ClinVar Miner

List of variants reported as likely benign for colorectal cancer, hereditary nonpolyposis, type 7 by Invitae

Included ClinVar conditions (3):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 270
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HGVS dbSNP gnomAD frequency
NM_001040108.2(MLH3):c.2425A>G (p.Met809Val) rs61752722 0.00197
NM_001040108.2(MLH3):c.359T>C (p.Phe120Ser) rs28756979 0.00120
NM_001040108.2(MLH3):c.394G>A (p.Ala132Thr) rs148095325 0.00102
NM_001040108.2(MLH3):c.2670G>A (p.Met890Ile) rs147021156 0.00093
NM_001040108.2(MLH3):c.1234A>G (p.Lys412Glu) rs61754769 0.00061
NM_001040108.2(MLH3):c.902A>T (p.Glu301Val) rs77687901 0.00040
NM_001040108.2(MLH3):c.3344G>A (p.Arg1115Gln) rs78311619 0.00038
NM_001040108.2(MLH3):c.3440A>T (p.Asn1147Ile) rs142124529 0.00035
NM_001040108.2(MLH3):c.1637G>T (p.Arg546Ile) rs55725216 0.00034
NM_001040108.2(MLH3):c.2449A>G (p.Ser817Gly) rs143278116 0.00032
NM_001040108.2(MLH3):c.1168T>A (p.Phe390Ile) rs61752721 0.00030
NM_001040108.2(MLH3):c.2180G>A (p.Ser727Asn) rs116526686 0.00029
NM_001040108.2(MLH3):c.4194T>C (p.Pro1398=) rs1304593902 0.00029
NM_001040108.2(MLH3):c.3563C>G (p.Ser1188Ter) rs193219754 0.00019
NM_001040108.2(MLH3):c.2547T>C (p.Ser849=) rs183078420 0.00018
NM_001040108.2(MLH3):c.713A>C (p.Tyr238Ser) rs144707485 0.00016
NM_001040108.2(MLH3):c.4227G>A (p.Leu1409=) rs779314962 0.00014
NM_001040108.2(MLH3):c.2241G>A (p.Leu747=) rs139155264 0.00012
NM_001040108.2(MLH3):c.3636C>T (p.Gly1212=) rs571755678 0.00010
NM_001040108.2(MLH3):c.729A>G (p.Ala243=) rs367629280 0.00010
NM_001040108.2(MLH3):c.2356G>A (p.Val786Ile) rs372089146 0.00009
NM_001040108.2(MLH3):c.4091-13G>C rs369368840 0.00009
NM_001040108.2(MLH3):c.873T>G (p.Asn291Lys) rs767413852 0.00009
NM_001040108.2(MLH3):c.889C>T (p.Arg297Trp) rs775001669 0.00009
NM_001040108.2(MLH3):c.3280+8C>T rs544870680 0.00007
NM_001040108.2(MLH3):c.3576C>T (p.Leu1192=) rs376981545 0.00007
NM_001040108.2(MLH3):c.1582T>C (p.Trp528Arg) rs761221683 0.00006
NM_001040108.2(MLH3):c.277C>G (p.Arg93Gly) rs28756978 0.00006
NM_001040108.2(MLH3):c.3336G>A (p.Pro1112=) rs762298048 0.00006
NM_001040108.2(MLH3):c.3570+9T>C rs769178899 0.00006
NM_001040108.2(MLH3):c.3716-4A>G rs777308221 0.00006
NM_001040108.2(MLH3):c.441A>G (p.Thr147=) rs777203408 0.00006
NM_001040108.2(MLH3):c.484A>G (p.Met162Val) rs188493164 0.00006
NM_001040108.2(MLH3):c.1569G>A (p.Gln523=) rs552398291 0.00005
NM_001040108.2(MLH3):c.162G>A (p.Val54=) rs757926156 0.00005
