ClinVar Miner

List of variants in gene SCN10A reported as likely benign by GeneDx

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Gene type:
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Total variants: 116
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HGVS dbSNP gnomAD frequency
NM_006514.4(SCN10A):c.270+135T>A rs72869618 0.02790
NM_006514.4(SCN10A):c.4281+276G>A rs28535395 0.02188
NM_006514.4(SCN10A):c.4281+100C>G rs141575712 0.02019
NM_006514.4(SCN10A):c.1291-308A>C rs116628149 0.01643
NM_006514.4(SCN10A):c.4089+206A>G rs76290694 0.01441
NM_006514.4(SCN10A):c.-32-56G>A rs111558766 0.01360
NM_006514.4(SCN10A):c.4089+52A>T rs13315383 0.01227
NM_006514.4(SCN10A):c.3507+150G>A rs76786776 0.01051
NM_006514.4(SCN10A):c.1291-310C>T rs149284340 0.00854
NM_006514.4(SCN10A):c.389+251C>T rs150127567 0.00825
NM_006514.4(SCN10A):c.1756-171A>G rs115322672 0.00824
NM_006514.4(SCN10A):c.4281+283G>A rs74598043 0.00764
NM_006514.4(SCN10A):c.4282-211C>T rs112208946 0.00680
NM_006514.4(SCN10A):c.3804+188G>A rs148118014 0.00674
NM_006514.4(SCN10A):c.691+122A>G rs116747483 0.00670
NM_006514.4(SCN10A):c.3682-245G>A rs112604496 0.00654
NM_006514.4(SCN10A):c.*47G>A rs116283332 0.00648
NM_006514.4(SCN10A):c.270+133_270+134insT rs200798617 0.00565
NM_006514.4(SCN10A):c.4387-29C>T rs189453271 0.00539
NM_006514.4(SCN10A):c.4657+304A>C rs74548823 0.00462
NM_006514.4(SCN10A):c.2280+90C>G rs189468147 0.00421
NM_006514.4(SCN10A):c.3508-148A>G rs6764493 0.00404
NM_006514.4(SCN10A):c.3508-122C>A rs6795880 0.00403
NM_006514.4(SCN10A):c.3682-159C>A rs60118537 0.00402
NM_006514.4(SCN10A):c.3681+27G>A rs76728612 0.00329
NM_006514.4(SCN10A):c.1756-163del rs560772996 0.00322
NM_006514.4(SCN10A):c.2280+64C>T rs192166263 0.00278
NM_006514.4(SCN10A):c.4416C>T (p.Ile1472=) rs144944369 0.00267
NM_006514.4(SCN10A):c.950+17T>C rs188914048 0.00231
NM_006514.4(SCN10A):c.1453C>T (p.Arg485Cys) rs151153639 0.00217
NM_006514.4(SCN10A):c.4568G>A (p.Cys1523Tyr) rs142217269 0.00134
NM_006514.4(SCN10A):c.5496T>C (p.Thr1832=) rs112374164 0.00127
NM_006514.4(SCN10A):c.-8A>T rs200901459 0.00123
NM_006514.4(SCN10A):c.2475A>C (p.Glu825Asp) rs146028829 0.00123
NM_006514.4(SCN10A):c.5295G>A (p.Ser1765=) rs145313578 0.00097
NM_006514.4(SCN10A):c.4143+219G>A rs138164487 0.00092
NM_006514.4(SCN10A):c.3859G>A (p.Val1287Ile) rs145032037 0.00086
NM_006514.4(SCN10A):c.1867+13C>T rs138063699 0.00072
NM_006514.4(SCN10A):c.648A>C (p.Thr216=) rs150977149 0.00060
NM_006514.4(SCN10A):c.1138G>A (p.Val380Ile) rs142276689 0.00055
NM_006514.4(SCN10A):c.853G>A (p.Glu285Lys) rs146151670 0.00054
NM_006514.4(SCN10A):c.4282-13G>A rs374834768 0.00053
NM_006514.4(SCN10A):c.5358C>T (p.Ile1786=) rs188413410 0.00053
NM_006514.4(SCN10A):c.4872C>T (p.Phe1624=) rs149642957 0.00049
NM_006514.4(SCN10A):c.3674T>C (p.Ile1225Thr) rs139638446 0.00048
NM_006514.4(SCN10A):c.1141A>G (p.Ile381Val) rs150923753 0.00041
NM_006514.4(SCN10A):c.1430C>T (p.Pro477Leu) rs142235256 0.00039
NM_006514.4(SCN10A):c.1266C>T (p.Leu422=) rs143438557 0.00038
NM_006514.4(SCN10A):c.1461+19T>A rs199927297 0.00038
NM_006514.4(SCN10A):c.1713G>A (p.Pro571=) rs148905110 0.00028
NM_006514.4(SCN10A):c.4378C>T (p.Arg1460Trp) rs148619598 0.00024
NM_006514.4(SCN10A):c.969T>C (p.Tyr323=) rs143668889 0.00023
NM_006514.4(SCN10A):c.4089+12A>T rs151164057 0.00019
NM_006514.4(SCN10A):c.53C>T (p.Pro18Leu) rs190176472 0.00019
NM_006514.4(SCN10A):c.1908C>T (p.Thr636=) rs147235762 0.00018
