ClinVar Miner

List of variants in gene SCN2A reported as likely benign for not provided

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Gene type:
ClinVar version:
Total variants: 171
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HGVS dbSNP gnomAD frequency
NM_001040142.2(SCN2A):c.387-99G>T rs73023764 0.01372
NM_001040142.2(SCN2A):c.268-280G>A rs61311571 0.01359
NM_001040142.2(SCN2A):c.4308+282T>C rs76286600 0.01160
NM_001040142.2(SCN2A):c.-51-61A>G rs13407286 0.01049
NM_001040142.2(SCN2A):c.1785T>C (p.Asp595=) rs141815642 0.01027
NM_001040142.2(SCN2A):c.-51-136C>T rs79293169 0.01011
NM_001040142.2(SCN2A):c.5919C>T (p.Pro1973=) rs73025979 0.00908
NM_001040142.2(SCN2A):c.2016+120G>A rs116522869 0.00875
NM_001040142.2(SCN2A):c.1671+64T>C rs144133675 0.00827
NM_001040142.2(SCN2A):c.1672-176T>A rs115509308 0.00823
NM_001040142.2(SCN2A):c.4254+233A>G rs116042841 0.00815
NM_001040142.2(SCN2A):c.2149+136C>T rs140497866 0.00811
NM_001040142.2(SCN2A):c.2388+126G>A rs142860891 0.00803
NM_001040142.2(SCN2A):c.1671+45A>T rs189735691 0.00777
NM_001040142.2(SCN2A):c.267+292C>T rs191176517 0.00609
NM_001040142.2(SCN2A):c.1035-113C>T rs150525722 0.00593
NM_001040142.2(SCN2A):c.5326C>T (p.Leu1776=) rs138123155 0.00559
NM_001040142.2(SCN2A):c.4309-42C>T rs75109281 0.00517
NM_001040142.2(SCN2A):c.2034A>G (p.Thr678=) rs147891446 0.00486
NM_001040142.2(SCN2A):c.3850-92C>T rs142658371 0.00480
NM_001040142.2(SCN2A):c.3520+327A>C rs138897712 0.00478
NM_001040142.2(SCN2A):c.3973-268G>A rs147704287 0.00478
NM_001040142.2(SCN2A):c.2150-236A>G rs116249800 0.00477
NM_001040142.2(SCN2A):c.3850-40T>C rs150568699 0.00379
NM_001040142.2(SCN2A):c.2723A>G (p.Lys908Arg) rs2228980 0.00365
NM_001040142.2(SCN2A):c.4552-216A>T rs114176465 0.00354
NM_001040142.2(SCN2A):c.4254+151C>A rs77580177 0.00349
NM_001040142.2(SCN2A):c.4551+173G>A rs150063549 0.00344
NM_001040142.2(SCN2A):c.3521-58C>G rs77343161 0.00336
NM_001040142.2(SCN2A):c.2149+22A>T rs191595857 0.00324
NM_001040142.2(SCN2A):c.3973-243A>T rs73969389 0.00284
NM_001040142.2(SCN2A):c.2955C>T (p.Ser985=) rs149859004 0.00252
NM_001040142.2(SCN2A):c.5910G>A (p.Thr1970=) rs75057869 0.00190
NM_001040142.2(SCN2A):c.3453C>T (p.Pro1151=) rs145662546 0.00166
NM_001040142.2(SCN2A):c.5229A>G (p.Lys1743=) rs2227898 0.00144
NM_001040142.2(SCN2A):c.3594G>A (p.Arg1198=) rs140194137 0.00096
NM_001040142.2(SCN2A):c.5446G>T (p.Ala1816Ser) rs147084515 0.00079
NM_001040142.2(SCN2A):c.100G>A (p.Ala34Thr) rs144814658 0.00063
NM_001040142.2(SCN2A):c.5155T>C (p.Leu1719=) rs199698414 0.00050
NM_001040142.2(SCN2A):c.1416A>G (p.Arg472=) rs200246820 0.00040