NM_001040108.2(MLH3):c.1740G>A (p.Glu580=) rs761803406 0.00005
NM_001040108.2(MLH3):c.2253A>G (p.Leu751=) rs748465953 0.00004
NM_001040108.2(MLH3):c.2493A>G (p.Pro831=) rs1201029113 0.00004
NM_001040108.2(MLH3):c.2964C>G (p.Ile988Met) rs201936675 0.00004
NM_001040108.2(MLH3):c.3280+10T>C rs755892150 0.00004
NM_001040108.2(MLH3):c.3675C>T (p.His1225=) rs147335651 0.00004
NM_001040108.2(MLH3):c.3723C>T (p.Tyr1241=) rs145627040 0.00004
NM_001040108.2(MLH3):c.3827+19A>T rs1340786781 0.00004
NM_001040108.2(MLH3):c.4170A>G (p.Pro1390=) rs192384476 0.00004
NM_001040108.2(MLH3):c.1017C>T (p.Cys339=) rs368126670 0.00003
NM_001040108.2(MLH3):c.2362C>A (p.Pro788Thr) rs758319075 0.00003
NM_001040108.2(MLH3):c.285G>A (p.Glu95=) rs369067732 0.00003
NM_001040108.2(MLH3):c.3405C>T (p.Ser1135=) rs746155226 0.00003
NM_001040108.2(MLH3):c.4026C>T (p.Thr1342=) rs770765370 0.00003
NM_001040108.2(MLH3):c.4155C>T (p.Ser1385=) rs766537456 0.00003
NM_001040108.2(MLH3):c.471A>G (p.Val157=) rs762169466 0.00003
NM_001040108.2(MLH3):c.816A>G (p.Leu272=) rs147608238 0.00003
NM_001040108.2(MLH3):c.184G>A (p.Gly62Arg) rs761501352 0.00002
NM_001040108.2(MLH3):c.2166C>T (p.His722=) rs186533894 0.00002
NM_001040108.2(MLH3):c.2328T>C (p.Asn776=) rs141970415 0.00002
NM_001040108.2(MLH3):c.2562G>A (p.Lys854=) rs778046851 0.00002
NM_001040108.2(MLH3):c.3015A>G (p.Leu1005=) rs765140681 0.00002
NM_001040108.2(MLH3):c.3020A>G (p.Asn1007Ser) rs776639203 0.00002
NM_001040108.2(MLH3):c.3075A>G (p.Glu1025=) rs746151819 0.00002
NM_001040108.2(MLH3):c.3117G>A (p.Thr1039=) rs752980464 0.00002
NM_001040108.2(MLH3):c.3281-8A>G rs376532114 0.00002
NM_001040108.2(MLH3):c.4206G>A (p.Pro1402=) rs772429784 0.00002
NM_001040108.2(MLH3):c.531T>C (p.Ala177=) rs1239346046 0.00002
NM_001040108.2(MLH3):c.861T>C (p.Ser287=) rs201745687 0.00002
NM_001040108.2(MLH3):c.867A>G (p.Gln289=) rs773294144 0.00002
NM_001040108.2(MLH3):c.1002C>T (p.Asp334=) rs764046706 0.00001
NM_001040108.2(MLH3):c.1107T>C (p.Asn369=) rs1892431997 0.00001
NM_001040108.2(MLH3):c.1125T>C (p.Asp375=) rs781394261 0.00001
NM_001040108.2(MLH3):c.1152C>T (p.Ser384=) rs752741447 0.00001
NM_001040108.2(MLH3):c.1257C>T (p.Asn419=) rs1594781328 0.00001
NM_001040108.2(MLH3):c.126T>G (p.Ala42=) rs556487716 0.00001
NM_001040108.2(MLH3):c.1281T>C (p.Asp427=) rs371123260 0.00001
NM_001040108.2(MLH3):c.1761T>C (p.Ser587=) rs763313215 0.00001
NM_001040108.2(MLH3):c.1794T>C (p.Tyr598=) rs139018020 0.00001
