ClinVar Miner

List of variants reported as uncertain significance for complex neurodevelopmental disorder by Victorian Clinical Genetics Services, Murdoch Childrens Research Institute

Included ClinVar conditions (297):
Minimum submission review status: Collection method:
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ClinVar version:
Total variants: 88
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HGVS dbSNP gnomAD frequency
NM_152743.4(BRAT1):c.826G>A (p.Asp276Asn) rs146546197 0.00070
NM_004341.5(CAD):c.5392C>A (p.Gln1798Lys) rs138840581 0.00062
NM_152743.4(BRAT1):c.955G>A (p.Val319Ile) rs140903769 0.00034
NM_001127222.2(CACNA1A):c.6527G>T (p.Gly2176Val) rs763045560 0.00008
NM_001365999.1(SZT2):c.670C>T (p.Arg224Trp) rs930525688 0.00004
NM_001365999.1(SZT2):c.9866G>T (p.Gly3289Val) rs371736872 0.00004
NM_001037.5(SCN1B):c.448+100G>T rs779658201 0.00002
NM_001184880.2(PCDH19):c.1210A>G (p.Thr404Ala) rs746891808 0.00002
NM_001099922.3(ALG13):c.2066A>G (p.Tyr689Cys) rs1470650822 0.00001
NM_001127222.2(CACNA1A):c.1213G>A (p.Ala405Thr) rs121908245 0.00001
NM_001130438.3(SPTAN1):c.6178G>C (p.Glu2060Gln) rs751423380 0.00001
NM_001184880.2(PCDH19):c.1982A>C (p.Tyr661Ser) rs1928354837 0.00001
NM_001205293.3(CACNA1E):c.2387C>T (p.Ala796Val) rs1320817023 0.00001
NM_001393504.1(MAST3):c.3853G>A (p.Glu1285Lys) rs1414358056 0.00001
NM_002641.4(PIGA):c.1177A>G (p.Arg393Gly) rs781095752 0.00001
NM_003705.5(SLC25A12):c.870G>C (p.Glu290Asp) rs757002057 0.00001
NM_015178.3(RHOBTB2):c.779T>C (p.Leu260Pro) rs1018003807 0.00001
NM_016373.4(WWOX):c.500G>A (p.Arg167His) rs377356629 0.00001
NM_172107.4(KCNQ2):c.1382A>C (p.Gln461Pro) rs1057516116 0.00001
NM_000812.4(GABRB1):c.1243G>C (p.Gly415Arg)
NM_000814.6(GABRB3):c.1052A>G (p.Asn351Ser) rs763319754
NM_000814.6(GABRB3):c.1340C>T (p.Ala447Val)
NM_001040142.2(SCN2A):c.2189A>T (p.Tyr730Phe)
NM_001040142.2(SCN2A):c.5750G>A (p.Arg1917Lys) rs2105403810
NM_001040142.2(SCN2A):c.606A>G (p.Ala202=) rs2105244839
NM_001127222.2(CACNA1A):c.1106G>A (p.Arg369Gln)
NM_001127222.2(CACNA1A):c.2075A>G (p.Tyr692Cys) rs2057841267
NM_001127222.2(CACNA1A):c.3584C>T (p.Pro1195Leu) rs1568493631
NM_001127222.2(CACNA1A):c.4328A>G (p.Asp1443Gly) rs2056674575
NM_001127222.2(CACNA1A):c.6862del (p.Gln2288fs) rs2144493067
NM_001127222.2(CACNA1A):c.7109G>A (p.Arg2370Gln)
NM_001127222.2(CACNA1A):c.7318G>A (p.Val2440Ile)
NM_001127222.2(CACNA1A):c.979-3C>G
NM_001130438.3(SPTAN1):c.136T>C (p.Phe46Leu)
NM_001130438.3(SPTAN1):c.1708G>A (p.Ala570Thr) rs2131129868
NM_001165963.4(SCN1A):c.1727G>A (p.Ser576Asn) rs1697492585