NM_001040142.2(SCN2A):c.4860G>A (p.Val1620=) rs369939991 0.00031
NM_001040142.2(SCN2A):c.82C>T (p.Arg28Cys) rs200884216 0.00027
NM_001040142.2(SCN2A):c.2923C>T (p.Leu975=) rs375858093 0.00025
NM_001040142.2(SCN2A):c.952G>A (p.Glu318Lys) rs149987700 0.00024
NM_001040142.2(SCN2A):c.5397T>C (p.Tyr1799=) rs200603552 0.00023
NM_001040142.2(SCN2A):c.879T>G (p.Thr293=) rs201685102 0.00019
NM_001040142.2(SCN2A):c.5517C>T (p.Leu1839=) rs148424455 0.00017
NM_001040142.2(SCN2A):c.4287T>C (p.Tyr1429=) rs150209984 0.00016
NM_001040142.2(SCN2A):c.5753G>A (p.Arg1918His) rs201718767 0.00015
NM_001040142.2(SCN2A):c.3954C>A (p.Ser1318=) rs139507841 0.00013
NM_001040142.2(SCN2A):c.*9C>A rs541483828 0.00012
NM_001040142.2(SCN2A):c.2050C>T (p.Arg684Trp) rs200783308 0.00012
NM_001040142.2(SCN2A):c.5121G>A (p.Leu1707=) rs377063535 0.00011
NM_001040142.2(SCN2A):c.5752C>T (p.Arg1918Cys) rs139899756 0.00011
NM_001040142.2(SCN2A):c.1759A>C (p.Ile587Leu) rs148275498 0.00010
NM_001040142.2(SCN2A):c.24G>A (p.Pro8=) rs149534277 0.00010
NM_001040142.2(SCN2A):c.2562+5A>G rs374738441 0.00010
NM_001040142.2(SCN2A):c.3123G>A (p.Pro1041=) rs147576541 0.00010
NM_001040142.2(SCN2A):c.1306T>C (p.Leu436=) rs376323449 0.00009
NM_001040142.2(SCN2A):c.3579C>A (p.Leu1193=) rs367546924 0.00009
NM_001040142.2(SCN2A):c.5208T>G (p.Asp1736Glu) rs200016923 0.00009
NM_001040142.2(SCN2A):c.5541G>A (p.Val1847=) rs371704720 0.00009
NM_001040142.2(SCN2A):c.2292C>T (p.Ala764=) rs760963593 0.00008
NM_001040142.2(SCN2A):c.5568C>T (p.Asp1856=) rs144058186 0.00008
NM_001040142.2(SCN2A):c.5574A>G (p.Leu1858=) rs767592553 0.00008
NM_001040142.2(SCN2A):c.1976G>A (p.Gly659Asp) rs368887417 0.00006
NM_001040142.2(SCN2A):c.3015T>C (p.Ile1005=) rs758652224 0.00006
NM_001040142.2(SCN2A):c.3330A>C (p.Gly1110=) rs138143967 0.00006
NM_001040142.2(SCN2A):c.3456C>T (p.Ala1152=) rs144325450 0.00006
NM_001040142.2(SCN2A):c.4221C>T (p.Asn1407=) rs747792907 0.00006
NM_001040142.2(SCN2A):c.5817A>G (p.Glu1939=) rs780514937 0.00006
NM_001040142.2(SCN2A):c.2661A>G (p.Val887=) rs749540280 0.00005
NM_001040142.2(SCN2A):c.5043T>C (p.Asn1681=) rs770118417 0.00005
NM_001040142.2(SCN2A):c.5217A>C (p.Gly1739=) rs2227899 0.00005
NM_001040142.2(SCN2A):c.1386G>A (p.Ala462=) rs145912536 0.00004
NM_001040142.2(SCN2A):c.1399G>A (p.Ala467Thr) rs745774658 0.00004
NM_001040142.2(SCN2A):c.1605A>G (p.Lys535=) rs367647572 0.00004
NM_001040142.2(SCN2A):c.1621T>C (p.Leu541=) rs763631456 0.00004
NM_001040142.2(SCN2A):c.1953T>C (p.Asn651=) rs199722574 0.00004
NM_001040142.2(SCN2A):c.2016+3G>A rs752881264 0.00004
NM_001040142.2(SCN2A):c.3213A>C (p.Gly1071=) rs199997352 0.00004
