List of variants in gene LYST reported by Illumina Laboratory Services, Illumina

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
		ClinVar version:

Total variants: 240

Download table as spreadsheet

HGVS	dbSNP	gnomAD frequency
NM_000081.4(LYST):c.1251A>G (p.Gln417=)	rs1063128	0.41864
NM_000081.4(LYST):c.1683A>G (p.Leu561=)	rs3820553	0.41844
NM_000081.4(LYST):c.4956A>G (p.Leu1652=)	rs6696123	0.41826
NM_000081.4(LYST):c.5373G>A (p.Lys1791=)	rs2273584	0.41769
NM_000081.4(LYST):c.153A>C (p.Gly51=)	rs11464	0.13219
NM_000081.4(LYST):c.2355T>C (p.Leu785=)	rs3768066	0.10928
NM_000081.4(LYST):c.4392C>T (p.Asn1464=)	rs11583387	0.09239
NM_000081.4(LYST):c.2316C>T (p.Asp772=)	rs16832868	0.05899
NM_000081.4(LYST):c.5847G>C (p.Gln1949His)	rs6665568	0.05891
NM_000081.4(LYST):c.6630A>G (p.Glu2210=)	rs34466404	0.05877
NM_000081.4(LYST):c.574T>G (p.Leu192Val)	rs7524261	0.04386
NM_000081.4(LYST):c.8411G>A (p.Gly2804Asp)	rs35333195	0.04044
NM_000081.4(LYST):c.3989A>C (p.Asp1330Ala)	rs74641549	0.04030
NM_000081.4(LYST):c.3050G>A (p.Ser1017Asn)	rs10465613	0.03661
NM_000081.4(LYST):c.7857T>C (p.His2619=)	rs34160788	0.02966
NM_000081.4(LYST):c.6900G>A (p.Leu2300=)	rs10926586	0.02954
NM_000081.4(LYST):c.7137A>C (p.Leu2379=)	rs61738992	0.02884
NM_000081.4(LYST):c.7793T>A (p.Phe2598Tyr)	rs34642241	0.02388
NM_000081.4(LYST):c.9C>T (p.Thr3=)	rs33998267	0.01172
NM_000081.4(LYST):c.10941-7C>A	rs72761794	0.00614
NM_000081.4(LYST):c.7059+7G>A	rs111764031	0.00582
NM_000081.4(LYST):c.6812A>G (p.Asp2271Gly)	rs112601869	0.00580
NM_000081.4(LYST):c.8898T>C (p.Tyr2966=)	rs144475533	0.00560
NM_000081.4(LYST):c.5518T>G (p.Ser1840Ala)	rs115330112	0.00485
NM_000081.4(LYST):c.-5C>T	rs141317482	0.00475
NM_000081.4(LYST):c.10800+4G>T	rs41308172	0.00441
NM_000081.4(LYST):c.6482A>C (p.Glu2161Ala)	rs147756847	0.00416
NM_000081.4(LYST):c.1686G>C (p.Gln562His)	rs77091385	0.00394
NM_000081.4(LYST):c.6292G>A (p.Ala2098Thr)	rs146091043	0.00315
NM_000081.4(LYST):c.1384C>T (p.Pro462Ser)	rs77848653	0.00276
NM_000081.4(LYST):c.8913T>G (p.Asn2971Lys)	rs34702903	0.00276
NM_000081.4(LYST):c.6710A>C (p.Gln2237Pro)	rs138443479	0.00148
NM_000081.4(LYST):c.4337G>A (p.Arg1446Gln)	rs111722949	0.00135
NM_000081.4(LYST):c.8487C>T (p.Ile2829=)	rs144597913	0.00126
NM_000081.4(LYST):c.4548C>T (p.Ser1516=)	rs116551057	0.00108
