ClinVar Miner

List of variants in gene RAB3GAP2 reported as likely benign for multiple congenital anomalies/dysmorphic syndrome-intellectual disability

Included ClinVar conditions (406):
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 216
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HGVS dbSNP gnomAD frequency
NM_012414.4(RAB3GAP2):c.*2327A>G rs139079455 0.00513
NM_012414.4(RAB3GAP2):c.961-14G>T rs148886986 0.00475
NM_012414.4(RAB3GAP2):c.*2638C>T rs74139286 0.00455
NM_012414.4(RAB3GAP2):c.*2464T>C rs111341601 0.00444
NM_012414.4(RAB3GAP2):c.*2399A>G rs115637988 0.00369
NM_012414.4(RAB3GAP2):c.*1404T>C rs188666578 0.00355
NM_012414.4(RAB3GAP2):c.*1271C>T rs193019999 0.00318
NM_012414.4(RAB3GAP2):c.*1527G>C rs185153185 0.00255
NM_012414.4(RAB3GAP2):c.3966A>G (p.Lys1322=) rs150226729 0.00206
NM_012414.4(RAB3GAP2):c.4060A>G (p.Ile1354Val) rs59190330 0.00174
NM_012414.4(RAB3GAP2):c.*645C>T rs188031183 0.00158
NM_012414.4(RAB3GAP2):c.39C>T (p.Asp13=) rs145667920 0.00149
NM_012414.4(RAB3GAP2):c.938C>T (p.Thr313Ile) rs74139292 0.00104
NM_012414.4(RAB3GAP2):c.112C>T (p.Pro38Ser) rs138796052 0.00102
NM_012414.4(RAB3GAP2):c.2290C>T (p.Leu764Phe) rs139337049 0.00097
NM_012414.4(RAB3GAP2):c.3842A>G (p.Tyr1281Cys) rs34081806 0.00094
NM_012414.4(RAB3GAP2):c.1632-16A>G rs191799009 0.00058
NM_012414.4(RAB3GAP2):c.3525C>T (p.Thr1175=) rs145701892 0.00056
NM_012414.4(RAB3GAP2):c.3991C>A (p.Leu1331Ile) rs149842844 0.00050
NM_012414.4(RAB3GAP2):c.2295C>T (p.Ser765=) rs143994202 0.00049
NM_012414.4(RAB3GAP2):c.173A>C (p.Gln58Pro) rs111859466 0.00047
NM_012414.4(RAB3GAP2):c.3390G>A (p.Ala1130=) rs140377995 0.00045
NM_012414.4(RAB3GAP2):c.2168T>A (p.Val723Glu) rs150643803 0.00044
NM_012414.4(RAB3GAP2):c.3702C>T (p.Val1234=) rs137897304 0.00041
NM_012414.4(RAB3GAP2):c.2807-15G>A rs200407685 0.00038
NM_012414.4(RAB3GAP2):c.2667T>G (p.Leu889=) rs145550355 0.00021
NM_012414.4(RAB3GAP2):c.3337-6C>T rs137894782 0.00020
NM_012414.4(RAB3GAP2):c.3616G>T (p.Asp1206Tyr) rs139407102 0.00016
NM_012414.4(RAB3GAP2):c.2304G>A (p.Leu768=) rs140146408 0.00014
NM_012414.4(RAB3GAP2):c.2212+15A>T rs375627012 0.00013
NM_012414.4(RAB3GAP2):c.3143A>G (p.His1048Arg) rs151244742 0.00013
NM_012414.4(RAB3GAP2):c.812-6T>A rs575925720 0.00013
NM_012414.4(RAB3GAP2):c.465C>T (p.Cys155=) rs144263040 0.00012
NM_012414.4(RAB3GAP2):c.960+13T>G rs202020014 0.00011
NM_012414.4(RAB3GAP2):c.1215C>T (p.Phe405=) rs762485949 0.00009
NM_012414.4(RAB3GAP2):c.1406C>T (p.Ala469Val) rs151225064 0.00008
NM_012414.4(RAB3GAP2):c.2940T>A (p.Leu980=) rs373793377 0.00008
NM_012414.4(RAB3GAP2):c.2282C>T (p.Ser761Leu) rs562096116 0.00006
NM_012414.4(RAB3GAP2):c.597C>T (p.Pro199=) rs371029254 0.00006