NM_001040142.2(SCN2A):c.3348T>C (p.Asn1116=) rs781717883 0.00004
NM_001040142.2(SCN2A):c.3411A>G (p.Ala1137=) rs112270017 0.00004
NM_001040142.2(SCN2A):c.4842G>T (p.Leu1614=) rs148604854 0.00004
NM_001040142.2(SCN2A):c.840A>G (p.Gln280=) rs377200041 0.00004
NM_001040142.2(SCN2A):c.1200G>A (p.Thr400=) rs532681917 0.00003
NM_001040142.2(SCN2A):c.1836C>T (p.Phe612=) rs747402663 0.00003
NM_001040142.2(SCN2A):c.1992A>G (p.Thr664=) rs368988956 0.00003
NM_001040142.2(SCN2A):c.2017-9T>C rs1451143110 0.00003
NM_001040142.2(SCN2A):c.2388+6C>A rs747774131 0.00003
NM_001040142.2(SCN2A):c.2563-4C>A rs561375550 0.00003
NM_001040142.2(SCN2A):c.2706C>G (p.Leu902=) rs192461273 0.00003
NM_001040142.2(SCN2A):c.3676-9G>T rs767017457 0.00003
NM_001040142.2(SCN2A):c.5127A>G (p.Gln1709=) rs938025387 0.00003
NM_001040142.2(SCN2A):c.5760C>T (p.Leu1920=) rs1449263336 0.00003
NM_001040142.2(SCN2A):c.1353A>G (p.Glu451=) rs559725593 0.00002
NM_001040142.2(SCN2A):c.1889G>A (p.Arg630His) rs150040573 0.00002
NM_001040142.2(SCN2A):c.2083T>C (p.Leu695=) rs368043574 0.00002
NM_001040142.2(SCN2A):c.2386C>T (p.Leu796=) rs943031760 0.00002
NM_001040142.2(SCN2A):c.3598A>G (p.Thr1200Ala) rs765909421 0.00002
NM_001040142.2(SCN2A):c.3624T>C (p.Asn1208=) rs552725434 0.00002
NM_001040142.2(SCN2A):c.3675+9T>C rs372657571 0.00002
NM_001040142.2(SCN2A):c.3850-3T>C rs1445707939 0.00002
NM_001040142.2(SCN2A):c.4135G>A (p.Val1379Met) rs779140322 0.00002
NM_001040142.2(SCN2A):c.414G>A (p.Thr138=) rs553026899 0.00002
NM_001371246.1(SCN2A):c.687T>C (p.Ser229=) rs746904068 0.00002
NM_001040142.2(SCN2A):c.1473T>G (p.Ser491=) rs1427996432 0.00001
NM_001040142.2(SCN2A):c.1613G>A (p.Arg538His) rs761203730 0.00001
NM_001040142.2(SCN2A):c.1623G>A (p.Leu541=) rs753341735 0.00001
NM_001040142.2(SCN2A):c.1672-3T>C rs769105267 0.00001
NM_001040142.2(SCN2A):c.1938C>T (p.Ser646=) rs528391611 0.00001
NM_001040142.2(SCN2A):c.1965C>T (p.Ser655=) rs914170392 0.00001
NM_001040142.2(SCN2A):c.2017-6T>C rs761771724 0.00001
NM_001040142.2(SCN2A):c.2236T>G (p.Leu746Val) rs772195737 0.00001
NM_001040142.2(SCN2A):c.2499T>C (p.Leu833=) rs1699364670 0.00001
NM_001040142.2(SCN2A):c.2643A>G (p.Leu881=) rs777805952 0.00001
NM_001040142.2(SCN2A):c.2811C>T (p.Arg937=) rs779791354 0.00001
NM_001040142.2(SCN2A):c.2859C>T (p.Val953=) rs139967593 0.00001
NM_001040142.2(SCN2A):c.2919+4T>C rs182428124 0.00001
NM_001040142.2(SCN2A):c.3133C>T (p.Leu1045=) rs369128399 0.00001
NM_001040142.2(SCN2A):c.3210C>T (p.Asp1070=) rs187731029 0.00001
NM_001040142.2(SCN2A):c.3400-24T>G rs201282702 0.00001
NM_001040142.2(SCN2A):c.3435G>A (p.Thr1145=) rs1345931602 0.00001
NM_001040142.2(SCN2A):c.3454G>A (p.Ala1152Thr) rs766523968 0.00001