NM_000081.4(LYST):c.7506A>G (p.Gln2502=)	rs140434436	0.00106
NM_000081.4(LYST):c.2769A>C (p.Ser923=)	rs112739986	0.00086
NM_000081.4(LYST):c.8027G>T (p.Ser2676Ile)	rs113209379	0.00086
NM_000081.4(LYST):c.10235G>A (p.Arg3412His)	rs148409403	0.00073
NM_000081.4(LYST):c.8368A>C (p.Lys2790Gln)	rs138506576	0.00061
NM_000081.4(LYST):c.2363+10dup	rs760632806	0.00058
NM_000081.4(LYST):c.8806G>A (p.Val2936Ile)	rs2753327	0.00052
NM_000081.4(LYST):c.3083C>G (p.Ser1028Cys)	rs150636017	0.00049
NM_000081.4(LYST):c.10526G>A (p.Arg3509Gln)	rs138936105	0.00046
NM_000081.4(LYST):c.3208A>G (p.Ile1070Val)	rs150321124	0.00043
NM_000081.4(LYST):c.1655T>C (p.Val552Ala)	rs199617821	0.00038
NM_000081.4(LYST):c.2946T>C (p.Tyr982=)	rs145892183	0.00034
NM_000081.4(LYST):c.8960C>G (p.Pro2987Arg)	rs147899661	0.00032
NM_000081.4(LYST):c.2313G>A (p.Gln771=)	rs147220685	0.00031
NM_000081.4(LYST):c.2963G>A (p.Arg988Gln)	rs150953050	0.00029
NM_000081.4(LYST):c.3394-14T>C	rs372892911	0.00029
NM_000081.4(LYST):c.368A>G (p.His123Arg)	rs3768067	0.00027
NM_000081.4(LYST):c.6487G>A (p.Ala2163Thr)	rs201513511	0.00026
NM_000081.4(LYST):c.7368T>C (p.Asn2456=)	rs199631995	0.00026
NM_000081.4(LYST):c.4578T>A (p.Asn1526Lys)	rs117609949	0.00025
NM_000081.4(LYST):c.2754G>A (p.Glu918=)	rs373577384	0.00022
NM_000081.4(LYST):c.8214G>C (p.Glu2738Asp)	rs140944484	0.00022
NM_000081.4(LYST):c.3898A>G (p.Ile1300Val)	rs199855658	0.00021
NM_000081.4(LYST):c.4006+8G>A	rs369153654	0.00021
NM_000081.4(LYST):c.9045-13T>C	rs181450025	0.00021
NM_000081.4(LYST):c.10477T>C (p.Phe3493Leu)	rs200511787	0.00020
NM_000081.4(LYST):c.2700A>G (p.Leu900=)	rs111463684	0.00017
NM_000081.4(LYST):c.6291C>T (p.Ala2097=)	rs199857997	0.00016
NM_000081.4(LYST):c.7806A>G (p.Gln2602=)	rs372754364	0.00014
NM_000081.4(LYST):c.1494A>G (p.Arg498=)	rs201412615	0.00013
NM_000081.4(LYST):c.2150A>G (p.Asn717Ser)	rs201255245	0.00013
NM_000081.4(LYST):c.2517T>C (p.Ile839=)	rs78172154	0.00012
NM_000081.4(LYST):c.3311G>A (p.Arg1104Gln)	rs148299757	0.00011
NM_000081.4(LYST):c.10221C>T (p.Tyr3407=)	rs146457386	0.00010
NM_000081.4(LYST):c.196T>C (p.Leu66=)	rs138393416	0.00010
NM_000081.4(LYST):c.281C>T (p.Thr94Ile)	rs777389303	0.00009
NM_000081.4(LYST):c.9520G>A (p.Val3174Ile)	rs199672291	0.00008
