ClinVar Miner

List of variants in gene LGI1 reported as uncertain significance for adolescent-onset epilepsy syndrome

Included ClinVar conditions (69):
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 194
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HGVS dbSNP gnomAD frequency
NM_005097.4(LGI1):c.345A>G (p.Pro115=) rs151104648 0.00113
NM_005097.4(LGI1):c.*180G>A rs544656851 0.00103
NM_005097.4(LGI1):c.-168G>A rs879390887 0.00081
NM_005097.4(LGI1):c.1A>G (p.Met1Val) rs202204627 0.00080
NM_005097.4(LGI1):c.717A>C (p.Ile239=) rs146425212 0.00043
NM_005097.4(LGI1):c.1155A>C (p.Leu385=) rs202148793 0.00026
NM_005097.3(LGI1):c.-227T>C rs150194814 0.00011
NM_005097.4(LGI1):c.191C>T (p.Thr64Ile) rs373616721 0.00011
NM_005097.4(LGI1):c.1106C>T (p.Ser369Phe) rs150357603 0.00010
NM_005097.4(LGI1):c.1669G>A (p.Ala557Thr) rs370955995 0.00007
NM_005097.4(LGI1):c.205G>A (p.Val69Ile) rs147469708 0.00006
NM_005097.4(LGI1):c.1392G>A (p.Ser464=) rs148804268 0.00005
NM_005097.4(LGI1):c.310G>A (p.Asp104Asn) rs145675377 0.00005
NM_005097.4(LGI1):c.1124C>T (p.Ala375Val) rs778913748 0.00004
NM_005097.4(LGI1):c.344C>T (p.Pro115Leu) rs763321607 0.00004
NM_005097.4(LGI1):c.*323A>C rs767119123 0.00003
NM_005097.4(LGI1):c.1318G>A (p.Val440Met) rs144400448 0.00003
NM_005097.4(LGI1):c.1336A>C (p.Ile446Leu) rs769204967 0.00003
NM_005097.4(LGI1):c.1459T>C (p.Tyr487His) rs748991956 0.00003
NM_005097.4(LGI1):c.34G>T (p.Ala12Ser) rs770065197 0.00003
NM_005097.4(LGI1):c.1075A>G (p.Ile359Val) rs148263562 0.00002
NM_005097.4(LGI1):c.1220G>A (p.Arg407His) rs201376381 0.00002
NM_005097.4(LGI1):c.1316C>T (p.Ser439Leu) rs143808356 0.00002
NM_005097.4(LGI1):c.1598G>A (p.Arg533His) rs543647504 0.00002
NM_005097.4(LGI1):c.275C>T (p.Ser92Leu) rs772750463 0.00002
NM_005097.4(LGI1):c.398A>G (p.His133Arg) rs376452111 0.00002
NM_005097.4(LGI1):c.626G>A (p.Arg209His) rs370151711 0.00002
NM_005097.4(LGI1):c.829A>G (p.Asn277Asp) rs571391768 0.00002
NM_005097.4(LGI1):c.983A>G (p.Lys328Arg) rs778819952 0.00002
NM_005097.3(LGI1):c.-304C>T rs886047484 0.00001
NM_005097.4(LGI1):c.*282A>G rs1172545288 0.00001
NM_005097.4(LGI1):c.*59T>A rs886047488 0.00001
NM_005097.4(LGI1):c.1040T>C (p.Val347Ala) rs1589775794 0.00001
NM_005097.4(LGI1):c.1060G>T (p.Ala354Ser) rs1438643979 0.00001
NM_005097.4(LGI1):c.1096G>A (p.Gly366Arg) rs1394822961 0.00001
NM_005097.4(LGI1):c.1129T>C (p.Tyr377His) rs758203843 0.00001
NM_005097.4(LGI1):c.113C>G (p.Ala38Gly) rs768415373 0.00001
NM_005097.4(LGI1):c.1210A>T (p.Ser404Cys) rs1564853070 0.00001
NM_005097.4(LGI1):c.1240A>G (p.Asn414Asp) rs775893967 0.00001
NM_005097.4(LGI1):c.1254A>T (p.Gln418His) rs531444070 0.00001
NM_005097.4(LGI1):c.1267C>A (p.Gln423Lys) rs1337103614 0.00001
NM_005097.4(LGI1):c.1285A>G (p.Met429Val) rs147473519 0.00001
