ClinVar Miner

List of variants in gene MSH2 reported as benign for not provided

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Gene type:
ClinVar version:
Total variants: 107
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HGVS dbSNP gnomAD frequency
NM_000251.3(MSH2):c.2006-127C>T rs2059521 0.99624
NM_000251.3(MSH2):c.943-244C>G rs11691516 0.58393
NM_000251.3(MSH2):c.211+9C>G rs2303426 0.55454
NM_000251.3(MSH2):c.211+98T>C rs3815865 0.55408
NM_000251.3(MSH2):c.1077-80G>A rs2347794 0.53152
NM_000251.3(MSH2):c.2210+175G>A rs4583514 0.50606
NM_000251.3(MSH2):c.2006-265A>G rs2059520 0.48792
NM_000251.3(MSH2):c.1510+111T>C rs3771278 0.46020
NM_000251.3(MSH2):c.1510+118T>C rs3771280 0.46018
NM_000251.3(MSH2):c.1759+183G>A rs3764960 0.42227
NM_000251.3(MSH2):c.1759+107A>G rs3764959 0.41882
NM_000251.3(MSH2):c.1511-91G>T rs3732182 0.41551
NM_000251.3(MSH2):c.1661+12G>A rs3732183 0.40290
NM_000251.3(MSH2):c.1277-212T>A rs1981928 0.39571
NM_000251.3(MSH2):c.1510+115A>G rs3771279 0.38757
NM_000251.3(MSH2):c.2210+274T>G rs4608577 0.19234
NM_000251.1(MSH2):c.-433T>G rs1863332 0.11834
NM_000251.3(MSH2):c.1661+305C>G rs17224682 0.11121
NM_000251.2(MSH2):c.-118T>C rs2303425 0.10354
NM_000251.3(MSH2):c.2006-216G>A rs10495944 0.09413
NM_000251.3(MSH2):c.2635-214T>C rs2042649 0.09372
NM_000251.3(MSH2):c.1511-9A>T rs12998837 0.09123
NM_000251.3(MSH2):c.646-224A>G rs17217786 0.09044
NM_000251.3(MSH2):c.367-168C>T rs17217758 0.08993
NM_000251.3(MSH2):c.2006-6T>C rs2303428 0.08349
NM_000251.3(MSH2):c.2635-111T>A rs6737098 0.07563
NM_000251.3(MSH2):c.367-306A>G rs183572778 0.06890
NM_000251.3(MSH2):c.792+172T>G rs150470483 0.06258
NM_000251.3(MSH2):c.646-172T>C rs6737783 0.05722
NM_000251.3(MSH2):c.1277-326G>T rs17218041 0.04474
NM_000251.3(MSH2):c.1387-250G>A rs6741393 0.04348
NM_000251.3(MSH2):c.2005+51T>G rs17218452 0.04306
NM_000251.3(MSH2):c.366+233C>G rs17224150 0.04191
NM_000251.3(MSH2):c.2005+42G>T rs17218446 0.03590
NM_000251.3(MSH2):c.1661+90T>C rs10183143 0.03147
NM_000251.3(MSH2):c.1760-62G>A rs17218439 0.02701
NM_000251.3(MSH2):c.1760-126A>T rs17224815 0.02380
NM_000251.3(MSH2):c.380A>G (p.Asn127Ser) rs17217772 0.02317
NM_000251.3(MSH2):c.211+171G>A rs17224122 0.02074
NM_000251.3(MSH2):c.942+304C>A rs17217849 0.02011
NM_000251.3(MSH2):c.573C>T (p.Leu191=) rs1800151 0.01972
NM_000251.3(MSH2):c.943-160G>A rs73927793 0.01947
NM_000251.3(MSH2):c.646-138A>G rs17217807 0.01883
NM_000251.3(MSH2):c.1276+51C>A rs17217961 0.01831
NM_000251.3(MSH2):c.965G>A (p.Gly322Asp) rs4987188 0.01714
NM_000251.3(MSH2):c.1511-266A>T rs6728346 0.01578
NM_000251.3(MSH2):c.1077-10T>C rs17224360 0.01428
NM_000251.3(MSH2):c.2766T>C (p.Phe922=) rs55859129 0.01118
NM_000251.3(MSH2):c.1077-225G>A rs192783837 0.00526
NM_000251.3(MSH2):c.984C>T (p.Ala328=) rs4987189 0.00495
NM_000251.3(MSH2):c.1662-9G>A rs17218356 0.00398
NM_000251.3(MSH2):c.23C>T (p.Thr8Met) rs17217716 0.00184
