ClinVar Miner

List of variants in gene LYST reported as likely benign for not provided

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 109
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HGVS dbSNP gnomAD frequency
NM_000081.4(LYST):c.5923-19G>T rs141197189 0.03063
NM_000081.4(LYST):c.7137A>C (p.Leu2379=) rs61738992 0.02884
NM_000081.4(LYST):c.193-270A>G rs12118012 0.02569
NM_000081.4(LYST):c.7627+177T>C rs10802994 0.02074
NM_000081.4(LYST):c.10374+33A>G rs17615059 0.02070
NM_000081.4(LYST):c.5784+243G>A rs12130859 0.01976
NM_000081.4(LYST):c.7060-280C>T rs115968700 0.01262
NM_000081.4(LYST):c.9044+232T>C rs2208383 0.01234
NM_000081.4(LYST):c.9C>T (p.Thr3=) rs33998267 0.01172
NM_000081.4(LYST):c.-7-16A>G rs114673990 0.00955
NM_000081.4(LYST):c.5023+142G>A rs7541506 0.00953
NM_000081.4(LYST):c.2363+124A>C rs113699500 0.00885
NM_000081.4(LYST):c.10701+217T>C rs377245179 0.00708
NM_000081.4(LYST):c.7972+293C>G rs78598087 0.00621
NM_000081.4(LYST):c.10941-7C>A rs72761794 0.00614
NM_000081.4(LYST):c.5518T>G (p.Ser1840Ala) rs115330112 0.00485
NM_000081.4(LYST):c.-5C>T rs141317482 0.00475
NM_000081.4(LYST):c.9163-38C>T rs201693038 0.00470
NM_000081.4(LYST):c.10800+4G>T rs41308172 0.00441
NM_000081.4(LYST):c.6482A>C (p.Glu2161Ala) rs147756847 0.00416
NM_000081.4(LYST):c.1686G>C (p.Gln562His) rs77091385 0.00394
NM_000081.4(LYST):c.4863-19T>C rs150288597 0.00393
NM_000081.4(LYST):c.5291G>C (p.Gly1764Ala) rs35413645 0.00350
NM_000081.4(LYST):c.6292G>A (p.Ala2098Thr) rs146091043 0.00315
NM_000081.4(LYST):c.7870C>T (p.Arg2624Trp) rs150306354 0.00280
NM_000081.4(LYST):c.5223T>C (p.Leu1741=) rs7530527 0.00277
NM_000081.4(LYST):c.8913T>G (p.Asn2971Lys) rs34702903 0.00276
NM_000081.4(LYST):c.2363+4T>C rs201398337 0.00252
NM_000081.4(LYST):c.597C>G (p.Asp199Glu) rs112127610 0.00238
NM_000081.4(LYST):c.3683A>G (p.Asn1228Ser) rs145553827 0.00171
NM_000081.4(LYST):c.6710A>C (p.Gln2237Pro) rs138443479 0.00148
NM_000081.4(LYST):c.8487C>T (p.Ile2829=) rs144597913 0.00126
NM_000081.4(LYST):c.4548C>T (p.Ser1516=) rs116551057 0.00108
NM_000081.4(LYST):c.7506A>G (p.Gln2502=) rs140434436 0.00106
NM_000081.4(LYST):c.6588A>G (p.Gly2196=) rs34423788 0.00093
NM_000081.4(LYST):c.2769A>C (p.Ser923=) rs112739986 0.00086
NM_000081.4(LYST):c.3507C>T (p.Leu1169=) rs74861744 0.00083
NM_000081.4(LYST):c.11086G>A (p.Val3696Ile) rs147221131 0.00052
NM_000081.4(LYST):c.8806G>A (p.Val2936Ile) rs2753327 0.00052
NM_000081.4(LYST):c.9017A>G (p.Lys3006Arg) rs140934482 0.00047
NM_000081.4(LYST):c.143A>G (p.His48Arg) rs200132460 0.00046
NM_000081.4(LYST):c.1655T>C (p.Val552Ala) rs199617821 0.00038
NM_000081.4(LYST):c.2946T>C (p.Tyr982=) rs145892183 0.00034
NM_000081.4(LYST):c.2313G>A (p.Gln771=) rs147220685 0.00031
NM_000081.4(LYST):c.6782G>A (p.Arg2261His) rs147791378 0.00031
NM_000081.4(LYST):c.8268C>T (p.His2756=) rs141534829 0.00029
NM_000081.4(LYST):c.6487G>A (p.Ala2163Thr) rs201513511 0.00026
NM_000081.4(LYST):c.2754G>A (p.Glu918=) rs373577384 0.00022
NM_000081.4(LYST):c.3898A>G (p.Ile1300Val) rs199855658 0.00021
NM_000081.4(LYST):c.4006+8G>A rs369153654 0.00021