NM_001165963.4(SCN1A):c.5634G>C (p.Glu1878Asp) rs748090629
NM_001184880.2(PCDH19):c.475G>C (p.Gly159Arg)
NM_001205293.3(CACNA1E):c.2603A>G (p.Asp868Gly)
NM_001205293.3(CACNA1E):c.4165C>T (p.Arg1389Ter) rs2102689215
NM_001205293.3(CACNA1E):c.4608C>T (p.Asn1536=) rs2102718155
NM_001205293.3(CACNA1E):c.6581C>G (p.Pro2194Arg)
NM_001271.4(CHD2):c.2689G>A (p.Ala897Thr)
NM_001271.4(CHD2):c.4074G>T (p.Glu1358Asp)
NM_001271.4(CHD2):c.4964C>T (p.Pro1655Leu)
NM_001330260.2(SCN8A):c.3577C>T (p.Leu1193Phe) rs2138871696
NM_001330260.2(SCN8A):c.4877G>A (p.Arg1626His)
NM_001330260.2(SCN8A):c.5087T>G (p.Ile1696Ser)
NM_001365999.1(SZT2):c.5579G>A (p.Gly1860Asp) rs1654050516
NM_001382273.1(TNK2):c.3022C>T (p.Gln1008Ter)
NM_002641.4(PIGA):c.1087A>G (p.Ile363Val)
NM_002641.4(PIGA):c.98A>G (p.His33Arg) rs797044924
NM_003359.4(UGDH):c.311C>T (p.Ala104Val) rs1420419492
NM_004341.5(CAD):c.4231A>G (p.Lys1411Glu)
NM_004341.5(CAD):c.5104C>T (p.Pro1702Ser) rs529298259
NM_004408.4(DNM1):c.2510A>C (p.Asn837Thr)
NM_004974.4(KCNA2):c.329C>T (p.Ser110Phe) rs1649507829
NM_004975.4(KCNB1):c.1801G>A (p.Ala601Thr)
NM_004975.4(KCNB1):c.986A>G (p.Asn329Ser) rs1984257387
NM_006160.4(NEUROD2):c.355T>C (p.Ser119Pro)
NM_006160.4(NEUROD2):c.517C>A (p.Leu173Ile)
NM_006178.4(NSF):c.1590_1592dup (p.Ser531_Asp532insSer) rs2146261671
NM_006180.6(NTRK2):c.1438G>A (p.Gly480Ser)
NM_006306.4(SMC1A):c.1118A>G (p.Lys373Arg) rs2146604633
NM_006586.5(CNPY3):c.592G>A (p.Val198Met)
NM_006922.4(SCN3A):c.4484C>T (p.Ala1495Val)
NM_006922.4(SCN3A):c.4811T>C (p.Met1604Thr) rs1685095084
NM_014905.5(GLS):c.7C>T (p.Arg3Trp)
NM_015047.3(EMC1):c.2048G>A (p.Gly683Glu) rs2151947387
NM_015047.3(EMC1):c.698C>T (p.Ala233Val)
NM_015047.3(EMC1):c.820C>T (p.Pro274Ser)
NM_015178.3(RHOBTB2):c.1216A>G (p.Thr406Ala) rs2128804901
NM_015267.4(CUX2):c.1571C>T (p.Ala524Val)
NM_015267.4(CUX2):c.1945G>A (p.Asp649Asn)
NM_015267.4(CUX2):c.223-1G>A
NM_020822.3(KCNT1):c.2330G>C (p.Cys777Ser)
NM_021072.4(HCN1):c.1139T>A (p.Ile380Asn)
NM_030948.6(PHACTR1):c.1454A>G (p.Asn485Ser) rs2127468177
NM_031844.3(HNRNPU):c.1028A>G (p.Lys343Arg)
NM_031844.3(HNRNPU):c.325G>C (p.Glu109Gln)
NM_031844.3(HNRNPU):c.421G>A (p.Gly141Arg)
NM_033453.4(ITPA):c.*53C>T
NM_152268.4(PARS2):c.874T>C (p.Cys292Arg) rs779085274
NM_172107.4(KCNQ2):c.1787G>C (p.Gly596Ala) rs2145497630
NM_172107.4(KCNQ2):c.856C>G (p.Gln286Glu)
NM_183381.3(RNF13):c.262A>T (p.Asn88Tyr)
NM_198503.5(KCNT2):c.3289G>A (p.Asp1097Asn)
NM_198904.4(GABRG2):c.389G>A (p.Ser130Asn) rs1194428749

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