ClinVar Miner

List of intergenic variants studied for not specified

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 340
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NC_000005.10:g.126531402G>A rs4416599 1.00000
NC_000007.14:g.66643422T>C rs4718383 0.66703
NC_000007.14:g.67771556T>C rs35629450 0.61823
NC_000007.14:g.67766270A>G rs9691826 0.61804
NC_000007.14:g.67763644A>G rs13307299 0.61708
NC_000007.14:g.67772928A>C rs6964106 0.61672
NC_000007.14:g.67770265T>G rs6946808 0.61055
NC_000017.11:g.41539026C>T rs7212439 0.60455
NC_000007.14:g.67768864T>C rs34912838 0.60241
NC_000005.10:g.126540938dup rs34011388 0.55542
NC_000011.10:g.56698623C>T rs1397048 0.53098
NC_000011.10:g.56697829T>A rs1509995 0.51757
NC_000020.11:g.30399118C>A rs10084493 0.47849
NC_000020.11:g.8962307G>A rs6086714 0.46806
NC_000011.10:g.56685847C>T rs1588387 0.46365
NC_000011.10:g.56684041A>T rs4340069 0.46318
NC_000005.10:g.162036950C>A rs209329 0.46187
NC_000007.14:g.67770277A>G rs6942794 0.31723
NC_000011.10:g.121432497G>A rs17125336 0.29501
NC_000011.10:g.121431110C>A rs17125331 0.28646
NC_000017.11:g.19754534C>G rs56191443 0.25779
NC_000011.10:g.121431925T>A rs55736743 0.24553
NC_000011.10:g.121431937A>G rs17125333 0.24083
NC_000011.10:g.121432865T>G rs12417885 0.23885
NC_000011.10:g.121435753G>A rs4146874 0.23813
NC_000005.10:g.4478434A>C rs10066908 0.23511
NC_000006.12:g.135105435A>G rs4895441 0.21408
NC_000023.11:g.103181712T>C rs12854542 0.21125
NC_000018.10:g.22148844T>A rs72879076 0.17859
NC_000007.14:g.67751383T>A rs6977845 0.16536
NC_000012.12:g.9560817A>G rs200950634 0.02847
NC_000017.11:g.7666228C>G rs144366923 0.00672
NR_163594.1(SSPO):n.3802G>A rs111557139 0.00484
NR_163594.1(SSPO):n.6882C>T rs180821207 0.00437
NC_000020.11:g.30393436C>A rs73621499 0.00285
NC_000016.10:g.177603A>T rs545195355 0.00099
NC_000023.11:g.103181775C>G rs746040794 0.00061
NM_173679.1:c.*887G>A rs373178751 0.00039
NC_000016.10:g.177596T>G rs930009344 0.00027
NR_163594.1(SSPO):n.234A>T rs200197861 0.00023
NM_006865.5(LILRA3):c.1313G>A (p.Gly438Asp) rs143174959 0.00021
NR_028038.2(CASTOR3):n.508G>A rs568351142 0.00020
NR_163594.1(SSPO):n.553T>C rs368301523 0.00009
NR_163594.1(SSPO):n.1001A>G rs554032109 0.00007
NR_163594.1(SSPO):n.265C>T rs564966313 0.00007
NR_163594.1(SSPO):n.3259G>A rs553169604 0.00006
NM_173679.1:c.331C>T rs186891006 0.00005
NR_163594.1(SSPO):n.13236C>T rs562312025 0.00005
NR_163594.1(SSPO):n.1409G>A rs761863381 0.00005
NR_163594.1(SSPO):n.298G>T rs374297997 0.00005
NR_028038.2(CASTOR3):n.596T>C rs781154032 0.00004
NR_163594.1(SSPO):n.8482G>A rs754370745 0.00004
NR_163594.1(SSPO):n.904C>T rs202151333 0.00004