NM_001040108.2(MLH3):c.1815C>T (p.Ser605=) rs747865169 0.00001
NM_001040108.2(MLH3):c.1836A>G (p.Val612=) rs1422736890 0.00001
NM_001040108.2(MLH3):c.1899T>C (p.Pro633=) rs145978189 0.00001
NM_001040108.2(MLH3):c.1915C>A (p.Gln639Lys) rs773131251 0.00001
NM_001040108.2(MLH3):c.2031G>A (p.Thr677=) rs761342748 0.00001
NM_001040108.2(MLH3):c.2061T>C (p.Pro687=) rs771380578 0.00001
NM_001040108.2(MLH3):c.2193T>C (p.Asp731=) rs780355853 0.00001
NM_001040108.2(MLH3):c.2331A>T (p.Gly777=) rs375564813 0.00001
NM_001040108.2(MLH3):c.2391C>T (p.Arg797=) rs766063089 0.00001
NM_001040108.2(MLH3):c.240G>A (p.Ser80=) rs766371279 0.00001
NM_001040108.2(MLH3):c.246G>A (p.Gln82=) rs1407041352 0.00001
NM_001040108.2(MLH3):c.2574C>A (p.Leu858=) rs754858362 0.00001
NM_001040108.2(MLH3):c.2604G>A (p.Lys868=) rs763227940 0.00001
NM_001040108.2(MLH3):c.2760T>C (p.Cys920=) rs1255590960 0.00001
NM_001040108.2(MLH3):c.2874T>C (p.Asn958=) rs751843650 0.00001
NM_001040108.2(MLH3):c.2916G>A (p.Leu972=) rs1339430285 0.00001
NM_001040108.2(MLH3):c.2940C>T (p.Thr980=) rs750994816 0.00001
NM_001040108.2(MLH3):c.3024G>A (p.Pro1008=) rs1215489414 0.00001
NM_001040108.2(MLH3):c.3145G>A (p.Asp1049Asn) rs372835460 0.00001
NM_001040108.2(MLH3):c.3280+19T>C rs773682420 0.00001
NM_001040108.2(MLH3):c.3280+9G>A rs766230638 0.00001
NM_001040108.2(MLH3):c.3384T>C (p.Thr1128=) rs370951929 0.00001
NM_001040108.2(MLH3):c.3411G>A (p.Ser1137=) rs746749487 0.00001
NM_001040108.2(MLH3):c.3571-9G>C rs1380288970 0.00001
NM_001040108.2(MLH3):c.3603C>T (p.Ala1201=) rs187392462 0.00001
NM_001040108.2(MLH3):c.3716-10C>T rs374204567 0.00001
NM_001040108.2(MLH3):c.3777A>G (p.Leu1259=) rs150812418 0.00001
NM_001040108.2(MLH3):c.3918A>G (p.Leu1306=) rs773625418 0.00001
NM_001040108.2(MLH3):c.4012-16C>T rs45498895 0.00001
NM_001040108.2(MLH3):c.4056T>C (p.Thr1352=) rs778555314 0.00001
NM_001040108.2(MLH3):c.4185C>T (p.His1395=) rs145575075 0.00001
NM_001040108.2(MLH3):c.45T>G (p.Ser15=) rs1206903146 0.00001
NM_001040108.2(MLH3):c.510G>A (p.Lys170=) rs746983446 0.00001
NM_001040108.2(MLH3):c.565T>C (p.Leu189=) rs757893863 0.00001
NM_001040108.2(MLH3):c.618C>T (p.Asp206=) rs762968546 0.00001
NM_001040108.2(MLH3):c.744T>C (p.Asn248=) rs377173323 0.00001
NM_001040108.2(MLH3):c.807C>T (p.Asp269=) rs779598518 0.00001
NM_001040108.2(MLH3):c.1047G>A (p.Lys349=) rs2139590923
NM_001040108.2(MLH3):c.1077T>C (p.Gly359=) rs2139590456
NM_001040108.2(MLH3):c.1110T>G (p.Gly370=) rs750410588
