ClinVar Miner

List of variants in gene NRXN1 reported as benign

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 198
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HGVS dbSNP gnomAD frequency
NM_001330078.2(NRXN1):c.1158+307dup rs67879868 0.99999
NM_001330078.2(NRXN1):c.2375-105T>C rs7584062 0.99874
NM_001330078.2(NRXN1):c.3245-120A>C rs10168838 0.95887
NM_001330078.2(NRXN1):c.2144-89A>G rs2066948 0.87955
NM_001330078.2(NRXN1):c.3364+222G>A rs1879318 0.86935
NM_001330078.2(NRXN1):c.4128+126A>G rs1363050 0.75376
NM_001330078.2(NRXN1):c.1760-233A>T rs6545179 0.68387
NM_001330078.2(NRXN1):c.3809-245C>T rs10469912 0.60219
NM_001330078.2(NRXN1):c.3809-247T>C rs10469913 0.60176
NM_001330078.2(NRXN1):c.-922+232G>T rs2287234 0.59426
NM_001330078.2(NRXN1):c.2498-302G>T rs13001104 0.57170
NM_001330078.2(NRXN1):c.2498-300G>C rs13001103 0.57159
NM_001330078.2(NRXN1):c.3244+131A>T rs2075234 0.56631
NM_001330078.2(NRXN1):c.3071-281A>G rs6704933 0.56565
NM_001330078.2(NRXN1):c.3244+231G>T rs59300829 0.56132
NM_001330078.2(NRXN1):c.3071-149G>A rs2075233 0.55239
NM_001330078.2(NRXN1):c.3244+244T>C rs12713103 0.52880
NM_001330078.2(NRXN1):c.833-65920A>G rs9309189 0.47057
NM_001330078.2(NRXN1):c.3245-241T>C rs13398860 0.37845
NM_001330078.2(NRXN1):c.2375-203A>G rs7571753 0.34858
NM_001330078.2(NRXN1):c.3365-110377T>C rs13422484 0.34838
NM_001330078.2(NRXN1):c.3364+121A>T rs12713101 0.33895
NM_001330078.2(NRXN1):c.833-65905G>C rs9309188 0.31292
NM_001330078.2(NRXN1):c.3364+20T>C rs3213756 0.25608
NM_001330078.2(NRXN1):c.1321-56A>C rs13429627 0.25078
NM_001330078.2(NRXN1):c.832+135A>T rs36106628 0.24465
NM_001330078.2(NRXN1):c.-281T>C rs35228545 0.23029
NM_001330078.2(NRXN1):c.-421A>C rs67661616 0.22388
NM_001330078.2(NRXN1):c.772+162C>T rs13023341 0.22382
NM_001330078.2(NRXN1):c.4217-121T>C rs17039448 0.20704
NM_001330078.2(NRXN1):c.*1911G>T rs11885824 0.20346
NM_001330078.2(NRXN1):c.3546+226T>C rs1618655 0.19564
NM_001330078.2(NRXN1):c.3070+115C>A rs2241175 0.18478
NM_001330078.2(NRXN1):c.772+102G>C rs13426386 0.18380
NM_001330078.2(NRXN1):c.1321-229C>T rs13416514 0.17482
NM_001330078.2(NRXN1):c.511C>T (p.Leu171=) rs1045874 0.17452
NM_001330078.2(NRXN1):c.-951T>C rs2287235 0.17294
NM_001330078.2(NRXN1):c.2497+88C>A rs13008919 0.16480
NM_001330078.2(NRXN1):c.*110G>A rs1045881 0.14719
NM_001330078.2(NRXN1):c.*1327C>G rs12998798 0.14393
NM_001330078.2(NRXN1):c.3546+227C>T rs11889906 0.13819
NM_001330078.2(NRXN1):c.1321-212A>G rs13029649 0.13372
NM_001330078.2(NRXN1):c.821-84A>G rs4327263 0.11379
NM_001330078.2(NRXN1):c.832+267C>T rs62142981 0.08093
NM_001330078.2(NRXN1):c.-563G>C rs62143025 0.07837
NM_001330078.2(NRXN1):c.-602G>A rs62143026 0.07832
NM_001330078.2(NRXN1):c.821-54A>G rs7423296 0.07104