NM_001040142.2(SCN2A):c.3735T>C (p.Ala1245=) rs527970192 0.00001
NM_001040142.2(SCN2A):c.4656C>T (p.Thr1552=) rs765041838 0.00001
NM_001040142.2(SCN2A):c.4977G>A (p.Ala1659=) rs1250394077 0.00001
NM_001040142.2(SCN2A):c.5319G>A (p.Ala1773=) rs373913233 0.00001
NM_001040142.2(SCN2A):c.5427G>A (p.Ala1809=) rs1177406324 0.00001
NM_001040142.2(SCN2A):c.5580T>G (p.Ala1860=) rs752845880 0.00001
NM_001040142.2(SCN2A):c.5658A>C (p.Ser1886=) rs902710874 0.00001
NM_001040142.2(SCN2A):c.618G>A (p.Glu206=) rs2228983 0.00001
NM_001040142.2(SCN2A):c.982T>G (p.Phe328Val) rs781204054 0.00001
NM_001040142.2(SCN2A):c.*437G>A rs553239308
NM_001040142.2(SCN2A):c.-51-16dup rs1325277297
NM_001040142.2(SCN2A):c.1035-55C>A rs77301739
NM_001040142.2(SCN2A):c.1200G>T (p.Thr400=) rs532681917
NM_001040142.2(SCN2A):c.1437G>A (p.Gly479=) rs940572077
NM_001040142.2(SCN2A):c.1672-2786C>T
NM_001040142.2(SCN2A):c.1672-2816C>T
NM_001040142.2(SCN2A):c.1833G>A (p.Leu611=) rs1057522258
NM_001040142.2(SCN2A):c.2016+6G>T rs748611550
NM_001040142.2(SCN2A):c.2157A>G (p.Glu719=) rs779574574
NM_001040142.2(SCN2A):c.2200A>G (p.Asn734Asp) rs1698664901
NM_001040142.2(SCN2A):c.2667C>T (p.Ala889=)
NM_001040142.2(SCN2A):c.2928C>T (p.Asn976=) rs2105336790
NM_001040142.2(SCN2A):c.3400-74dup rs3835933
NM_001040142.2(SCN2A):c.3456C>A (p.Ala1152=)
NM_001040142.2(SCN2A):c.3457G>A (p.Glu1153Lys) rs200138205
NM_001040142.2(SCN2A):c.3850-231G>A rs144431811
NM_001040142.2(SCN2A):c.3921A>G (p.Thr1307=) rs775124046
NM_001040142.2(SCN2A):c.4095T>C (p.His1365=) rs2105373121
NM_001040142.2(SCN2A):c.4146C>T (p.Asn1382=)
NM_001040142.2(SCN2A):c.4260G>A (p.Thr1420=) rs138241682
NM_001040142.2(SCN2A):c.4302A>G (p.Ser1434=) rs1574723701
NM_001040142.2(SCN2A):c.4353T>G (p.Leu1451=) rs2105384625
NM_001040142.2(SCN2A):c.4539A>T (p.Ile1513=) rs200553623
NM_001040142.2(SCN2A):c.4552-133dup rs78399411
NM_001040142.2(SCN2A):c.4552-268dup rs201637062
NM_001040142.2(SCN2A):c.4557A>G (p.Lys1519=) rs1574746483
NM_001040142.2(SCN2A):c.4626C>T (p.Cys1542=) rs1553463046
NM_001040142.2(SCN2A):c.4815C>T (p.Ser1605=)
NM_001040142.2(SCN2A):c.4854T>C (p.Tyr1618=) rs770349641
NM_001040142.2(SCN2A):c.5019C>A (p.Ile1673=) rs2105402438
NM_001040142.2(SCN2A):c.5211C>T (p.His1737=) rs2105402755
NM_001040142.2(SCN2A):c.5289C>G (p.Ser1763=) rs1381791914
NM_001040142.2(SCN2A):c.5805C>T (p.Asp1935=)
NM_001040142.2(SCN2A):c.603T>C (p.Phe201=) rs1697273790
NM_001040142.2(SCN2A):c.645G>A (p.Ala215=) rs370724112
NM_001040142.2(SCN2A):c.921C>G (p.Phe307Leu) rs1553568092
NM_001040142.2(SCN2A):c.966T>C (p.Asp322=)

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