NM_001040108.2(MLH3):c.1153G>C (p.Asp385His) rs201389281
NM_001040108.2(MLH3):c.1155T>C (p.Asp385=) rs766153014
NM_001040108.2(MLH3):c.1189_1191del (p.Ile397del) rs777369430
NM_001040108.2(MLH3):c.123G>T (p.Val41=)
NM_001040108.2(MLH3):c.1365G>A (p.Glu455=)
NM_001040108.2(MLH3):c.1392T>C (p.Ser464=) rs758511599
NM_001040108.2(MLH3):c.1404A>G (p.Ser468=) rs778624382
NM_001040108.2(MLH3):c.1434A>G (p.Ala478=)
NM_001040108.2(MLH3):c.1458A>G (p.Lys486=) rs2139582999
NM_001040108.2(MLH3):c.1470T>C (p.Ser490=) rs1304359193
NM_001040108.2(MLH3):c.147C>T (p.Thr49=) rs2139612558
NM_001040108.2(MLH3):c.1482T>C (p.His494=) rs200067582
NM_001040108.2(MLH3):c.1494A>G (p.Glu498=) rs2139582159
NM_001040108.2(MLH3):c.1500G>C (p.Pro500=)
NM_001040108.2(MLH3):c.1530C>T (p.Ser510=)
NM_001040108.2(MLH3):c.1563T>C (p.Ser521=)
NM_001040108.2(MLH3):c.1608C>A (p.Gly536=) rs2139579764
NM_001040108.2(MLH3):c.1656G>A (p.Lys552=)
NM_001040108.2(MLH3):c.1671T>C (p.Ala557=) rs1043994086
NM_001040108.2(MLH3):c.1683A>T (p.Gly561=) rs1566606687
NM_001040108.2(MLH3):c.1710A>G (p.Thr570=) rs2139577823
NM_001040108.2(MLH3):c.1728T>C (p.Ser576=)
NM_001040108.2(MLH3):c.1737A>G (p.Thr579=)
NM_001040108.2(MLH3):c.1776A>G (p.Arg592=) rs745659701
NM_001040108.2(MLH3):c.1788T>C (p.Phe596=) rs2139576031
NM_001040108.2(MLH3):c.180G>A (p.Gly60=)
NM_001040108.2(MLH3):c.1875T>C (p.His625=) rs2139574307
NM_001040108.2(MLH3):c.1887T>C (p.Asn629=) rs2139574158
NM_001040108.2(MLH3):c.1908A>G (p.Thr636=) rs2139573767
NM_001040108.2(MLH3):c.1926T>C (p.Phe642=) rs1319967873
NM_001040108.2(MLH3):c.1956T>C (p.Thr652=) rs1892348356
NM_001040108.2(MLH3):c.1959A>G (p.Pro653=)
NM_001040108.2(MLH3):c.1980C>T (p.Ser660=) rs758562185
NM_001040108.2(MLH3):c.1983T>G (p.Thr661=) rs376024613
NM_001040108.2(MLH3):c.1998T>C (p.Ser666=)
NM_001040108.2(MLH3):c.2028A>G (p.Arg676=) rs920388892
NM_001040108.2(MLH3):c.2076A>C (p.Thr692=) rs1892338323
NM_001040108.2(MLH3):c.2130A>G (p.Leu710=)
NM_001040108.2(MLH3):c.2139A>G (p.Thr713=) rs2139569080
NM_001040108.2(MLH3):c.219T>C (p.Tyr73=) rs1285126988
NM_001040108.2(MLH3):c.2220C>A (p.Ile740=)
NM_001040108.2(MLH3):c.2220C>T (p.Ile740=)
NM_001040108.2(MLH3):c.2277G>A (p.Arg759=)
NM_001040108.2(MLH3):c.2403T>G (p.Ser801=)
NM_001040108.2(MLH3):c.2415A>G (p.Lys805=)
NM_001040108.2(MLH3):c.2433T>C (p.His811=)
NM_001040108.2(MLH3):c.2475_2476delinsGG (p.Asn826Asp) rs2139561968
NM_001040108.2(MLH3):c.2481A>G (p.Ser827=) rs778936478