NR_028038.2(CASTOR3):n.470C>T rs201151121 0.00003
NR_028038.2(CASTOR3):n.634G>A rs766370313 0.00003
NR_163594.1(SSPO):n.10578C>T rs368462563 0.00003
NR_163594.1(SSPO):n.247C>T rs780577067 0.00003
NR_163594.1(SSPO):n.6121C>T rs746230558 0.00003
NR_163594.1(SSPO):n.838C>T rs928421863 0.00003
NR_163594.1(SSPO):n.1010T>A rs1387437336 0.00002
NR_163594.1(SSPO):n.2910C>T rs763109712 0.00002
NR_163594.1(SSPO):n.706G>A rs768958717 0.00002
NM_173679.1:c.*1082C>T rs1401566620 0.00001
NM_173679.1:c.*755C>T rs753833424 0.00001
NR_028038.2(CASTOR3):n.535A>G rs369353023 0.00001
NR_028038.2(CASTOR3):n.688A>G rs777445849 0.00001
NR_163594.1(SSPO):n.10431C>T rs1332067514 0.00001
NR_163594.1(SSPO):n.1102G>A rs1007910431 0.00001
NR_163594.1(SSPO):n.12033G>A rs760915870 0.00001
NR_163594.1(SSPO):n.12555C>T rs761823147 0.00001
NR_163594.1(SSPO):n.13408C>T rs548531128 0.00001
NR_163594.1(SSPO):n.1886C>T rs745455848 0.00001
NR_163594.1(SSPO):n.2082C>G rs746896422 0.00001
NR_163594.1(SSPO):n.3778G>A rs1181192740 0.00001
NR_163594.1(SSPO):n.4212G>A rs1355810899 0.00001
NR_163594.1(SSPO):n.4692C>T rs780358097 0.00001
NR_163594.1(SSPO):n.470G>A rs963656713 0.00001
NR_163594.1(SSPO):n.625C>T rs780180742 0.00001
NR_163594.1(SSPO):n.6309G>A rs754181529 0.00001
NR_163594.1(SSPO):n.683C>A rs758383511 0.00001
NR_163594.1(SSPO):n.694C>T rs537612062 0.00001
NR_163594.1(SSPO):n.7269G>A rs959207917 0.00001
NR_163594.1(SSPO):n.8052C>T rs780723162 0.00001
NR_163594.1(SSPO):n.8152G>A rs777709114 0.00001
NR_163594.1(SSPO):n.905G>A rs374726086 0.00001
NR_163594.1(SSPO):n.9978C>T rs757898840 0.00001
GRCh37/hg19 10p14(chr10:10875814-10962054)x1
GRCh37/hg19 11p14.2(chr11:26166090-26245567)x1
GRCh37/hg19 11p14.2(chr11:26167420-26245567)x1
GRCh37/hg19 12q14.3(chr12:67123301-67579538)x1
GRCh37/hg19 1p31.1(chr1:82134940-82242495)x3
GRCh37/hg19 3q25.2(chr3:154374528-154778328)x1
GRCh37/hg19 5q15(chr5:92828411-92911270)
GRCh37/hg19 6q25.1(chr6:149471775-149619493)x1
GRCh37/hg19 7q36.2(chr7:153778741-154268709)x3
GRCh37/hg19 7q36.2(chr7:153939110-154012649)x1
GRCh37/hg19 Xp22.33(chrX:168546-1001584)
GRCh37/hg19 Xp22.33(chrX:168546-1359249)
GRCh37/hg19 Xp22.33(chrX:201704-1023532)
GRCh37/hg19 Xp22.33(chrX:2885808-2906380)
GRCh37/hg19 Xp22.33(chrX:480574-837407)
GRCh37/hg19 Xp22.33(chrX:562054-1358900)
GRCh37/hg19 Xp22.33(chrX:570979-1358900)
GRCh37/hg19 Xp22.33(chrX:727225-2042258)
GRCh37/hg19 Xp22.33(chrX:878066-1411818)
GRCh37/hg19 Xp22.33(chrX:986336-2129785)
NC_000001.11:g.1014545C>T rs2799070
NC_000001.11:g.154628057A>G rs28411375
NC_000003.12:g.196027293A>G rs6782834
NC_000007.14:g.149811998C>T rs777214078
NC_000007.14:g.149812012G>C rs2486310795