NM_012414.4(RAB3GAP2):c.1281C>T (p.Asp427=) rs372594666 0.00005
NM_012414.4(RAB3GAP2):c.1407G>A (p.Ala469=) rs375443204 0.00004
NM_012414.4(RAB3GAP2):c.2981-7C>T rs750436297 0.00004
NM_012414.4(RAB3GAP2):c.3336+10G>T rs771074307 0.00004
NM_012414.4(RAB3GAP2):c.4161C>T (p.Ala1387=) rs772430156 0.00004
NM_012414.4(RAB3GAP2):c.1131-4T>C rs752780415 0.00003
NM_012414.4(RAB3GAP2):c.1608C>T (p.Asn536=) rs756886302 0.00003
NM_012414.4(RAB3GAP2):c.3648C>T (p.Phe1216=) rs745868602 0.00003
NM_012414.4(RAB3GAP2):c.4027-5T>C rs779800010 0.00003
NM_012414.4(RAB3GAP2):c.960+14C>T rs752258077 0.00003
NM_012414.4(RAB3GAP2):c.1041-19_1041-18del rs746233410 0.00002
NM_012414.4(RAB3GAP2):c.115+11C>G rs375507434 0.00002
NM_012414.4(RAB3GAP2):c.2401C>T (p.Leu801=) rs773701395 0.00002
NM_012414.4(RAB3GAP2):c.3294T>C (p.Ser1098=) rs368788359 0.00002
NM_012414.4(RAB3GAP2):c.3996A>G (p.Pro1332=) rs768393894 0.00002
NM_012414.4(RAB3GAP2):c.540G>A (p.Leu180=) rs751363013 0.00002
NM_012414.4(RAB3GAP2):c.*572G>T rs540128548 0.00001
NM_012414.4(RAB3GAP2):c.108G>A (p.Arg36=) rs765320215 0.00001
NM_012414.4(RAB3GAP2):c.2367G>A (p.Gln789=) rs752461001 0.00001
NM_012414.4(RAB3GAP2):c.2417-7C>T rs973067244 0.00001
NM_012414.4(RAB3GAP2):c.2538T>G (p.Ser846=) rs368216093 0.00001
NM_012414.4(RAB3GAP2):c.3336+15T>C rs373879791 0.00001
NM_012414.4(RAB3GAP2):c.3453C>T (p.His1151=) rs1300023412 0.00001
NM_012414.4(RAB3GAP2):c.3868-8A>G rs886046018 0.00001
NM_012414.4(RAB3GAP2):c.4026+10A>G rs746827542 0.00001
NM_012414.4(RAB3GAP2):c.504C>T (p.Tyr168=) rs778754576 0.00001
NM_012414.4(RAB3GAP2):c.511-7C>T rs748684063 0.00001
NM_012414.4(RAB3GAP2):c.516T>C (p.Gly172=) rs568628754 0.00001
NM_012414.4(RAB3GAP2):c.*1694_*1695insACA rs143194915
NM_012414.4(RAB3GAP2):c.*2512dup rs143756119
NM_012414.4(RAB3GAP2):c.1038C>A (p.Ala346=)
NM_012414.4(RAB3GAP2):c.1040+7A>T
NM_012414.4(RAB3GAP2):c.1059A>G (p.Lys353=) rs371000771
NM_012414.4(RAB3GAP2):c.1083C>A (p.Val361=) rs2102871802
NM_012414.4(RAB3GAP2):c.1125T>C (p.Ala375=)
NM_012414.4(RAB3GAP2):c.1131-7A>C
NM_012414.4(RAB3GAP2):c.115+12T>C
NM_012414.4(RAB3GAP2):c.116-15T>C
NM_012414.4(RAB3GAP2):c.1194G>A (p.Leu398=)
NM_012414.4(RAB3GAP2):c.1272G>A (p.Gly424=)
NM_012414.4(RAB3GAP2):c.1275C>T (p.Tyr425=)
NM_012414.4(RAB3GAP2):c.1278C>T (p.Arg426=)
NM_012414.4(RAB3GAP2):c.1344T>C (p.Asp448=)
NM_012414.4(RAB3GAP2):c.1347T>C (p.Phe449=)
NM_012414.4(RAB3GAP2):c.1378C>A (p.Arg460=)
NM_012414.4(RAB3GAP2):c.1431G>A (p.Val477=)
NM_012414.4(RAB3GAP2):c.1446G>A (p.Gln482=)
NM_012414.4(RAB3GAP2):c.1487+14G>A rs1658608277
NM_012414.4(RAB3GAP2):c.1488-14T>C
NM_012414.4(RAB3GAP2):c.1488-15A>G
NM_012414.4(RAB3GAP2):c.1584G>T (p.Val528=) rs372216761
NM_012414.4(RAB3GAP2):c.1631+10G>A