NM_005097.4(LGI1):c.1330G>A (p.Val444Met) rs772468388 0.00001
NM_005097.4(LGI1):c.1331T>A (p.Val444Glu) rs775901528 0.00001
NM_005097.4(LGI1):c.133G>A (p.Val45Met) rs755563423 0.00001
NM_005097.4(LGI1):c.135G>C (p.Val45=) rs768003944 0.00001
NM_005097.4(LGI1):c.1391C>T (p.Ser464Leu) rs747229730 0.00001
NM_005097.4(LGI1):c.158C>T (p.Ala53Val) rs778829709 0.00001
NM_005097.4(LGI1):c.269C>T (p.Thr90Met) rs796052692 0.00001
NM_005097.4(LGI1):c.287+3G>A rs1370527260 0.00001
NM_005097.4(LGI1):c.360A>G (p.Leu120=) rs773488211 0.00001
NM_005097.4(LGI1):c.407G>A (p.Arg136Gln) rs767254591 0.00001
NM_005097.4(LGI1):c.432G>A (p.Leu144=) rs920223409 0.00001
NM_005097.4(LGI1):c.46C>G (p.Leu16Val) rs777973395 0.00001
NM_005097.4(LGI1):c.505G>A (p.Asp169Asn) rs1207210364 0.00001
NM_005097.4(LGI1):c.625C>T (p.Arg209Cys) rs751825973 0.00001
NM_005097.4(LGI1):c.647C>T (p.Ser216Leu) rs1318179573 0.00001
NM_005097.4(LGI1):c.651G>A (p.Lys217=) rs1292925776 0.00001
NM_005097.4(LGI1):c.673+5T>C rs1162193591 0.00001
NM_005097.4(LGI1):c.680C>T (p.Ala227Val) rs750984349 0.00001
NM_005097.4(LGI1):c.715A>G (p.Ile239Val) rs1234927321 0.00001
NM_005097.4(LGI1):c.757G>A (p.Ala253Thr) rs1440639718 0.00001
NM_005097.4(LGI1):c.836C>G (p.Thr279Arg) rs1159639109 0.00001
NM_005097.4(LGI1):c.887A>G (p.Tyr296Cys) rs1434032341 0.00001
NM_005097.4(LGI1):c.989G>A (p.Arg330Gln) rs745852819 0.00001
NM_005097.4(LGI1):c.998A>G (p.Asn333Ser) rs796052698 0.00001
NC_000010.10:g.(?_95549836)_(95557560_?)dup
NM_005097.4(LGI1):c.*338G>C rs182654305
NM_005097.4(LGI1):c.-66G>C rs886047485
NM_005097.4(LGI1):c.1003A>G (p.Ile335Val) rs2134026335
NM_005097.4(LGI1):c.1052G>T (p.Ser351Ile) rs2134026390
NM_005097.4(LGI1):c.1057A>C (p.Lys353Gln) rs2059987771
NM_005097.4(LGI1):c.1064G>C (p.Gly355Ala)
NM_005097.4(LGI1):c.1066T>C (p.Phe356Leu)
NM_005097.4(LGI1):c.1081A>C (p.Lys361Gln) rs141334842
NM_005097.4(LGI1):c.1083A>G (p.Lys361=) rs1337328821
NM_005097.4(LGI1):c.1097G>C (p.Gly366Ala) rs2059988287
NM_005097.4(LGI1):c.1112A>G (p.Gln371Arg) rs2059988505
NM_005097.4(LGI1):c.1125G>C (p.Ala375=) rs886047487
NM_005097.4(LGI1):c.1171C>T (p.Pro391Ser)
NM_005097.4(LGI1):c.1172C>T (p.Pro391Leu)
NM_005097.4(LGI1):c.1176G>C (p.Gln392His)
NM_005097.4(LGI1):c.1187C>T (p.Thr396Met) rs905576558
NM_005097.4(LGI1):c.1190C>T (p.Pro397Leu) rs2134026607
NM_005097.4(LGI1):c.1219C>G (p.Arg407Gly) rs759897282
NM_005097.4(LGI1):c.1219C>T (p.Arg407Cys)
NM_005097.4(LGI1):c.122A>G (p.Lys41Arg) rs2059585290
NM_005097.4(LGI1):c.1279C>A (p.Pro427Thr) rs2134026723
NM_005097.4(LGI1):c.1283A>G (p.Asn428Ser) rs1589775967
NM_005097.4(LGI1):c.1300G>A (p.Ala434Thr) rs758287710
NM_005097.4(LGI1):c.1306A>G (p.Lys436Glu) rs2134026771
NM_005097.4(LGI1):c.1319T>C (p.Val440Ala)
