ClinVar Miner

List of variants in gene SETD2 reported as benign

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Gene type:
ClinVar version:
Total variants: 155
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HGVS dbSNP gnomAD frequency
NM_014159.7(SETD2):c.5143-166G>A rs12631730 0.83696
NM_014159.7(SETD2):c.3465T>C (p.Asn1155=) rs6767907 0.65555
NM_014159.7(SETD2):c.7350+44C>T rs6768722 0.65313
NM_014159.7(SETD2):c.6109+230G>A rs9844122 0.65306
NM_014159.7(SETD2):c.6293+277G>A rs9845728 0.65269
NM_014159.7(SETD2):c.7432-94G>A rs2385867 0.55289
NM_014159.7(SETD2):c.5885C>T (p.Pro1962Leu) rs4082155 0.49386
NM_014159.7(SETD2):c.7098+140A>T rs13063578 0.45644
NM_014159.7(SETD2):c.5142+249C>G rs7644382 0.04583
NM_014159.7(SETD2):c.6964-283T>G rs9831464 0.04579
NM_014159.7(SETD2):c.7098+128T>C rs78188645 0.04409
NM_014159.7(SETD2):c.6109+45C>T rs79752114 0.03898
NM_014159.7(SETD2):c.3240G>A (p.Met1080Ile) rs76208147 0.02797
NM_014159.7(SETD2):c.6061-46A>G rs77252032 0.02786
NM_014159.7(SETD2):c.2704G>C (p.Glu902Gln) rs58906143 0.01669
NM_014159.7(SETD2):c.4872T>A (p.Ser1624=) rs75763513 0.01071
NM_014159.7(SETD2):c.3249A>C (p.Thr1083=) rs80241480 0.00871
NM_014159.7(SETD2):c.2543C>T (p.Ala848Val) rs75248784 0.00870
NM_014159.7(SETD2):c.557C>T (p.Pro186Leu) rs78759480 0.00723
NM_014159.7(SETD2):c.4455-12T>G rs180872586 0.00389
NM_014159.7(SETD2):c.5271C>T (p.Leu1757=) rs144825663 0.00389
NM_014159.7(SETD2):c.2783C>G (p.Thr928Arg) rs72895708 0.00228
NM_014159.7(SETD2):c.4320A>T (p.Pro1440=) rs74485823 0.00191
NM_014159.7(SETD2):c.2302G>C (p.Val768Leu) rs9311404 0.00182
NM_014159.7(SETD2):c.6173A>G (p.Asn2058Ser) rs116277395 0.00141
NM_014159.7(SETD2):c.3567C>T (p.Thr1189=) rs140803915 0.00131
NM_014159.7(SETD2):c.5143-20A>G rs201987175 0.00123
NM_014159.7(SETD2):c.3229A>G (p.Thr1077Ala) rs114719990 0.00095
NM_014159.7(SETD2):c.4059C>T (p.Ser1353=) rs113560046 0.00092
NM_014159.7(SETD2):c.1775C>A (p.Thr592Lys) rs115569620 0.00088
NM_014159.7(SETD2):c.3422C>T (p.Pro1141Leu) rs142723093 0.00088
NM_014159.7(SETD2):c.4011A>G (p.Glu1337=) rs115927459 0.00078
NM_014159.7(SETD2):c.5666T>C (p.Met1889Thr) rs148097513 0.00068
NM_014159.7(SETD2):c.3097A>G (p.Thr1033Ala) rs145759179 0.00063
NM_014159.7(SETD2):c.1415G>A (p.Arg472His) rs201984344 0.00050
NM_014159.7(SETD2):c.1885A>G (p.Lys629Glu) rs145650484 0.00047
NM_014159.7(SETD2):c.7164C>T (p.Thr2388=) rs144752494 0.00047
NM_014159.7(SETD2):c.6009G>A (p.Val2003=) rs148671940 0.00044
NM_014159.7(SETD2):c.1734A>T (p.Leu578Phe) rs138401612 0.00038
NM_014159.7(SETD2):c.1205G>A (p.Arg402Gln) rs182736967 0.00036
NM_014159.7(SETD2):c.664C>A (p.Leu222Ile) rs192262279 0.00035
NM_014159.7(SETD2):c.2251C>A (p.Pro751Thr) rs115788094 0.00034
NM_014159.7(SETD2):c.4193T>C (p.Ile1398Thr) rs145732065 0.00032
NM_014159.7(SETD2):c.4060G>A (p.Asp1354Asn) rs138005965 0.00031
NM_014159.7(SETD2):c.5900G>A (p.Gly1967Asp) rs143991928 0.00031
NM_014159.7(SETD2):c.590C>T (p.Ala197Val) rs374950143 0.00029
NM_014159.7(SETD2):c.3484C>T (p.His1162Tyr) rs137871492 0.00028