NM_001040108.2(MLH3):c.2640G>A (p.Leu880=)
NM_001040108.2(MLH3):c.2643G>A (p.Lys881=) rs760753507
NM_001040108.2(MLH3):c.2646T>C (p.Gly882=)
NM_001040108.2(MLH3):c.2673G>A (p.Gly891=)
NM_001040108.2(MLH3):c.2673G>T (p.Gly891=)
NM_001040108.2(MLH3):c.2778G>A (p.Lys926=)
NM_001040108.2(MLH3):c.2826A>G (p.Thr942=)
NM_001040108.2(MLH3):c.2937T>C (p.Val979=)
NM_001040108.2(MLH3):c.2964C>T (p.Ile988=)
NM_001040108.2(MLH3):c.3009A>G (p.Gly1003=) rs2139550261
NM_001040108.2(MLH3):c.3021T>C (p.Asn1007=) rs1360064914
NM_001040108.2(MLH3):c.3069T>C (p.Ser1023=)
NM_001040108.2(MLH3):c.3084A>C (p.Ala1028=)
NM_001040108.2(MLH3):c.3087A>G (p.Arg1029=) rs1555344899
NM_001040108.2(MLH3):c.3198A>G (p.Thr1066=) rs1402014356
NM_001040108.2(MLH3):c.3219C>T (p.Asp1073=)
NM_001040108.2(MLH3):c.3246G>C (p.Leu1082=)
NM_001040108.2(MLH3):c.3249A>G (p.Thr1083=)
NM_001040108.2(MLH3):c.3280+14A>G
NM_001040108.2(MLH3):c.3280+20G>A rs2139543149
NM_001040108.2(MLH3):c.3281-7T>C
NM_001040108.2(MLH3):c.3281-8A>T rs376532114
NM_001040108.2(MLH3):c.3300A>G (p.Gln1100=)
NM_001040108.2(MLH3):c.3306T>C (p.Phe1102=)
NM_001040108.2(MLH3):c.3379+20C>G
NM_001040108.2(MLH3):c.3380-10T>A rs2139496713
NM_001040108.2(MLH3):c.3380-12C>T
NM_001040108.2(MLH3):c.3380-17G>A
NM_001040108.2(MLH3):c.3396T>C (p.Thr1132=)
NM_001040108.2(MLH3):c.3399T>C (p.Val1133=)
NM_001040108.2(MLH3):c.3423G>A (p.Leu1141=) rs2139494058
NM_001040108.2(MLH3):c.3444A>G (p.Pro1148=)
NM_001040108.2(MLH3):c.3450T>C (p.Phe1150=)
NM_001040108.2(MLH3):c.3465+9G>A
NM_001040108.2(MLH3):c.3498G>A (p.Glu1166=)
NM_001040108.2(MLH3):c.3528G>A (p.Leu1176=) rs1051361984
NM_001040108.2(MLH3):c.3571-15T>C
NM_001040108.2(MLH3):c.3571-9G>A
NM_001040108.2(MLH3):c.3585A>C (p.Val1195=) rs1595065923
NM_001040108.2(MLH3):c.3639G>A (p.Glu1213=) rs1215630711
NM_001040108.2(MLH3):c.3643+10G>A rs1231755836
NM_001040108.2(MLH3):c.3643+16A>G
NM_001040108.2(MLH3):c.3643+6_3643+12del rs2139454483
NM_001040108.2(MLH3):c.3644-16A>G
NM_001040108.2(MLH3):c.3644-20C>T
NM_001040108.2(MLH3):c.3644-5T>C rs2139413400
NM_001040108.2(MLH3):c.3644-6A>G rs776538240
NM_001040108.2(MLH3):c.3644-7C>T
NM_001040108.2(MLH3):c.3654G>A (p.Leu1218=) rs2139413262
NM_001040108.2(MLH3):c.3657C>T (p.Leu1219=)
NM_001040108.2(MLH3):c.3678T>G (p.Ala1226=)
NM_001040108.2(MLH3):c.3681C>T (p.Ala1227=)
NM_001040108.2(MLH3):c.3687G>A (p.Glu1229=)
NM_001040108.2(MLH3):c.3715+10T>C
NM_001040108.2(MLH3):c.3715+16C>T
NM_001040108.2(MLH3):c.3715+18G>A