NM_000081.4(LYST):c.3931A>G (p.Met1311Val)	rs376718077	0.00007
NM_000081.4(LYST):c.3030A>G (p.Gly1010=)	rs751511204	0.00006
NM_000081.4(LYST):c.3834G>A (p.Leu1278=)	rs148542548	0.00006
NM_000081.4(LYST):c.5635-4A>G	rs754201076	0.00006
NM_000081.4(LYST):c.7862T>C (p.Met2621Thr)	rs368500877	0.00006
NM_000081.4(LYST):c.7911G>A (p.Thr2637=)	rs140229368	0.00006
NM_000081.4(LYST):c.110C>T (p.Thr37Met)	rs375106444	0.00004
NM_000081.4(LYST):c.11354G>A (p.Arg3785His)	rs370173269	0.00004
NM_000081.4(LYST):c.4705A>C (p.Asn1569His)	rs767687843	0.00004
NM_000081.4(LYST):c.10758C>T (p.Cys3586=)	rs145136281	0.00003
NM_000081.4(LYST):c.1996A>G (p.Ser666Gly)	rs140284566	0.00003
NM_000081.4(LYST):c.4566A>C (p.Ala1522=)	rs142344106	0.00003
NM_000081.4(LYST):c.4632C>T (p.Ser1544=)	rs373930104	0.00003
NM_000081.4(LYST):c.8497G>A (p.Ala2833Thr)	rs200813210	0.00003
NM_000081.4(LYST):c.2870T>C (p.Met957Thr)	rs201554916	0.00002
NM_000081.4(LYST):c.2724C>T (p.Cys908=)	rs201440611	0.00001
NM_000081.4(LYST):c.2908A>C (p.Ile970Leu)	rs539146732	0.00001
NM_000081.4(LYST):c.3310C>T (p.Arg1104Ter)	rs80338652	0.00001
NM_000081.4(LYST):c.6216A>G (p.Val2072=)	rs371248013	0.00001
NM_000081.4(LYST):c.8143G>A (p.Val2715Ile)	rs202010795	0.00001
NM_000081.4(LYST):c.*1211G>A
NM_000081.4(LYST):c.*1275T>C
NM_000081.4(LYST):c.*1295T>C
NM_000081.4(LYST):c.*1356G>T
NM_000081.4(LYST):c.*1379G>C
NM_000081.4(LYST):c.*1428T>G
NM_000081.4(LYST):c.*1438C>T
NM_000081.4(LYST):c.*1499G>T
NM_000081.4(LYST):c.*1533G>A
NM_000081.4(LYST):c.*1723A>G
NM_000081.4(LYST):c.*1792A>G
NM_000081.4(LYST):c.*1831A>C
NM_000081.4(LYST):c.*1861C>A
NM_000081.4(LYST):c.*191T>C
NM_000081.4(LYST):c.*246C>T
NM_000081.4(LYST):c.*247G>T
NM_000081.4(LYST):c.*275A>T
NM_000081.4(LYST):c.*319C>G
NM_000081.4(LYST):c.*329A>G
NM_000081.4(LYST):c.*446T>C
NM_000081.4(LYST):c.*519C>T
NM_000081.4(LYST):c.*5G>A
NM_000081.4(LYST):c.*685G>T
NM_000081.4(LYST):c.*694T>C
NM_000081.4(LYST):c.*712T>C
NM_000081.4(LYST):c.*725G>A
NM_000081.4(LYST):c.*809A>G
NM_000081.4(LYST):c.*824A>G
NM_000081.4(LYST):c.*831A>G
NM_000081.4(LYST):c.*873G>C
NM_000081.4(LYST):c.*891G>C
NM_000081.4(LYST):c.*907G>A
NM_000081.4(LYST):c.*921C>T
NM_000081.4(LYST):c.*94A>G
NM_000081.4(LYST):c.*962G>A
NM_000081.4(LYST):c.-7-14T>C
NM_000081.4(LYST):c.-97-13dup
NM_000081.4(LYST):c.-97-9T>G