NC_000007.14:g.149812049C>T
NC_000009.12:g.32891932T>C
NC_000009.12:g.32891948C>G
NC_000009.12:g.32925000G>T
NC_000009.12:g.32966630A>T
NC_000011.10:g.56455965_56455966del rs1853510701
NC_000011.10:g.56673649T>C rs7130569
NC_000011.10:g.56685650G>T rs7109249
NC_000011.10:g.56686812G>A rs7113794
NC_000011.10:g.56689664T>C rs55848395
NC_000011.10:g.56693468GTT[6] rs3071452
NC_000012.12:g.9542835G>T rs2536884
NC_000012.12:g.9542837A>G rs1360001942
NC_000012.12:g.9557442A>G rs79964986
NC_000015.10:g.38565430C>G rs60389828
NC_000016.10:g.173755A>T rs2261869
NC_000016.10:g.30183126A>C rs74183730
NC_000017.11:g.41535537G>A rs963478
NC_000018.10:g.22148845C>A rs62092220
NC_000020.11:g.30391112C>T rs4635596
NC_000020.11:g.30393423G>C rs73621498
NC_000020.11:g.30393452C>T rs73621500
NC_000020.11:g.30393488G>A rs62199575
NC_000023.11:g.15335567T>C rs4830938
NM_002796.2(PSMB4):c.-17C>T rs2296840
NM_138348.5(OTULIN):c.-114G>A rs250435
NM_173679.1:c.*1350C>T rs2486376808
NM_173679.1:c.*1422G>A rs1258492887
NM_173679.1:c.261C>T rs2486350215
NM_173679.1:c.399G>A rs2486352269
NM_173679.1:c.399G>C rs2486352269
NR_028038.2(CASTOR3):n.416T>C
NR_028038.2(CASTOR3):n.543G>T
NR_028038.2(CASTOR3):n.566T>A
NR_028038.2(CASTOR3):n.607T>C
NR_028038.2(CASTOR3):n.614A>G rs750039043
NR_028038.2(CASTOR3):n.668C>T
NR_163594.1(SSPO):n.10065C>A
NR_163594.1(SSPO):n.10065C>T
NR_163594.1(SSPO):n.10114G>A rs2486314715
NR_163594.1(SSPO):n.10171G>A
NR_163594.1(SSPO):n.10171G>C rs2486314889
NR_163594.1(SSPO):n.10221C>T rs2486315030
NR_163594.1(SSPO):n.10263C>T rs2486315112
NR_163594.1(SSPO):n.10299G>A rs1214145810
NR_163594.1(SSPO):n.10311C>T
NR_163594.1(SSPO):n.1033A>G
NR_163594.1(SSPO):n.10360A>G rs2486317743
NR_163594.1(SSPO):n.10461G>A
NR_163594.1(SSPO):n.10495C>T
NR_163594.1(SSPO):n.10509G>A rs974742526
NR_163594.1(SSPO):n.10600C>T rs866469277
NR_163594.1(SSPO):n.10603C>T rs1282780992
NR_163594.1(SSPO):n.10716C>T
NR_163594.1(SSPO):n.10809C>A rs2486320379
NR_163594.1(SSPO):n.10821G>A rs2486320514
NR_163594.1(SSPO):n.10865G>C rs760438107
NR_163594.1(SSPO):n.10866C>T rs2486320694
NR_163594.1(SSPO):n.10887G>A
NR_163594.1(SSPO):n.10938G>A rs2486321885
NR_163594.1(SSPO):n.11232C>T
NR_163594.1(SSPO):n.11296G>A rs1800877998
NR_163594.1(SSPO):n.11296G>C rs1800877998
NR_163594.1(SSPO):n.11442G>A
NR_163594.1(SSPO):n.11667C>A rs2486328076
NR_163594.1(SSPO):n.1169G>T
NR_163594.1(SSPO):n.11802C>T rs1800941277
NR_163594.1(SSPO):n.11867G>C rs757831645
NR_163594.1(SSPO):n.11874T>C
NR_163594.1(SSPO):n.11917C>T rs2486331140
NR_163594.1(SSPO):n.12087A>T rs770658520
NR_163594.1(SSPO):n.12197C>G rs2486332520
NR_163594.1(SSPO):n.12246G>A
NR_163594.1(SSPO):n.1240C>T rs1192296236