NM_000081.4(LYST):c.6291C>T (p.Ala2097=) rs199857997 0.00016
NM_000081.4(LYST):c.7806A>G (p.Gln2602=) rs372754364 0.00014
NM_000081.4(LYST):c.6432A>G (p.Ser2144=) rs145080654 0.00011
NM_000081.4(LYST):c.281C>T (p.Thr94Ile) rs777389303 0.00009
NM_000081.4(LYST):c.7627+6A>T rs749282192 0.00008
NM_000081.4(LYST):c.3030A>G (p.Gly1010=) rs751511204 0.00006
NM_000081.4(LYST):c.6258G>A (p.Glu2086=) rs771882274 0.00006
NM_000081.4(LYST):c.3876A>G (p.Val1292=) rs144664809 0.00004
NM_000081.4(LYST):c.4705A>C (p.Asn1569His) rs767687843 0.00004
NM_000081.4(LYST):c.5061T>C (p.Tyr1687=) rs80338658 0.00004
NM_000081.4(LYST):c.8607A>G (p.Gln2869=) rs369484787 0.00004
NM_000081.4(LYST):c.9804A>G (p.Pro3268=) rs368740409 0.00004
NM_000081.4(LYST):c.1500G>A (p.Arg500=) rs758029213 0.00003
NM_000081.4(LYST):c.3177T>C (p.Ala1059=) rs371576746 0.00003
NM_000081.4(LYST):c.411A>T (p.Val137=) rs1477144361 0.00003
NM_000081.4(LYST):c.2757G>A (p.Ser919=) rs753541871 0.00002
NM_000081.4(LYST):c.3354A>G (p.Arg1118=) rs777471673 0.00002
NM_000081.4(LYST):c.9834T>C (p.Thr3278=) rs901343967 0.00002
NM_000081.4(LYST):c.11085C>T (p.Leu3695=) rs767062870 0.00001
NM_000081.4(LYST):c.4410A>G (p.Ser1470=) rs756271070 0.00001
NM_000081.4(LYST):c.463G>C (p.Val155Leu) rs769942827 0.00001
NM_000081.4(LYST):c.5037T>C (p.Gly1679=) rs753293453 0.00001
NM_000081.4(LYST):c.6216A>G (p.Val2072=) rs371248013 0.00001
NM_000081.4(LYST):c.9045-4A>G rs769310836 0.00001
NM_000081.4(LYST):c.*1295T>C
NM_000081.4(LYST):c.*891G>C
NM_000081.4(LYST):c.-7-28dup rs766869010
NM_000081.4(LYST):c.10701+227A>C rs145373322
NM_000081.4(LYST):c.10893G>A (p.Leu3631=) rs774779449
NM_000081.4(LYST):c.11073G>A (p.Val3691=) rs1190356628
NM_000081.4(LYST):c.11268-5del rs36014994
NM_000081.4(LYST):c.11268-6_11268-5del rs36014994
NM_000081.4(LYST):c.11355C>G (p.Arg3785=)
NM_000081.4(LYST):c.1836G>A (p.Leu612=)
NM_000081.4(LYST):c.1995A>G (p.Ser665=)
NM_000081.4(LYST):c.244C>T (p.Leu82=)
NM_000081.4(LYST):c.3543T>C (p.Ala1181=) rs1572319794
NM_000081.4(LYST):c.3756C>T (p.Ser1252=) rs1572302740
NM_000081.4(LYST):c.4198C>T (p.Leu1400=) rs1572271121
NM_000081.4(LYST):c.42C>T (p.Thr14=)
NM_000081.4(LYST):c.4339C>T (p.Leu1447=) rs1572270477
NM_000081.4(LYST):c.4479A>G (p.Lys1493=) rs1572269872
NM_000081.4(LYST):c.4893T>C (p.Leu1631=)
NM_000081.4(LYST):c.5461-13_5461-12dup rs557545474
NM_000081.4(LYST):c.5461-3dup rs557545474
NM_000081.4(LYST):c.5922+10A>G rs375422713
NM_000081.4(LYST):c.6411T>C (p.Asp2137=) rs1572171486
NM_000081.4(LYST):c.6570C>T (p.Val2190=) rs1572170906
NM_000081.4(LYST):c.6898T>C (p.Leu2300=)
NM_000081.4(LYST):c.7229+50CTTTT[10] rs71174459
NM_000081.4(LYST):c.7323C>T (p.Asn2441=) rs1572152125
NM_000081.4(LYST):c.8229G>A (p.Gln2743=) rs1572118809
NM_000081.4(LYST):c.8358+7A>T rs752173624
NM_000081.4(LYST):c.9044+234CA[21] rs4006790
NM_000081.4(LYST):c.9044+234CA[22] rs4006790
NM_000081.4(LYST):c.9178T>C (p.Leu3060=) rs1572075946
NM_000081.4(LYST):c.9468C>T (p.Ser3156=) rs1663290633
NM_000081.4(LYST):c.9699T>C (p.Tyr3233=)
NM_000081.4(LYST):c.9785-21_9785-17del rs547173744

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