NM_001330078.2(NRXN1):c.2879+182T>C rs13386253 0.06759
NM_001330078.2(NRXN1):c.2879+231T>C rs13386159 0.06753
NM_001330078.2(NRXN1):c.3365-109930G>T rs13413205 0.06571
NM_001330078.2(NRXN1):c.3547-313T>C rs73932925 0.05433
NM_001330078.2(NRXN1):c.2143+163T>C rs72882073 0.05279
NM_001330078.2(NRXN1):c.2374+287T>G rs741351 0.05168
NM_001330078.2(NRXN1):c.2375-158G>C rs10175444 0.05094
NM_001330078.2(NRXN1):c.-922+165C>G rs75798965 0.04928
NM_001330078.2(NRXN1):c.832+82320C>A rs79444154 0.04660
NM_001330078.2(NRXN1):c.2880-234A>G rs77013102 0.04298
NM_001330078.2(NRXN1):c.1320+147T>C rs72885621 0.03632
NM_001330078.2(NRXN1):c.-883T>C rs10188340 0.03596
NM_001330078.2(NRXN1):c.3244+129C>A rs59507529 0.02748
NM_001330078.2(NRXN1):c.833-16192T>C rs73933013 0.02442
NM_001330078.2(NRXN1):c.832+82561C>T rs115598026 0.02174
NM_001330078.2(NRXN1):c.3547-162G>A rs78497262 0.02144
NM_001330078.2(NRXN1):c.772+1407C>G rs79697415 0.01975
NM_001330078.2(NRXN1):c.900C>T (p.Pro300=) rs2303298 0.01844
NM_001330078.2(NRXN1):c.1134+112A>T rs61190471 0.01709
NM_001330078.2(NRXN1):c.*1692T>C rs77838429 0.01480
NM_001330078.2(NRXN1):c.4068G>A (p.Thr1356=) rs74714098 0.01437
NM_001330078.2(NRXN1):c.*1539C>G rs112108943 0.01263
NM_001330078.2(NRXN1):c.*2511G>C rs148938313 0.01190
NM_001330078.2(NRXN1):c.*2878G>A rs146778534 0.01088
NM_001330078.2(NRXN1):c.*1365A>G rs147121881 0.01048
NM_001330078.2(NRXN1):c.4217-16A>C rs74520052 0.00964
NM_001330078.2(NRXN1):c.772+1140G>A rs61658382 0.00837
NM_001330078.2(NRXN1):c.3071-29T>C rs116737278 0.00759
NM_001330078.2(NRXN1):c.3408G>A (p.Thr1136=) rs80094872 0.00737
NM_001330078.2(NRXN1):c.3070+43G>T rs75486783 0.00711
NM_001330078.2(NRXN1):c.*2372G>A rs116370948 0.00580
NM_001330078.2(NRXN1):c.3249C>T (p.Pro1083=) rs116236999 0.00578
NM_001330078.2(NRXN1):c.2421C>T (p.Asn807=) rs115211871 0.00535
NM_001330078.2(NRXN1):c.2143+19A>G rs150513096 0.00534
NM_001330078.2(NRXN1):c.3547-29C>G rs74387895 0.00507
NM_001330078.2(NRXN1):c.3933A>G (p.Ala1311=) rs79970751 0.00503
NM_001330078.2(NRXN1):c.3365-109709A>G rs13023114 0.00487
NM_001330078.2(NRXN1):c.1760-16C>T rs79422704 0.00472
NM_001330078.2(NRXN1):c.2122C>A (p.Leu708Ile) rs56086732 0.00458
NM_001330078.2(NRXN1):c.*540T>A rs74421750 0.00411
NM_001330078.2(NRXN1):c.1285C>T (p.Pro429Ser) rs78540316 0.00323
NM_001330078.2(NRXN1):c.4473G>A (p.Ala1491=) rs113380721 0.00191
NM_001330078.2(NRXN1):c.2385C>G (p.Pro795=) rs147984237 0.00166
NM_001330078.2(NRXN1):c.1575A>G (p.Arg525=) rs201941844 0.00155
NM_001330078.2(NRXN1):c.501C>G (p.Leu167=) rs200248561 0.00145
NM_001330078.2(NRXN1):c.222C>T (p.Gly74=) rs201592993 0.00135
NM_001330078.2(NRXN1):c.3045C>T (p.Ala1015=) rs56402642 0.00109
NM_001330078.2(NRXN1):c.4254A>G (p.Pro1418=) rs55923848 0.00109
