List of variants reported as likely benign for PTEN hamartoma tumor syndrome by Clingen PTEN Variant Curation Expert Panel, Clingen

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Total variants: 30

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HGVS	dbSNP	gnomAD frequency
NM_001126049.2(KLLN):c.-956G>T	rs34149102	0.00683
NM_001126049.2(KLLN):c.-898G>A	rs538728843	0.00262
NM_000314.8(PTEN):c.132C>T (p.Gly44=)	rs150651961	0.00168
NM_000314.8(PTEN):c.1104T>C (p.Asp368=)	rs35979531	0.00158
NM_000314.8(PTEN):c.801+23G>A	rs116160352	0.00091
NM_001126049.2(KLLN):c.-840G>A	rs563841270	0.00036
NM_000314.8(PTEN):c.882T>G (p.Ser294Arg)	rs143335584	0.00029
NM_000314.6(PTEN):c.-909T>C	rs550385924	0.00013
NM_000314.8(PTEN):c.235G>A (p.Ala79Thr)	rs202004587	0.00011
NM_000314.8(PTEN):c.254-39G>T	rs35034871	0.00011
NM_000314.8(PTEN):c.579G>A (p.Leu193=)	rs568851024	0.00010
NM_000314.8(PTEN):c.892C>G (p.Gln298Glu)	rs371387815	0.00009
NM_000314.8(PTEN):c.720C>T (p.Tyr240=)	rs190070312	0.00006
NM_000314.8(PTEN):c.-837C>T	rs786204940	0.00005
NM_000314.8(PTEN):c.1061C>A (p.Pro354Gln)	rs375709098	0.00003
NM_000314.8(PTEN):c.1078A>G (p.Ser360Gly)	rs587781273	0.00002
NM_000314.8(PTEN):c.360A>C (p.Ala120=)	rs759485888	0.00001
NM_000314.8(PTEN):c.693C>T (p.Pro231=)	rs1064795327	0.00001
NM_000314.8(PTEN):c.75G>A (p.Leu25=)	rs786201506	0.00001
NM_000314.8(PTEN):c.79+7A>G	rs374331677	0.00001
NM_000314.8(PTEN):c.-735G>A	rs886047384
NM_000314.8(PTEN):c.165-24TTTG[2]	rs786204877
NM_000314.8(PTEN):c.18A>G (p.Lys6=)	rs876660391
NM_000314.8(PTEN):c.253+4_253+7del	rs876659695
NM_000314.8(PTEN):c.577C>T (p.Leu193=)	rs772631069
NM_000314.8(PTEN):c.651C>T (p.Val217=)	rs886038278
NM_001126049.2(KLLN):c.-1007C>G	rs587780001
NM_001126049.2(KLLN):c.-1007C>T	rs587780001
NM_001126049.2(KLLN):c.-794_-783del	rs587781340
NM_001126049.2(KLLN):c.-812G>A	rs587779981

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