NM_012414.4(RAB3GAP2):c.1631+16T>C
NM_012414.4(RAB3GAP2):c.1715-16del
NM_012414.4(RAB3GAP2):c.1715-20_1715-17del
NM_012414.4(RAB3GAP2):c.1761C>T (p.Tyr587=)
NM_012414.4(RAB3GAP2):c.1779+11A>G
NM_012414.4(RAB3GAP2):c.1779+16A>T
NM_012414.4(RAB3GAP2):c.1779+19C>T
NM_012414.4(RAB3GAP2):c.180+18T>C
NM_012414.4(RAB3GAP2):c.1870+8G>C
NM_012414.4(RAB3GAP2):c.1871-9G>A rs1358973733
NM_012414.4(RAB3GAP2):c.1884T>C (p.Val628=)
NM_012414.4(RAB3GAP2):c.1927C>T (p.Leu643=)
NM_012414.4(RAB3GAP2):c.1929G>A (p.Leu643=) rs1392025960
NM_012414.4(RAB3GAP2):c.1995T>C (p.Asp665=)
NM_012414.4(RAB3GAP2):c.1999-26GTTTT[2] rs764326258
NM_012414.4(RAB3GAP2):c.2212+16C>T
NM_012414.4(RAB3GAP2):c.2212+18C>A
NM_012414.4(RAB3GAP2):c.2253C>T (p.Ser751=)
NM_012414.4(RAB3GAP2):c.2256T>C (p.Thr752=)
NM_012414.4(RAB3GAP2):c.2283G>A (p.Ser761=)
NM_012414.4(RAB3GAP2):c.2311-19del
NM_012414.4(RAB3GAP2):c.2403G>A (p.Leu801=) rs1571881674
NM_012414.4(RAB3GAP2):c.2416+18C>G
NM_012414.4(RAB3GAP2):c.2416+8_2416+9del rs769425345
NM_012414.4(RAB3GAP2):c.2424C>T (p.Ile808=)
NM_012414.4(RAB3GAP2):c.24C>T (p.Phe8=)
NM_012414.4(RAB3GAP2):c.2508C>T (p.Ala836=)
NM_012414.4(RAB3GAP2):c.2523G>A (p.Ala841=)
NM_012414.4(RAB3GAP2):c.2532G>T (p.Gly844=)
NM_012414.4(RAB3GAP2):c.2562C>T (p.Asn854=)
NM_012414.4(RAB3GAP2):c.2721G>A (p.Gly907=)
NM_012414.4(RAB3GAP2):c.2751G>T (p.Leu917=)
NM_012414.4(RAB3GAP2):c.2807-4A>G
NM_012414.4(RAB3GAP2):c.2832G>A (p.Lys944=)
NM_012414.4(RAB3GAP2):c.2866T>C (p.Leu956=)
NM_012414.4(RAB3GAP2):c.2922T>A (p.Gly974=) rs1437597491
NM_012414.4(RAB3GAP2):c.2946A>G (p.Val982=)
NM_012414.4(RAB3GAP2):c.2980+7C>T
NM_012414.4(RAB3GAP2):c.2981-9_2981-6del rs766834201
NM_012414.4(RAB3GAP2):c.2986C>T (p.Leu996=)
NM_012414.4(RAB3GAP2):c.2988G>A (p.Leu996=) rs2102857054
NM_012414.4(RAB3GAP2):c.3012T>C (p.Pro1004=)
NM_012414.4(RAB3GAP2):c.304+12A>G rs530311696
NM_012414.4(RAB3GAP2):c.304+15A>G
NM_012414.4(RAB3GAP2):c.304+19T>G
NM_012414.4(RAB3GAP2):c.305-16A>T
NM_012414.4(RAB3GAP2):c.305-24_305-20del rs770097677
NM_012414.4(RAB3GAP2):c.305-6T>A
NM_012414.4(RAB3GAP2):c.3060C>T (p.Tyr1020=)
NM_012414.4(RAB3GAP2):c.3087+11C>T
NM_012414.4(RAB3GAP2):c.3087+12G>A
NM_012414.4(RAB3GAP2):c.3088-16T>C
NM_012414.4(RAB3GAP2):c.3088-5G>A
NM_012414.4(RAB3GAP2):c.3088-9G>A
NM_012414.4(RAB3GAP2):c.3141A>G (p.Ala1047=)
NM_012414.4(RAB3GAP2):c.3144T>C (p.His1048=)
NM_012414.4(RAB3GAP2):c.3147T>G (p.Val1049=)
NM_012414.4(RAB3GAP2):c.3154+15G>C
NM_012414.4(RAB3GAP2):c.3155-14T>C
NM_012414.4(RAB3GAP2):c.3155-8C>T
NM_012414.4(RAB3GAP2):c.3156C>T (p.Gly1052=)
NM_012414.4(RAB3GAP2):c.3180G>A (p.Thr1060=) rs765738431
NM_012414.4(RAB3GAP2):c.3186A>G (p.Leu1062=)
NM_012414.4(RAB3GAP2):c.3198T>C (p.Phe1066=)
NM_012414.4(RAB3GAP2):c.3226-12T>G