NM_001330078.2(NRXN1):c.-34C>A rs200335720 0.00096
NM_001330078.2(NRXN1):c.4275G>T (p.Arg1425=) rs143495349 0.00096
NM_001330078.2(NRXN1):c.3365-109703A>T rs199700602 0.00088
NM_001330078.2(NRXN1):c.2772C>T (p.Tyr924=) rs200182626 0.00083
NM_001330078.2(NRXN1):c.-922+7A>C rs200115353 0.00081
NM_001330078.2(NRXN1):c.2879+20A>G rs200986624 0.00076
NM_001330078.2(NRXN1):c.3365-109830G>A rs148517834 0.00074
NM_001330078.2(NRXN1):c.1158+26A>T rs201802152 0.00069
NM_001330078.2(NRXN1):c.3201C>T (p.Ser1067=) rs75275592 0.00069
NM_001330078.2(NRXN1):c.1945A>G (p.Ile649Val) rs200074974 0.00062
NM_001330078.2(NRXN1):c.105C>A (p.Gly35=) rs55640811 0.00059
NM_001330078.2(NRXN1):c.24C>T (p.Arg8=) rs200113281 0.00057
NM_001330078.2(NRXN1):c.-21C>A rs576405440 0.00054
NM_001330078.2(NRXN1):c.1365T>C (p.Leu455=) rs201727684 0.00051
NM_001330078.2(NRXN1):c.2605C>A (p.Leu869Met) rs201818223 0.00044
NM_001330078.2(NRXN1):c.3365-110013C>A rs1055335661 0.00035
NM_001330078.2(NRXN1):c.4392T>C (p.His1464=) rs112536447 0.00035
NM_001330078.2(NRXN1):c.3129A>G (p.Val1043=) rs200698497 0.00019
NM_001330078.2(NRXN1):c.2347+18C>A rs150460414 0.00016
NM_001330078.2(NRXN1):c.2193C>T (p.Leu731=) rs201466898 0.00014
NM_001330078.2(NRXN1):c.324G>A (p.Pro108=) rs199595253 0.00011
NM_001330078.2(NRXN1):c.3090A>C (p.Gly1030=) rs201886024 0.00010
NM_001330078.2(NRXN1):c.1134+8C>T rs200448187 0.00009
NM_001330078.2(NRXN1):c.4217-13C>T rs376269786 0.00009
NM_001330078.2(NRXN1):c.821-4A>G rs768708962 0.00009
NM_001330078.2(NRXN1):c.2037G>A (p.Pro679=) rs199714221 0.00008
NM_001330078.2(NRXN1):c.498G>A (p.Ala166=) rs201212909 0.00008
NM_001330078.2(NRXN1):c.1833T>C (p.Asp611=) rs190377845 0.00006
NM_001330078.2(NRXN1):c.2109C>T (p.Ser703=) rs200456688 0.00006
NM_001330078.2(NRXN1):c.2730G>A (p.Lys910=) rs192909520 0.00006
NM_001330078.2(NRXN1):c.772+1015C>A rs200375396 0.00006
NM_001330078.2(NRXN1):c.798G>A (p.Ala266=) rs201027928 0.00006
NM_001330078.2(NRXN1):c.2313A>G (p.Leu771=) rs779330397 0.00005
NM_001330078.2(NRXN1):c.3219C>T (p.Asn1073=) rs563089155 0.00005
NM_001330078.2(NRXN1):c.417G>A (p.Glu139=) rs757453009 0.00005
NM_001330078.2(NRXN1):c.4236C>T (p.Gly1412=) rs587781101 0.00004
NM_001330078.2(NRXN1):c.*18G>C rs201303041 0.00003
NM_001330078.2(NRXN1):c.261C>A (p.Gly87=) rs587781102 0.00003
NM_001330078.2(NRXN1):c.3403A>G (p.Ile1135Val) rs765360600 0.00003
NM_001330078.2(NRXN1):c.600C>T (p.Gly200=) rs201481698 0.00003
NM_001330078.2(NRXN1):c.882C>T (p.Tyr294=) rs200464704 0.00003
NM_001330078.2(NRXN1):c.1326A>C (p.Val442=) rs201485014 0.00001
NM_001330078.2(NRXN1):c.1759+16T>G rs202210123 0.00001
NM_001330078.2(NRXN1):c.4338T>C (p.Leu1446=) rs796052759 0.00001
NM_001330078.2(NRXN1):c.771A>G (p.Gln257=) rs1307802785 0.00001
GRCh37/hg19 2p16.3(chr2:50281917-50282100)x3