NM_000081.4(LYST):c.10341G>A (p.Glu3447=)
NM_000081.4(LYST):c.10414T>C (p.Tyr3472His)
NM_000081.4(LYST):c.10525C>T (p.Arg3509Trp)
NM_000081.4(LYST):c.10657A>G (p.Ser3553Gly)
NM_000081.4(LYST):c.10707T>C (p.Thr3569=)
NM_000081.4(LYST):c.10733G>T (p.Cys3578Phe)
NM_000081.4(LYST):c.10740G>A (p.Leu3580=)
NM_000081.4(LYST):c.10838A>G (p.Tyr3613Cys)
NM_000081.4(LYST):c.10940+11A>T
NM_000081.4(LYST):c.11076C>T (p.Asn3692=)
NM_000081.4(LYST):c.11122G>A (p.Val3708Met)
NM_000081.4(LYST):c.11167G>A (p.Ala3723Thr)
NM_000081.4(LYST):c.11196-15T>G
NM_000081.4(LYST):c.11229A>G (p.Arg3743=)
NM_000081.4(LYST):c.11268-17dup	rs36014994
NM_000081.4(LYST):c.11268-6_11268-5del	rs36014994
NM_000081.4(LYST):c.1275C>G (p.Tyr425Ter)
NM_000081.4(LYST):c.1478A>G (p.His493Arg)
NM_000081.4(LYST):c.1565C>T (p.Ser522Leu)
NM_000081.4(LYST):c.1664A>C (p.His555Pro)
NM_000081.4(LYST):c.1722A>G (p.Leu574=)
NM_000081.4(LYST):c.1725G>A (p.Ser575=)
NM_000081.4(LYST):c.1766A>G (p.Lys589Arg)
NM_000081.4(LYST):c.1853T>A (p.Leu618His)
NM_000081.4(LYST):c.1913A>G (p.Asn638Ser)
NM_000081.4(LYST):c.193-3T>C
NM_000081.4(LYST):c.1940T>G (p.Leu647Arg)
NM_000081.4(LYST):c.1975T>C (p.Cys659Arg)
NM_000081.4(LYST):c.2004C>T (p.Ser668=)
NM_000081.4(LYST):c.2009CTT[1] (p.Ser671del)
NM_000081.4(LYST):c.2168A>G (p.Asn723Ser)
NM_000081.4(LYST):c.2258G>A (p.Ser753Asn)
NM_000081.4(LYST):c.2442T>A (p.Ser814Arg)
NM_000081.4(LYST):c.2444A>G (p.His815Arg)
NM_000081.4(LYST):c.244C>T (p.Leu82=)
NM_000081.4(LYST):c.2460T>G (p.Phe820Leu)
NM_000081.4(LYST):c.2465C>T (p.Thr822Ile)
NM_000081.4(LYST):c.2630G>C (p.Gly877Ala)
NM_000081.4(LYST):c.2681A>G (p.His894Arg)
NM_000081.4(LYST):c.2687A>G (p.Asn896Ser)
NM_000081.4(LYST):c.2725G>A (p.Val909Ile)
NM_000081.4(LYST):c.2806C>A (p.Pro936Thr)
NM_000081.4(LYST):c.280A>G (p.Thr94Ala)
NM_000081.4(LYST):c.2945A>G (p.Tyr982Cys)
NM_000081.4(LYST):c.3160A>G (p.Ser1054Gly)
NM_000081.4(LYST):c.3167A>C (p.Lys1056Thr)
NM_000081.4(LYST):c.3278G>A (p.Ser1093Asn)
NM_000081.4(LYST):c.3418T>C (p.Phe1140Leu)
NM_000081.4(LYST):c.3616G>C (p.Asp1206His)
NM_000081.4(LYST):c.3697G>A (p.Glu1233Lys)
NM_000081.4(LYST):c.3712+12T>C
NM_000081.4(LYST):c.372A>G (p.Leu124=)
NM_000081.4(LYST):c.3757A>C (p.Ser1253Arg)
NM_000081.4(LYST):c.3991G>A (p.Asp1331Asn)
NM_000081.4(LYST):c.4053A>G (p.Ser1351=)
