3(LAMP2):c.184-9T>G rs774218764
NM_002294.3(LAMP2):c.204C>T (p.Asp68=) rs376215728
NM_002294.3(LAMP2):c.207T>C (p.His69=)
NM_002294.3(LAMP2):c.212C>G (p.Thr71Ser)
NM_002294.3(LAMP2):c.219A>G (p.Thr73=) rs1921054102
NM_002294.3(LAMP2):c.261A>G (p.Lys87=)
NM_002294.3(LAMP2):c.300G>C (p.Ala100=) rs765548221
NM_002294.3(LAMP2):c.300G>T (p.Ala100=) rs765548221
NM_002294.3(LAMP2):c.30G>C (p.Pro10=)
NM_002294.3(LAMP2):c.327T>C (p.Tyr109=) rs1397410765
NM_002294.3(LAMP2):c.333T>C (p.Ile111=) rs397516742
NM_002294.3(LAMP2):c.354C>T (p.Tyr118=) rs1602539967
NM_002294.3(LAMP2):c.370ACA[1] (p.Thr125del) rs760602347
NM_002294.3(LAMP2):c.372A>G (p.Thr124=)
NM_002294.3(LAMP2):c.387T>C (p.Ala129=)
NM_002294.3(LAMP2):c.393T>C (p.Asp131=)
NM_002294.3(LAMP2):c.397+16del
NM_002294.3(LAMP2):c.397+19T>C
NM_002294.3(LAMP2):c.398-14A>G
NM_002294.3(LAMP2):c.398-4A>G rs1057523043
NM_002294.3(LAMP2):c.398-7T>C rs876657483
NM_002294.3(LAMP2):c.426C>T (p.Ala142=) rs2147283103
NM_002294.3(LAMP2):c.429C>T (p.Ile143=) rs1602536478
NM_002294.3(LAMP2):c.42C>G (p.Leu14=) rs727503122
NM_002294.3(LAMP2):c.449T>A (p.Leu150His)
NM_002294.3(LAMP2):c.450T>C (p.Leu150=) rs2147283088
NM_002294.3(LAMP2):c.45T>A (p.Val15=)
NM_002294.3(LAMP2):c.45T>G (p.Val15=)
NM_002294.3(LAMP2):c.465T>C (p.Ser155=)
NM_002294.3(LAMP2):c.46C>T (p.Leu16=)
NM_002294.3(LAMP2):c.533A>G (p.Gln178Arg) rs775432228
NM_002294.3(LAMP2):c.546G>T (p.Val182=) rs2147282968
NM_002294.3(LAMP2):c.556+10G>A
NM_002294.3(LAMP2):c.557-10C>G
NM_002294.3(LAMP2):c.557-11G>A
NM_002294.3(LAMP2):c.557-128dup rs775935754
NM_002294.3(LAMP2):c.557-20T>A rs2147282562
NM_002294.3(LAMP2):c.557-251G>T rs148242561
NM_002294.3(LAMP2):c.562C>T (p.Leu188=)
NM_002294.3(LAMP2):c.576C>T (p.Asp192=) rs1569369724
NM_002294.3(LAMP2):c.579A>G (p.Lys193=)
NM_002294.3(LAMP2):c.582T>C (p.Thr194=) rs1602535931
NM_002294.3(LAMP2):c.600C>T (p.Thr200=) rs2147282502
NM_002294.3(LAMP2):c.609C>A (p.Thr203=) rs1602535881
NM_002294.3(LAMP2):c.636T>C (p.Pro212=)
NM_002294.3(LAMP2):c.64+15C>A
NM_002294.3(LAMP2):c.64+20C>T
NM_002294.3(LAMP2):c.65-20_65-18del
NM_002294.3(LAMP2):c.65-3C>T rs769801659
NM_002294.3(LAMP2):c.65-6A>T
NM_002294.3(LAMP2):c.672A>G (p.Ser224=) rs397516746
NM_002294.3(LAMP2):c.697C>T (p.Leu233=)
NM_002294.3(LAMP2):c.6G>A (p.Val2=) rs2147294923
NM_002294.3(LAMP2):c.741+10_741+11insTT
NM_002294.3(LAMP2):c.741+13A>G
NM_002294.3(LAMP2):c.741+7G>T rs2147282351
NM_002294.3(LAMP2):c.742-11T>C
NM_002294.3(LAMP2):c.742-16TCT[2] rs730880476
NM_002294.3(LAMP2):c.742-7_742-5del rs779710402
NM_002294.3(LAMP2):c.742-8T>C
NM_002294.3(LAMP2):c.747T>C (p.Ala249=)
NM_002294.3(LAMP2):c.786A>G (p.Thr262=)
NM_002294.3(LAMP2):c.807T>C (p.Thr269=) rs1211870519
NM_002294.3(LAMP2):c.855C>T (p.Val285=) rs397516750
NM_002294.3(LAMP2):c.864+18T>C rs2147281341
NM_002294.3(LAMP2):c.864+7A>G
NM_002294.3(LAMP2):c.864+8A>T rs923254412
NM_002294.3(LAMP2):c.865-12dup rs746330494
NM_002294.3(LAMP2):c.865-13C>T rs760238519
NM_002294.3(LAMP2):c.865-18A>T
NM_002294.3(LAMP2):c.865-311G>T rs185635351
NM_002294.3(LAMP2):c.865-4del rs781417368
NM_002294.3(LAMP2):c.865-8T>C rs2147279553
NM_002294.3(LAMP2):c.865-8del rs746330494
NM_002294.3(LAMP2):c.876C>T (p.Asn292=)
NM_002294.3(LAMP2):c.877C>A (p.Arg293=) rs727503118
NM_002294.3(LAMP2):c.907A>G (p.Met303Val) rs768369360
NM_002294.3(LAMP2):c.907A>T (p.Met303Leu)
NM_002294.3(LAMP2):c.90A>G (p.Glu30=) rs1602540965
NM_002294.3(LAMP2):c.928+11C>T
NM_002294.3(LAMP2):c.928+18C>T
NM_002294.3(LAMP2):c.928+8A>T
NM_002294.3(LAMP2):c.929-12T>C rs2147278991
NM_002294.3(LAMP2):c.929-13C>G
NM_002294.3(LAMP2):c.929-4G>C
NM_002294.3(LAMP2):c.929-9del rs1338648665
NM_002294.3(LAMP2):c.966T>C (p.Asp322=) rs2147278937
NM_002294.3(LAMP2):c.969C>A (p.Ala323=) rs1602532246
NM_002294.3(LAMP2):c.987T>C (p.Tyr329=)
NM_002294.3(LAMP2):c.9C>T (p.Cys3=)

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