GRCh37/hg19 2p16.3(chr2:50605728-50618708)x3
GRCh37/hg19 2p16.3(chr2:50816879-50885859)x1
GRCh37/hg19 2p16.3(chr2:50882657-50947044)x1
GRCh37/hg19 2p16.3(chr2:50895613-50947044)x1
GRCh37/hg19 2p16.3(chr2:51070358-51411126)x1
GRCh37/hg19 2p16.3(chr2:51136802-51225497)x3
GRCh37/hg19 2p16.3(chr2:51181831-51520327)x1
GRCh37/hg19 2p16.3(chr2:51191432-51241789)x1
GRCh37/hg19 2p16.3(chr2:51224976-51225497)x0
GRCh37/hg19 2p16.3(chr2:51232182-51326497)x1
GRCh37/hg19 2p16.3(chr2:51241789-51411126)x1
GRCh37/hg19 2p16.3(chr2:51259160-51259694)x3
GRCh38/hg38 2p16.3(chr2:50743524-50780885)x3
GRCh38/hg38 2p16.3(chr2:50822507-50839440)x1
GRCh38/hg38 2p16.3(chr2:50822507-50894953)x1
NC_000002.12:g.51032510_51032523del rs1219088171
NC_000002.12:g.51032510_51032525del rs138189924
NC_000002.12:g.51032512GA[11] rs70958640
NM_001330078.2(NRXN1):c.*2105A>C rs112364713
NM_001330078.2(NRXN1):c.*967_*970dup rs3839058
NM_001330078.2(NRXN1):c.-28A>C rs796052760
NM_001330078.2(NRXN1):c.1135-13dup
NM_001330078.2(NRXN1):c.1760-11C>G rs199550097
NM_001330078.2(NRXN1):c.1843C>T (p.Leu615=) rs201029409
NM_001330078.2(NRXN1):c.219G>A (p.Glu73=) rs201031680
NM_001330078.2(NRXN1):c.2274C>A (p.Thr758=) rs78030925
NM_001330078.2(NRXN1):c.2347+53dup rs5831131
NM_001330078.2(NRXN1):c.2348-13C>A
NM_001330078.2(NRXN1):c.3071-284G>A rs2075232
NM_001330078.2(NRXN1):c.3244+232dup rs3214378
NM_001330078.2(NRXN1):c.3244+240C>T rs13029935
NM_001330078.2(NRXN1):c.3365-109893G>A rs546558752
NM_001330078.2(NRXN1):c.3365-109930GCG[6] rs750165040
NM_001330078.2(NRXN1):c.3365-109930GCG[8] rs750165040
NM_001330078.2(NRXN1):c.3365-109930GCG[9] rs750165040
NM_001330078.2(NRXN1):c.3546+195dup rs35377914
NM_001330078.2(NRXN1):c.3546+211del rs35377914
NM_001330078.2(NRXN1):c.3547-14dup
NM_001330078.2(NRXN1):c.3547-18dup rs749772679
NM_001330078.2(NRXN1):c.4128+71C>T rs1363049
NM_001330078.2(NRXN1):c.4216+113C>G rs1345562
NM_001330078.2(NRXN1):c.4216+17T>A rs200836763
NM_001330078.2(NRXN1):c.4216+17del rs2104381080
NM_001330078.2(NRXN1):c.773-13242G>A rs111529704
NM_001330078.2(NRXN1):c.832+132237G>A rs62140598
NM_001330078.2(NRXN1):c.832+1873C>T
NM_001330078.2(NRXN1):c.832+2687C>T
NM_001330078.2(NRXN1):c.832+82138A>G rs68157830
NM_001330078.2(NRXN1):c.833-66285CA[19] rs796892350
NM_001330078.2(NRXN1):c.833-66285CA[21] rs796892350
NM_001330078.2(NRXN1):c.833-66285CA[22] rs796892350
NM_001330078.2(NRXN1):c.833-66285CA[24] rs796892350
NM_001330078.2(NRXN1):c.833-66285CA[25] rs796892350
NM_004801.5(NRXN1):c.-1460_-1451delTCTCTCTCTT rs886056182
NM_138735.4(NRXN1):c.49GGC[11] (p.Gly17[11]) rs750165040
NM_138735.4(NRXN1):c.49GGC[7] (p.Gly17[7]) rs750165040
NM_138735.4(NRXN1):c.49[5] (p.Gly17[5]) rs750165040

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