NM_012414.4(RAB3GAP2):c.3226-17T>C
NM_012414.4(RAB3GAP2):c.3240A>G (p.Pro1080=) rs1289153615
NM_012414.4(RAB3GAP2):c.3291A>T (p.Thr1097=) rs1411747717
NM_012414.4(RAB3GAP2):c.3297C>T (p.Phe1099=)
NM_012414.4(RAB3GAP2):c.3321T>C (p.Leu1107=)
NM_012414.4(RAB3GAP2):c.3336+9G>C
NM_012414.4(RAB3GAP2):c.3337-8A>C
NM_012414.4(RAB3GAP2):c.3396C>T (p.Leu1132=)
NM_012414.4(RAB3GAP2):c.3399C>T (p.Ser1133=)
NM_012414.4(RAB3GAP2):c.3400G>C (p.Val1134Leu) rs138489010
NM_012414.4(RAB3GAP2):c.3427C>T (p.Leu1143=)
NM_012414.4(RAB3GAP2):c.3471C>T (p.His1157=) rs200552845
NM_012414.4(RAB3GAP2):c.3555+16del
NM_012414.4(RAB3GAP2):c.3556-8_3556-5del rs1289721687
NM_012414.4(RAB3GAP2):c.3558A>G (p.Gly1186=)
NM_012414.4(RAB3GAP2):c.3646-21_3646-18del
NM_012414.4(RAB3GAP2):c.3690A>G (p.Ser1230=) rs1161462546
NM_012414.4(RAB3GAP2):c.3693C>T (p.Ala1231=)
NM_012414.4(RAB3GAP2):c.372A>G (p.Leu124=) rs2102881432
NM_012414.4(RAB3GAP2):c.3744A>G (p.Lys1248=)
NM_012414.4(RAB3GAP2):c.3867+10A>G
NM_012414.4(RAB3GAP2):c.3868-18C>T
NM_012414.4(RAB3GAP2):c.387-18T>A
NM_012414.4(RAB3GAP2):c.3876A>G (p.Leu1292=)
NM_012414.4(RAB3GAP2):c.3942T>C (p.His1314=)
NM_012414.4(RAB3GAP2):c.3945G>A (p.Ala1315=)
NM_012414.4(RAB3GAP2):c.4026+12A>G
NM_012414.4(RAB3GAP2):c.4026+13G>A rs771446188
NM_012414.4(RAB3GAP2):c.4026+19G>C
NM_012414.4(RAB3GAP2):c.4026+7A>G
NM_012414.4(RAB3GAP2):c.4027-15G>C
NM_012414.4(RAB3GAP2):c.4038C>T (p.Asp1346=)
NM_012414.4(RAB3GAP2):c.4059A>C (p.Pro1353=)
NM_012414.4(RAB3GAP2):c.408A>G (p.Leu136=)
NM_012414.4(RAB3GAP2):c.4113A>G (p.Lys1371=)
NM_012414.4(RAB3GAP2):c.4119G>A (p.Gly1373=) rs763962470
NM_012414.4(RAB3GAP2):c.4164A>C (p.Ile1388=)
NM_012414.4(RAB3GAP2):c.4179A>G (p.Leu1393=)
NM_012414.4(RAB3GAP2):c.435-15T>C
NM_012414.4(RAB3GAP2):c.462C>A (p.Thr154=)
NM_012414.4(RAB3GAP2):c.510+17A>G
NM_012414.4(RAB3GAP2):c.511-18_511-17insCCTCTTGTTTCCTCTGTGCTTC rs747465884
NM_012414.4(RAB3GAP2):c.546G>A (p.Glu182=)
NM_012414.4(RAB3GAP2):c.600C>T (p.Gly200=)
NM_012414.4(RAB3GAP2):c.613-17T>C
NM_012414.4(RAB3GAP2):c.613-20T>G
NM_012414.4(RAB3GAP2):c.613-6A>T
NM_012414.4(RAB3GAP2):c.712+18A>T
NM_012414.4(RAB3GAP2):c.72C>T (p.His24=)
NM_012414.4(RAB3GAP2):c.747A>C (p.Pro249=) rs780485524
NM_012414.4(RAB3GAP2):c.76C>A (p.Arg26=)
NM_012414.4(RAB3GAP2):c.811+17C>T
NM_012414.4(RAB3GAP2):c.873T>C (p.Asn291=) rs1463280020
NM_012414.4(RAB3GAP2):c.927C>A (p.Ser309=) rs1397365740
NM_012414.4(RAB3GAP2):c.927C>T (p.Ser309=)
NM_012414.4(RAB3GAP2):c.933A>G (p.Pro311=)
NM_012414.4(RAB3GAP2):c.960+16A>G
NM_012414.4(RAB3GAP2):c.960+17T>C
NM_012414.4(RAB3GAP2):c.972A>G (p.Gln324=)
NM_012414.4(RAB3GAP2):c.984C>T (p.Ser328=) rs1234105204

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