NR_163594.1(SSPO):n.12415A>G rs2486335378
NR_163594.1(SSPO):n.12430G>T rs1243565225
NR_163594.1(SSPO):n.12497C>G rs757650605
NR_163594.1(SSPO):n.12509C>G rs2486335637
NR_163594.1(SSPO):n.12685G>A rs1202544990
NR_163594.1(SSPO):n.12748A>G
NR_163594.1(SSPO):n.12788G>C rs2486337555
NR_163594.1(SSPO):n.1280C>T
NR_163594.1(SSPO):n.12855C>T rs2486338716
NR_163594.1(SSPO):n.13087G>A
NR_163594.1(SSPO):n.13216G>A
NR_163594.1(SSPO):n.13237G>A rs58369703
NR_163594.1(SSPO):n.13239G>A
NR_163594.1(SSPO):n.13291G>A rs2486341575
NR_163594.1(SSPO):n.13291G>C rs2486341575
NR_163594.1(SSPO):n.13299G>T rs547007891
NR_163594.1(SSPO):n.13320G>A
NR_163594.1(SSPO):n.1334C>T
NR_163594.1(SSPO):n.13362A>G
NR_163594.1(SSPO):n.13375C>T rs1186787953
NR_163594.1(SSPO):n.13410G>A
NR_163594.1(SSPO):n.13413C>T rs747347684
NR_163594.1(SSPO):n.13530T>G rs1586018629
NR_163594.1(SSPO):n.13576C>T rs751818089
NR_163594.1(SSPO):n.13708G>T
NR_163594.1(SSPO):n.13734G>A
NR_163594.1(SSPO):n.14386C>T
NR_163594.1(SSPO):n.14489C>T
NR_163594.1(SSPO):n.14519C>A
NR_163594.1(SSPO):n.14913G>A
NR_163594.1(SSPO):n.15229C>T rs267601403
NR_163594.1(SSPO):n.1537G>A
NR_163594.1(SSPO):n.15550G>C
NR_163594.1(SSPO):n.1576C>T rs2486232245
NR_163594.1(SSPO):n.1694C>T rs2486233389
NR_163594.1(SSPO):n.1714G>A rs570178167
NR_163594.1(SSPO):n.1762G>T rs1258201011
NR_163594.1(SSPO):n.1844C>T rs1799761148
NR_163594.1(SSPO):n.1958C>T
NR_163594.1(SSPO):n.2045C>T rs2486238042
NR_163594.1(SSPO):n.2267C>T
NR_163594.1(SSPO):n.2425C>T
NR_163594.1(SSPO):n.2639C>T
NR_163594.1(SSPO):n.2689G>A rs1295846246
NR_163594.1(SSPO):n.2943C>T
NR_163594.1(SSPO):n.3069C>T rs1799860192
NR_163594.1(SSPO):n.3222C>T
NR_163594.1(SSPO):n.344A>G
NR_163594.1(SSPO):n.3501C>A
NR_163594.1(SSPO):n.365G>A
NR_163594.1(SSPO):n.365G>T
NR_163594.1(SSPO):n.3718G>A rs2486250253
NR_163594.1(SSPO):n.3837G>A rs777201179
NR_163594.1(SSPO):n.3880C>A rs1446065481
NR_163594.1(SSPO):n.3883C>T rs770641836
NR_163594.1(SSPO):n.3961G>A rs2486251906
NR_163594.1(SSPO):n.3997C>G rs764475388
NR_163594.1(SSPO):n.4038G>A rs2486252286
NR_163594.1(SSPO):n.4060G>A
NR_163594.1(SSPO):n.424C>T
NR_163594.1(SSPO):n.433G>A
NR_163594.1(SSPO):n.437A>C
NR_163594.1(SSPO):n.4549G>A
NR_163594.1(SSPO):n.4602C>T
NR_163594.1(SSPO):n.4615C>T
NR_163594.1(SSPO):n.4635C>T
NR_163594.1(SSPO):n.4696C>T rs2486256921
NR_163594.1(SSPO):n.469C>T
NR_163594.1(SSPO):n.470G>T
NR_163594.1(SSPO):n.4780G>T rs2486257156
NR_163594.1(SSPO):n.4792G>C rs2486257204
NR_163594.1(SSPO):n.4861T>C rs2486257387
NR_163594.1(SSPO):n.527C>T
NR_163594.1(SSPO):n.5280C>T
NR_163594.1(SSPO):n.5422C>T
NR_163594.1(SSPO):n.5475C>A rs2486260543
NR_163594.1(SSPO):n.5577G>C rs2486261137