NM_014159.7(SETD2):c.4918-20G>C rs375933330 0.00028
NM_014159.7(SETD2):c.578C>T (p.Pro193Leu) rs77310684 0.00027
NM_014159.7(SETD2):c.2450T>C (p.Met817Thr) rs115023083 0.00026
NM_014159.7(SETD2):c.500C>T (p.Pro167Leu) rs78682369 0.00025
NM_014159.7(SETD2):c.5812G>A (p.Val1938Ile) rs116417406 0.00024
NM_014159.7(SETD2):c.6455A>G (p.Tyr2152Cys) rs139628048 0.00024
NM_014159.7(SETD2):c.335C>T (p.Ser112Leu) rs187767340 0.00023
NM_014159.7(SETD2):c.1412G>A (p.Arg471Lys) rs191313431 0.00021
NM_014159.7(SETD2):c.5851A>G (p.Thr1951Ala) rs146894026 0.00021
NM_014159.7(SETD2):c.2072C>T (p.Thr691Ile) rs371953347 0.00016
NM_014159.7(SETD2):c.2314A>G (p.Lys772Glu) rs142099709 0.00016
NM_014159.7(SETD2):c.3640A>G (p.Asn1214Asp) rs201177499 0.00013
NM_014159.7(SETD2):c.7060A>G (p.Thr2354Ala) rs145377213 0.00012
NM_014159.7(SETD2):c.2794G>A (p.Val932Ile) rs141532143 0.00010
NM_014159.7(SETD2):c.2798G>T (p.Gly933Val) rs202209141 0.00010
NM_014159.7(SETD2):c.2979T>G (p.Ser993=) rs575258352 0.00009
NM_014159.7(SETD2):c.1622G>A (p.Arg541Gln) rs144677816 0.00006
NM_014159.7(SETD2):c.5829C>G (p.Asn1943Lys) rs369421455 0.00006
NM_014159.7(SETD2):c.2155A>G (p.Asn719Asp) rs115859828 0.00005
NM_014159.7(SETD2):c.3026T>C (p.Met1009Thr) rs114527197 0.00005
NM_014159.7(SETD2):c.5565C>A (p.Leu1855=) rs201901024 0.00005
NM_014159.7(SETD2):c.4293A>G (p.Val1431=) rs746006058 0.00004
NM_014159.7(SETD2):c.7284T>C (p.Asp2428=) rs201285612 0.00004
NM_014159.7(SETD2):c.799G>A (p.Val267Ile) rs186148199 0.00004
NM_014159.7(SETD2):c.2113T>G (p.Ser705Ala) rs746219041 0.00003
NM_014159.7(SETD2):c.2452A>C (p.Lys818Gln) rs772334379 0.00003
NM_014159.7(SETD2):c.2603A>G (p.Asp868Gly) rs201752182 0.00003
NM_014159.7(SETD2):c.4187A>G (p.Asn1396Ser) rs781155076 0.00003
NM_014159.7(SETD2):c.475A>G (p.Thr159Ala) rs369333306 0.00003
NM_014159.7(SETD2):c.6013A>G (p.Ile2005Val) rs779750876 0.00003
NM_014159.7(SETD2):c.6236G>A (p.Ser2079Asn) rs755057984 0.00003
NM_014159.7(SETD2):c.1850C>T (p.Pro617Leu) rs758973573 0.00002
NM_014159.7(SETD2):c.1915G>A (p.Glu639Lys) rs761234986 0.00002
NM_014159.7(SETD2):c.2312C>G (p.Ser771Cys) rs1427099928 0.00002
NM_014159.7(SETD2):c.5127T>G (p.Ser1709=) rs776440125 0.00002
NM_014159.7(SETD2):c.6686T>G (p.Val2229Gly) rs377066147 0.00002
NM_014159.7(SETD2):c.6883A>G (p.Ile2295Val) rs759219467 0.00002
NM_014159.7(SETD2):c.7063A>G (p.Ile2355Val) rs995303125 0.00002
NM_014159.7(SETD2):c.1021T>A (p.Phe341Ile) rs1481483810 0.00001
NM_014159.7(SETD2):c.1687A>G (p.Ile563Val) rs587778668 0.00001
NM_014159.7(SETD2):c.2115G>A (p.Ser705=) rs771398677 0.00001
NM_014159.7(SETD2):c.2402A>G (p.Asn801Ser) rs1241448462 0.00001
NM_014159.7(SETD2):c.2819G>T (p.Gly940Val) rs751707090 0.00001
NM_014159.7(SETD2):c.2912C>G (p.Pro971Arg) rs939989327 0.00001
NM_014159.7(SETD2):c.3087A>T (p.Glu1029Asp) rs1024384980 0.00001
NM_014159.7(SETD2):c.3371C>T (p.Ala1124Val) rs538871720 0.00001
NM_014159.7(SETD2):c.5818A>G (p.Ser1940Gly) rs115156486 0.00001
NM_014159.7(SETD2):c.6029C>T (p.Thr2010Ile) rs2041416610 0.00001
