ClinVar Miner

List of variants studied for multiple congenital anomalies/dysmorphic syndrome by Division of Human Genetics, National Health Laboratory Service/University of the Witwatersrand

Included ClinVar conditions (856):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 54
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HGVS dbSNP gnomAD frequency
NM_002834.5(PTPN11):c.188A>G (p.Tyr63Cys) rs121918459 0.00001
NM_002834.5(PTPN11):c.922A>G (p.Asn308Asp) rs28933386 0.00001
NM_006767.4(LZTR1):c.848G>A (p.Arg283Gln) rs1223430276 0.00001
NM_007373.4(SHOC2):c.4A>G (p.Ser2Gly) rs267607048 0.00001
NM_000214.3(JAG1):c.2406del (p.Trp803fs)
NM_001371623.1(TCOF1):c.158G>A (p.Trp53Ter)
NM_001371623.1(TCOF1):c.3183G>C (p.Gln1061His)
NM_001371623.1(TCOF1):c.3711del (p.Ala1238fs) rs2151060309
NM_001371623.1(TCOF1):c.3754del (p.Gln1252fs)
NM_001371623.1(TCOF1):c.4372_4376del (p.Lys1458fs) rs587776582
NM_002397.5(MEF2C):c.565C>T (p.Arg189Ter) rs587783747
NM_002470.4(MYH3):c.2096T>A (p.Val699Asp)
NM_002524.5(NRAS):c.173C>T (p.Thr58Ile) rs2101742052
NM_002834.5(PTPN11):c.1381G>A (p.Ala461Thr) rs121918468
NM_002834.5(PTPN11):c.1510A>G (p.Met504Val) rs397507547
NM_002834.5(PTPN11):c.182A>G (p.Asp61Gly) rs121918461
NM_002834.5(PTPN11):c.211T>C (p.Phe71Leu) rs397507512
NM_002834.5(PTPN11):c.215C>G (p.Ala72Gly) rs121918454
NM_002834.5(PTPN11):c.228G>T (p.Glu76Asp) rs397507514
NM_002834.5(PTPN11):c.923A>G (p.Asn308Ser) rs121918455
NM_002880.4(RAF1):c.770C>T (p.Ser257Leu) rs80338796
NM_002880.4(RAF1):c.781C>A (p.Pro261Thr) rs121434594
NM_004333.6(BRAF):c.1502A>T (p.Glu501Val) rs180177039
NM_004333.6(BRAF):c.1741A>G (p.Asn581Asp) rs180177040
NM_004333.6(BRAF):c.722C>T (p.Thr241Met) rs387906660
NM_004333.6(BRAF):c.736G>C (p.Ala246Pro) rs180177034
NM_004333.6(BRAF):c.770A>G (p.Gln257Arg) rs180177035
NM_004629.2(FANCG):c.179del (p.Leu60fs) rs1829130643
NM_004629.2(FANCG):c.637_643del (p.Tyr213fs) rs587776640
NM_005633.4(SOS1):c.1649T>C (p.Leu550Pro) rs397517153
NM_005633.4(SOS1):c.806T>C (p.Met269Thr) rs137852813
NM_006767.4(LZTR1):c.690C>G (p.Asn230Lys)
NM_006767.4(LZTR1):c.730T>C (p.Ser244Pro) rs1601718760
NM_006941.4(SOX10):c.400C>T (p.Leu134Phe)
NM_015972.4(POLR1D):c.261del (p.Gly88fs) rs2138519077
NM_017780.4(CHD7):c.1931del (p.Lys644fs) rs2150669764
NM_017780.4(CHD7):c.232C>T (p.Gln78Ter) rs2150577671
NM_017780.4(CHD7):c.2544del (p.Asp849fs)
NM_017780.4(CHD7):c.3309_3310del (p.Val1103_Ile1104insTer) rs2150752540
NM_017780.4(CHD7):c.5894+1G>T
NM_017780.4(CHD7):c.643C>T (p.Gln215Ter) rs2150578812
NM_022455.5(NSD1):c.4823dup (p.Pro1609fs)
NM_022455.5(NSD1):c.4913A>G (p.His1638Arg)
NM_030662.4(MAP2K2):c.169T>G (p.Phe57Val) rs121434498
NM_133433.4(NIPBL):c.2479_2480del (p.Arg827fs) rs398124465
NM_133433.4(NIPBL):c.302_311del (p.Ala101fs) rs2149602979
NM_133433.4(NIPBL):c.3932G>A (p.Cys1311Tyr) rs2149676839
NM_133433.4(NIPBL):c.5465A>G (p.Asp1822Gly) rs587783977
NM_133433.4(NIPBL):c.5639_5642del (p.Pro1880fs) rs2149702380
NM_133433.4(NIPBL):c.6027_6030del (p.Leu2009fs) rs2149721417
NM_133433.4(NIPBL):c.6955-2A>C rs2149741447
NM_133433.4(NIPBL):c.7834dup (p.Arg2612fs) rs2149755630
NM_133433.4:c.1480_2479del
NM_181458.4(PAX3):c.602C>A (p.Ser201Ter)

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