NM_000251.3(MSH2):c.2005+50_2005+51insG rs201831910 0.00113
NM_000251.3(MSH2):c.819A>G (p.Val273=) rs146577635 0.00101
NM_000251.3(MSH2):c.1680T>C (p.Asn560=) rs200056411 0.00043
NM_000251.3(MSH2):c.1886A>G (p.Gln629Arg) rs61756468 0.00042
NM_000251.3(MSH2):c.1168C>T (p.Leu390Phe) rs17224367 0.00039
NM_000251.3(MSH2):c.471C>A (p.Gly157=) rs61756463 0.00029
NM_000251.3(MSH2):c.1275A>G (p.Glu425=) rs63751650 0.00016
NM_000251.3(MSH2):c.1387-4G>C rs376796243 0.00011
NM_000251.3(MSH2):c.2210+7G>T rs374675118 0.00010
NM_000251.3(MSH2):c.2802G>A (p.Thr934=) rs150259097 0.00009
NM_000251.3(MSH2):c.1662-10C>T rs752606387 0.00008
NM_000251.3(MSH2):c.1690A>G (p.Thr564Ala) rs55778204 0.00008
NM_000251.3(MSH2):c.642A>G (p.Arg214=) rs768931909 0.00007
NM_000251.3(MSH2):c.2271C>T (p.Tyr757=) rs56076152 0.00006
NM_000251.3(MSH2):c.1830C>T (p.His610=) rs766326295 0.00004
NM_000251.3(MSH2):c.2120G>A (p.Cys707Tyr) rs373226409 0.00003
NM_000251.3(MSH2):c.2205C>T (p.Ile735=) rs533553381 0.00003
NM_000251.3(MSH2):c.2635-11A>G rs201291595 0.00002
NM_000251.3(MSH2):c.1760-7T>C rs972129356 0.00001
NM_000251.3(MSH2):c.2211-15A>T rs776161776 0.00001
NM_000251.3(MSH2):c.639G>A (p.Leu213=) rs751250018 0.00001
NM_000251.3(MSH2):c.1076+190del rs66560884
NM_000251.3(MSH2):c.1077-374C>G rs17217947
NM_000251.3(MSH2):c.1117A>C (p.Arg373=) rs781061998
NM_000251.3(MSH2):c.1276+132del rs878894023
NM_000251.3(MSH2):c.1277-118G>A rs1981929
NM_000251.3(MSH2):c.1277-3073AT[7] rs372352203
NM_000251.3(MSH2):c.1277-3182_1277-3139dup rs754179711
NM_000251.3(MSH2):c.1277-3221_1277-3214del rs148344471
NM_000251.3(MSH2):c.1277-3257TA[4] rs374230278
NM_000251.3(MSH2):c.1277-3296TA[4] rs35476653
NM_000251.3(MSH2):c.1277-3367_1277-3349del rs776752232
NM_000251.3(MSH2):c.1277-3396AT[3] rs143105512
NM_000251.3(MSH2):c.1511-13_1511-9delinsGT rs1558510749
NM_000251.3(MSH2):c.1661+17T>G rs377461923
NM_000251.3(MSH2):c.1662C>T (p.Ser554=) rs587778525
NM_000251.3(MSH2):c.1760-110_1760-108dup rs587779109
NM_000251.3(MSH2):c.2043A>G (p.Gln681=) rs730881763
NM_000251.3(MSH2):c.212-4del rs746333570
NM_000251.3(MSH2):c.212-4dup rs746333570
NM_000251.3(MSH2):c.2210+285T>G rs17224871
NM_000251.3(MSH2):c.2211-284dup rs550967151
NM_000251.3(MSH2):c.2276G>A (p.Gly759Glu) rs386833406
NM_000251.3(MSH2):c.2458+314G>C rs17218536
NM_000251.3(MSH2):c.2635-112dup rs201792963
NM_000251.3(MSH2):c.273TCT[2] (p.Leu94del) rs267607919
NM_000251.3(MSH2):c.367-86A>C rs17217765
NM_000251.3(MSH2):c.67T>C (p.Phe23Leu) rs372619120
NM_000251.3(MSH2):c.793-23G>A rs17224255
NM_000251.3(MSH2):c.942+24_942+29del rs11309117
NM_000251.3(MSH2):c.942+26_942+29del rs11309117
NM_000251.3(MSH2):c.942+27_942+29del rs11309117
NM_000251.3(MSH2):c.942+28_942+29del rs11309117
NM_000251.3(MSH2):c.942+29del rs11309117
NM_000251.3(MSH2):c.943-161C>T rs17224276

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