NM_014159.7(SETD2):c.650C>A (p.Thr217Lys) rs1482249689 0.00001
NM_014159.7(SETD2):c.6724G>A (p.Ala2242Thr) rs750393537 0.00001
NM_014159.7(SETD2):c.1152A>G (p.Glu384=)
NM_014159.7(SETD2):c.1403C>T (p.Thr468Ile) rs2106698738
NM_014159.7(SETD2):c.1790G>A (p.Gly597Asp) rs774362891
NM_014159.7(SETD2):c.1849C>A (p.Pro617Thr) rs372521251
NM_014159.7(SETD2):c.1984C>G (p.Gln662Glu) rs2106683989
NM_014159.7(SETD2):c.2029C>T (p.Pro677Ser) rs764219907
NM_014159.7(SETD2):c.2294T>G (p.Val765Gly) rs1325359308
NM_014159.7(SETD2):c.2776A>G (p.Lys926Glu) rs1167396235
NM_014159.7(SETD2):c.2953G>C (p.Gly985Arg) rs760501131
NM_014159.7(SETD2):c.2956G>A (p.Glu986Lys) rs1559744630
NM_014159.7(SETD2):c.3152C>T (p.Ser1051Leu) rs2043085221
NM_014159.7(SETD2):c.3271A>C (p.Ser1091Arg) rs1206755591
NM_014159.7(SETD2):c.3287A>G (p.His1096Arg) rs2043077606
NM_014159.7(SETD2):c.3426A>C (p.Glu1142Asp) rs1161942915
NM_014159.7(SETD2):c.3614A>G (p.Tyr1205Cys) rs780702915
NM_014159.7(SETD2):c.3748C>G (p.His1250Asp) rs2043052732
NM_014159.7(SETD2):c.3850C>A (p.His1284Asn) rs1387669118
NM_014159.7(SETD2):c.4767T>C (p.Phe1589=)
NM_014159.7(SETD2):c.4839+90_4839+93del rs55987628
NM_014159.7(SETD2):c.4839+91_4839+93del rs55987628
NM_014159.7(SETD2):c.4839+92_4839+93del rs55987628
NM_014159.7(SETD2):c.4839+93del rs55987628
NM_014159.7(SETD2):c.4918-78AC[16] rs61571386
NM_014159.7(SETD2):c.4918-78AC[17] rs61571386
NM_014159.7(SETD2):c.4918-78AC[19] rs61571386
NM_014159.7(SETD2):c.4918-82GC[3] rs59089794
NM_014159.7(SETD2):c.5015+39_5015+40del rs60548476
NM_014159.7(SETD2):c.5143-166_5143-164del rs202029893
NM_014159.7(SETD2):c.5143-251_5143-249dup rs61660827
NM_014159.7(SETD2):c.5143-45del rs748501527
NM_014159.7(SETD2):c.5143-55dup rs748501527
NM_014159.7(SETD2):c.5277+121GTTT[6] rs56810001
NM_014159.7(SETD2):c.5277+238_5277+239insCTC rs10662952
NM_014159.7(SETD2):c.5398-13del
NM_014159.7(SETD2):c.5398-13dup rs558254213
NM_014159.7(SETD2):c.5398-45del rs5848822
NM_014159.7(SETD2):c.5398-46_5398-45del rs5848822
NM_014159.7(SETD2):c.5547G>A (p.Ser1849=)
NM_014159.7(SETD2):c.5872G>C (p.Ala1958Pro) rs377115716
NM_014159.7(SETD2):c.6039G>A (p.Leu2013=) rs2041416072
NM_014159.7(SETD2):c.6061-289del rs548953692
NM_014159.7(SETD2):c.6061-314dup rs548953692
NM_014159.7(SETD2):c.6109+199C>T rs73079603
NM_014159.7(SETD2):c.6110-157_6110-156del rs72459590
NM_014159.7(SETD2):c.6110-26del rs10589946
NM_014159.7(SETD2):c.6110-27_6110-26del rs10589946
NM_014159.7(SETD2):c.6342T>A (p.Asn2114Lys) rs2040130872
NM_014159.7(SETD2):c.6869A>T (p.Gln2290Leu)
NM_014159.7(SETD2):c.6970G>T (p.Ala2324Ser) rs1162711197
NM_014159.7(SETD2):c.7048G>A (p.Ala2350Thr) rs199739297
NM_014159.7(SETD2):c.7049C>A (p.Ala2350Glu)
NM_014159.7(SETD2):c.7068T>C (p.Val2356=) rs200525700
NM_014159.7(SETD2):c.7351-123G>A rs10510752
NM_014159.7(SETD2):c.7431+67C>T rs2290547
NM_014159.7(SETD2):c.7431+6_7431+28del rs761133077
NM_014159.7(SETD2):c.87+16C>T rs189001727
NM_014159.7(SETD2):c.88-21_88-20delinsTT
NM_014159.7(SETD2):c.985C>A (p.Arg329=) rs372869995

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