NR_163594.1(SSPO):n.561G>C
NR_163594.1(SSPO):n.5690G>T rs2486261479
NR_163594.1(SSPO):n.5716G>C
NR_163594.1(SSPO):n.5875G>A rs987717487
NR_163594.1(SSPO):n.5913G>C rs2486262598
NR_163594.1(SSPO):n.5956G>A rs2486262920
NR_163594.1(SSPO):n.6013G>T rs766732621
NR_163594.1(SSPO):n.610C>T
NR_163594.1(SSPO):n.6153C>A
NR_163594.1(SSPO):n.6161G>T
NR_163594.1(SSPO):n.617T>C rs2486225247
NR_163594.1(SSPO):n.6212G>C rs750498766
NR_163594.1(SSPO):n.6351G>A rs1800130158
NR_163594.1(SSPO):n.653C>T rs773744413
NR_163594.1(SSPO):n.6562C>A
NR_163594.1(SSPO):n.6571C>A
NR_163594.1(SSPO):n.6625G>A rs2486269501
NR_163594.1(SSPO):n.6700C>T rs2486269637
NR_163594.1(SSPO):n.674C>T rs575311000
NR_163594.1(SSPO):n.6887G>A rs2486271887
NR_163594.1(SSPO):n.6894G>A rs2486271915
NR_163594.1(SSPO):n.713G>A
NR_163594.1(SSPO):n.724C>G rs2486225641
NR_163594.1(SSPO):n.7274T>A rs2486279207
NR_163594.1(SSPO):n.7357G>A rs2486279415
NR_163594.1(SSPO):n.739C>T
NR_163594.1(SSPO):n.7405C>T
NR_163594.1(SSPO):n.7493G>T
NR_163594.1(SSPO):n.7538G>C
NR_163594.1(SSPO):n.7597C>T rs2486284802
NR_163594.1(SSPO):n.7659C>G rs1800390382
NR_163594.1(SSPO):n.7756C>T rs748335783
NR_163594.1(SSPO):n.7779G>A
NR_163594.1(SSPO):n.7806G>C rs752788322
NR_163594.1(SSPO):n.7818G>A rs948369774
NR_163594.1(SSPO):n.7885C>T
NR_163594.1(SSPO):n.7888C>T rs1800403811
NR_163594.1(SSPO):n.7894C>G rs957241468
NR_163594.1(SSPO):n.7911C>T
NR_163594.1(SSPO):n.7914G>A rs2486286214
NR_163594.1(SSPO):n.8016G>A
NR_163594.1(SSPO):n.8254T>C rs2486289501
NR_163594.1(SSPO):n.8319T>C
NR_163594.1(SSPO):n.8355G>A
NR_163594.1(SSPO):n.8367C>T rs2486290384
NR_163594.1(SSPO):n.8403G>A
NR_163594.1(SSPO):n.8431G>A rs2486291070
NR_163594.1(SSPO):n.8431G>T rs2486291070
NR_163594.1(SSPO):n.8440C>G rs540141502
NR_163594.1(SSPO):n.8475T>C
NR_163594.1(SSPO):n.8538G>A rs1800481960
NR_163594.1(SSPO):n.8548G>T rs765565140
NR_163594.1(SSPO):n.8677G>C
NR_163594.1(SSPO):n.8698C>T
NR_163594.1(SSPO):n.9025T>C rs2486299620
NR_163594.1(SSPO):n.9046A>T
NR_163594.1(SSPO):n.9080C>T
NR_163594.1(SSPO):n.9226G>T
NR_163594.1(SSPO):n.923C>G
NR_163594.1(SSPO):n.9245G>A
NR_163594.1(SSPO):n.9277C>A
NR_163594.1(SSPO):n.9277C>G
NR_163594.1(SSPO):n.9331G>A
NR_163594.1(SSPO):n.9382A>G
NR_163594.1(SSPO):n.9518G>A
NR_163594.1(SSPO):n.9771G>A
NR_163594.1(SSPO):n.9826G>A rs2486309884
NR_163594.1(SSPO):n.9843G>A rs760033835
NR_163594.1(SSPO):n.9928C>T rs1800737771
NR_163594.1(SSPO):n.9946C>T rs1408017028
NR_163594.1(SSPO):n.9975C>A rs2486311870
Single allele
t(10;14)(p14;q24)dn
t(15;16)(q24;p13)dn
t(1;14)(q25;q11)dn
t(2;14)(p11.2;q11.2)dn
t(6;18)(q14.1;q21.1)dn
t(9;21)(p21;q22)dn

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