NM_000081.4(LYST):c.4258A>G (p.Ser1420Gly)
NM_000081.4(LYST):c.5023+14G>A
NM_000081.4(LYST):c.5071C>T (p.Pro1691Ser)
NM_000081.4(LYST):c.5461-14A>T
NM_000081.4(LYST):c.5488A>T (p.Thr1830Ser)
NM_000081.4(LYST):c.5507G>A (p.Arg1836Gln)
NM_000081.4(LYST):c.5583T>C (p.Ile1861=)
NM_000081.4(LYST):c.5634+11A>G
NM_000081.4(LYST):c.5676G>A (p.Met1892Ile)
NM_000081.4(LYST):c.5774G>A (p.Ser1925Asn)
NM_000081.4(LYST):c.600C>T (p.His200=)
NM_000081.4(LYST):c.6079G>C (p.Val2027Leu)
NM_000081.4(LYST):c.6122-13del	rs201404906
NM_000081.4(LYST):c.6184G>A (p.Gly2062Arg)
NM_000081.4(LYST):c.6188G>A (p.Arg2063Lys)
NM_000081.4(LYST):c.6266C>G (p.Ser2089Cys)
NM_000081.4(LYST):c.643C>T (p.Pro215Ser)
NM_000081.4(LYST):c.6454A>C (p.Ser2152Arg)
NM_000081.4(LYST):c.6460G>A (p.Asp2154Asn)
NM_000081.4(LYST):c.6522T>C (p.Val2174=)
NM_000081.4(LYST):c.6548C>T (p.Ala2183Val)
NM_000081.4(LYST):c.6666C>G (p.Ser2222=)
NM_000081.4(LYST):c.6673C>T (p.Arg2225Cys)
NM_000081.4(LYST):c.6744A>G (p.Leu2248=)
NM_000081.4(LYST):c.6772G>C (p.Ala2258Pro)
NM_000081.4(LYST):c.6781C>T (p.Arg2261Cys)
NM_000081.4(LYST):c.6982G>A (p.Asp2328Asn)
NM_000081.4(LYST):c.7121G>A (p.Arg2374His)
NM_000081.4(LYST):c.7310C>G (p.Ser2437Cys)
NM_000081.4(LYST):c.7385C>A (p.Ala2462Glu)
NM_000081.4(LYST):c.7430C>T (p.Thr2477Ile)
NM_000081.4(LYST):c.7506A>C (p.Gln2502His)
NM_000081.4(LYST):c.7836A>G (p.Ser2612=)
NM_000081.4(LYST):c.7901C>T (p.Ala2634Val)
NM_000081.4(LYST):c.8152-8G>A
NM_000081.4(LYST):c.8222G>A (p.Arg2741Gln)
NM_000081.4(LYST):c.8242C>G (p.Leu2748Val)
NM_000081.4(LYST):c.8258C>T (p.Ser2753Leu)
NM_000081.4(LYST):c.8395A>G (p.Ile2799Val)
NM_000081.4(LYST):c.8503A>G (p.Thr2835Ala)
NM_000081.4(LYST):c.8535+7C>T
NM_000081.4(LYST):c.8537A>C (p.Glu2846Ala)
NM_000081.4(LYST):c.8560G>A (p.Glu2854Lys)
NM_000081.4(LYST):c.8742A>G (p.Lys2914=)
NM_000081.4(LYST):c.8801+15G>C
NM_000081.4(LYST):c.8818C>A (p.Pro2940Thr)
NM_000081.4(LYST):c.9162+11G>A
NM_000081.4(LYST):c.9162+15A>G
NM_000081.4(LYST):c.916T>G (p.Leu306Val)
NM_000081.4(LYST):c.9244T>C (p.Leu3082=)
NM_000081.4(LYST):c.9332A>G (p.Tyr3111Cys)
NM_000081.4(LYST):c.9542A>G (p.Asn3181Ser)
NM_000081.4(LYST):c.9666T>G (p.Asp3222Glu)
NM_000081.4(LYST):c.9710A>G (p.Tyr3237Cys)
NM_000081.4(LYST):c.9742G>A (p.Val3248Ile)

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