NM_006514.4(SCN10A):c.2709C>T (p.Asp903=) rs368637625 0.00016
NM_006514.4(SCN10A):c.1157T>G (p.Phe386Cys) rs78555408 0.00012
NM_006514.4(SCN10A):c.1277G>A (p.Arg426Gln) rs143033805 0.00011
NM_006514.4(SCN10A):c.4980G>A (p.Ser1660=) rs544529883 0.00011
NM_006514.4(SCN10A):c.1661T>C (p.Leu554Pro) rs138404783 0.00010
NM_006514.4(SCN10A):c.4983C>T (p.Ala1661=) rs775273379 0.00010
NM_006514.4(SCN10A):c.4584C>T (p.Phe1528=) rs141828577 0.00009
NM_006514.4(SCN10A):c.87T>C (p.Ala29=) rs148392780 0.00008
NM_006514.4(SCN10A):c.1949T>A (p.Met650Lys) rs201698323 0.00007
NM_006514.4(SCN10A):c.39C>T (p.Phe13=) rs181048561 0.00007
NM_006514.4(SCN10A):c.1914G>A (p.Leu638=) rs774983974 0.00006
NM_006514.4(SCN10A):c.2703G>A (p.Pro901=) rs142531478 0.00006
NM_006514.4(SCN10A):c.3681+16G>A rs746661487 0.00006
NM_006514.4(SCN10A):c.3705G>A (p.Ala1235=) rs147376215 0.00006
NM_006514.4(SCN10A):c.4282-16G>C rs376080236 0.00006
NM_006514.4(SCN10A):c.4515G>A (p.Thr1505=) rs191624001 0.00006
NM_006514.4(SCN10A):c.609C>A (p.Gly203=) rs532353167 0.00006
NM_006514.4(SCN10A):c.1093-7C>A rs374658847 0.00005
NM_006514.4(SCN10A):c.1233T>A (p.Ile411=) rs144482572 0.00005
NM_006514.4(SCN10A):c.3585T>C (p.Phe1195=) rs368972137 0.00005
NM_006514.4(SCN10A):c.5445C>T (p.Ser1815=) rs111535651 0.00005
NM_006514.4(SCN10A):c.1290+44C>T rs372191342 0.00004
NM_006514.4(SCN10A):c.1590C>T (p.His530=) rs770543896 0.00004
NM_006514.4(SCN10A):c.2450G>A (p.Arg817Gln) rs201068959 0.00004
NM_006514.4(SCN10A):c.3681+9C>T rs201158753 0.00004
NM_006514.4(SCN10A):c.372C>T (p.Ile124=) rs575521978 0.00004
NM_006514.4(SCN10A):c.1305A>G (p.Leu435=) rs1345381163 0.00003
NM_006514.4(SCN10A):c.258C>T (p.Tyr86=) rs201680315 0.00003
NM_006514.4(SCN10A):c.3990T>G (p.Ser1330=) rs149685953 0.00003
NM_006514.4(SCN10A):c.1197G>A (p.Ala399=) rs759422516 0.00002
NM_006514.4(SCN10A):c.5834A>G (p.Glu1945Gly) rs372702302 0.00002
NM_006514.4(SCN10A):c.612A>G (p.Thr204=) rs565457429 0.00002
NM_006514.4(SCN10A):c.1140A>T (p.Val380=) rs1057523742 0.00001
NM_006514.4(SCN10A):c.1260G>A (p.Glu420=) rs1057524558 0.00001
NM_006514.4(SCN10A):c.270+12T>C rs761698317 0.00001
NM_006514.4(SCN10A):c.3805-12A>G rs985392065 0.00001
NM_006514.4(SCN10A):c.5757G>A (p.Pro1919=) rs145340685 0.00001
NM_006514.4(SCN10A):c.903G>A (p.Lys301=) rs750691811 0.00001
NM_006514.4(SCN10A):c.1246AAG[1] (p.Lys417del) rs758898721
NM_006514.4(SCN10A):c.1290+115T>A rs111682647
NM_006514.4(SCN10A):c.1291-4G>A rs376077984
NM_006514.4(SCN10A):c.1518T>C (p.His506=) rs1553620505
NM_006514.4(SCN10A):c.2106+9T>C rs1057524209
NM_006514.4(SCN10A):c.2382G>A (p.Leu794=) rs1057523925
NM_006514.4(SCN10A):c.2641-197C>T rs142241842
NM_006514.4(SCN10A):c.2641-240C>T rs145966245
NM_006514.4(SCN10A):c.270+134AT[6] rs146665502
NM_006514.4(SCN10A):c.3508-262C>T rs77400992
NM_006514.4(SCN10A):c.3618G>A (p.Val1206=) rs1057523717
NM_006514.4(SCN10A):c.390-15A>G rs1057523824
NM_006514.4(SCN10A):c.41G>T (p.Arg14Leu) rs141207048
NM_006514.4(SCN10A):c.4386+329G>A rs78326800
NM_006514.4(SCN10A):c.4658-49G>T rs114963216
NM_006514.4(SCN10A):c.4694G>A (p.Ser1565Asn) rs200063383
NM_006514.4(SCN10A):c.5376G>A (p.Leu1792=) rs1488076050
NM_006514.4(SCN10A):c.5673T>C (p.Asp1891=) rs1559405463
NM_006514.4(SCN10A):c.599+7AT[3] rs750166682
NM_006514.4(SCN10A):c.691+101C>G rs113906876
NM_006514.4(SCN10A):c.692-100C>G rs149438235
NM_006514.4(SCN10A):c.883+111C>A rs74498991
NM_006514.4(SCN10A):c.883+27_883+62del rs573308926

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