NM_001040108.2(MLH3):c.3715+8T>A rs2139412218
NM_001040108.2(MLH3):c.3716-16A>G
NM_001040108.2(MLH3):c.3726G>A (p.Glu1242=)
NM_001040108.2(MLH3):c.3759A>G (p.Lys1253=) rs779804105
NM_001040108.2(MLH3):c.3786G>A (p.Pro1262=) rs28757027
NM_001040108.2(MLH3):c.3827+9del rs2139400494
NM_001040108.2(MLH3):c.388C>T (p.Leu130=)
NM_001040108.2(MLH3):c.3909A>G (p.Lys1303=)
NM_001040108.2(MLH3):c.3951G>T (p.Arg1317=) rs1228068239
NM_001040108.2(MLH3):c.3960A>G (p.Arg1320=)
NM_001040108.2(MLH3):c.3966T>C (p.Thr1322=)
NM_001040108.2(MLH3):c.3988-14C>G rs2139329191
NM_001040108.2(MLH3):c.39G>A (p.Leu13=) rs1594784114
NM_001040108.2(MLH3):c.4011+10T>C
NM_001040108.2(MLH3):c.4012-15G>A
NM_001040108.2(MLH3):c.4012-18A>G rs1330240884
NM_001040108.2(MLH3):c.402A>G (p.Glu134=) rs545763648
NM_001040108.2(MLH3):c.4074A>C (p.Ala1358=) rs1555387475
NM_001040108.2(MLH3):c.4090+10del rs1198596878
NM_001040108.2(MLH3):c.4090+18G>A
NM_001040108.2(MLH3):c.4090+7C>G
NM_001040108.2(MLH3):c.4091-13_4091-10del
NM_001040108.2(MLH3):c.4092G>A (p.Gly1364=) rs1555386745
NM_001040108.2(MLH3):c.4107T>C (p.Asn1369=) rs1595024075
NM_001040108.2(MLH3):c.414T>G (p.Thr138=)
NM_001040108.2(MLH3):c.4239A>G (p.Lys1413=) rs975447813
NM_001040108.2(MLH3):c.4242+14dup rs2139295563
NM_001040108.2(MLH3):c.4243-10C>A
NM_001040108.2(MLH3):c.4243-15T>G
NM_001040108.2(MLH3):c.4243-16T>C
NM_001040108.2(MLH3):c.4251C>T (p.Pro1417=)
NM_001040108.2(MLH3):c.4293C>G (p.Leu1431=)
NM_001040108.2(MLH3):c.4326C>T (p.Ser1442=) rs1377285175
NM_001040108.2(MLH3):c.4329G>A (p.Leu1443=)
NM_001040108.2(MLH3):c.4347C>T (p.Pro1449=) rs2139282721
NM_001040108.2(MLH3):c.471A>C (p.Val157=)
NM_001040108.2(MLH3):c.496C>T (p.Leu166=)
NM_001040108.2(MLH3):c.540C>T (p.Leu180=) rs1041937445
NM_001040108.2(MLH3):c.546C>T (p.His182=)
NM_001040108.2(MLH3):c.564T>G (p.Ser188=) rs2139603362
NM_001040108.2(MLH3):c.585T>G (p.Gly195=) rs778567041
NM_001040108.2(MLH3):c.603C>T (p.Leu201=)
NM_001040108.2(MLH3):c.60C>T (p.Ser20=)
NM_001040108.2(MLH3):c.711C>T (p.Gly237=)
NM_001040108.2(MLH3):c.774A>G (p.Leu258=) rs2139599520
NM_001040108.2(MLH3):c.825A>G (p.Glu275=) rs1040135404
NM_001040108.2(MLH3):c.843A>G (p.Pro281=)
NM_001040108.2(MLH3):c.849T>C (p.Asn283=) rs376836787
NM_001040108.2(MLH3):c.858C>A (p.Thr286=) rs2139597118
NM_001040108.2(MLH3):c.885G>A (p.Arg295=)
NM_001040108.2(MLH3):c.948G>A (p.Glu316=) rs750723376
NM_001040108.2(MLH3):c.96C>T (p.Asn32=) rs2139613729

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