NM_005097.4(LGI1):c.1325G>A (p.Gly442Glu)
NM_005097.4(LGI1):c.1336A>G (p.Ile446Val)
NM_005097.4(LGI1):c.1369G>A (p.Val457Ile) rs2134026868
NM_005097.4(LGI1):c.1370T>C (p.Val457Ala) rs1554907821
NM_005097.4(LGI1):c.1373T>C (p.Met458Thr)
NM_005097.4(LGI1):c.1381G>A (p.Gly461Arg)
NM_005097.4(LGI1):c.1388C>T (p.Ser463Phe)
NM_005097.4(LGI1):c.1396C>A (p.Gln466Lys)
NM_005097.4(LGI1):c.1403T>C (p.Ile468Thr)
NM_005097.4(LGI1):c.1432G>A (p.Val478Met)
NM_005097.4(LGI1):c.1433T>C (p.Val478Ala)
NM_005097.4(LGI1):c.143G>A (p.Cys48Tyr) rs1554901937
NM_005097.4(LGI1):c.1474C>T (p.Leu492Phe)
NM_005097.4(LGI1):c.1487A>T (p.Tyr496Phe) rs2134027009
NM_005097.4(LGI1):c.1517C>A (p.Ala506Glu) rs1458989376
NM_005097.4(LGI1):c.1525G>A (p.Ala509Thr)
NM_005097.4(LGI1):c.1549T>A (p.Leu517Ile) rs2059992788
NM_005097.4(LGI1):c.154A>G (p.Asn52Asp) rs1216831495
NM_005097.4(LGI1):c.1552A>G (p.Asn518Asp) rs887433567
NM_005097.4(LGI1):c.1580A>G (p.His527Arg) rs2059993019
NM_005097.4(LGI1):c.1586C>T (p.Ser529Phe)
NM_005097.4(LGI1):c.1597C>T (p.Arg533Cys) rs771178397
NM_005097.4(LGI1):c.1611T>G (p.Phe537Leu) rs934608672
NM_005097.4(LGI1):c.1630A>G (p.Asn544Asp)
NM_005097.4(LGI1):c.163T>C (p.Cys55Arg)
NM_005097.4(LGI1):c.1652T>C (p.Val551Ala) rs752672428
NM_005097.4(LGI1):c.1667G>A (p.Ser556Asn)
NM_005097.4(LGI1):c.191C>G (p.Thr64Ser) rs373616721
NM_005097.4(LGI1):c.196C>G (p.Pro66Ala)
NM_005097.4(LGI1):c.206T>C (p.Val69Ala)
NM_005097.4(LGI1):c.215+7C>T rs1589747145
NM_005097.4(LGI1):c.216-3C>T rs1461103422
NM_005097.4(LGI1):c.221T>C (p.Phe74Ser)
NM_005097.4(LGI1):c.248C>T (p.Ser83Leu) rs1279436195
NM_005097.4(LGI1):c.253G>A (p.Gly85Arg) rs2133976199
NM_005097.4(LGI1):c.254G>A (p.Gly85Glu) rs2059592627
NM_005097.4(LGI1):c.272C>T (p.Pro91Leu) rs796052693
NM_005097.4(LGI1):c.308T>C (p.Phe103Ser) rs2059804388
NM_005097.4(LGI1):c.313G>A (p.Val105Met)
NM_005097.4(LGI1):c.329C>T (p.Ala110Val)
NM_005097.4(LGI1):c.358T>G (p.Leu120Val) rs796052697
NM_005097.4(LGI1):c.359+7A>C
NM_005097.4(LGI1):c.360-19A>G
NM_005097.4(LGI1):c.361T>A (p.Phe121Ile)
NM_005097.4(LGI1):c.374A>G (p.Asn125Ser)
NM_005097.4(LGI1):c.397C>T (p.His133Tyr)
NM_005097.4(LGI1):c.401C>T (p.Thr134Ile) rs2059806034
NM_005097.4(LGI1):c.431+5G>A rs2134001469
NM_005097.4(LGI1):c.432-3dup rs1554906720
NM_005097.4(LGI1):c.432G>T (p.Leu144Phe) rs920223409
NM_005097.4(LGI1):c.44C>G (p.Pro15Arg)
NM_005097.4(LGI1):c.460C>A (p.Leu154Ile) rs2059923858
NM_005097.4(LGI1):c.464C>T (p.Pro155Leu) rs1589771117
NM_005097.4(LGI1):c.47T>G (p.Leu16Arg) rs1234339369
NM_005097.4(LGI1):c.496A>C (p.Thr166Pro)
NM_005097.4(LGI1):c.512G>C (p.Arg171Thr) rs2134020795
NM_005097.4(LGI1):c.553G>A (p.Val185Met) rs1235699165
NM_005097.4(LGI1):c.55A>G (p.Ile19Val) rs2059584229
NM_005097.4(LGI1):c.568C>T (p.His190Tyr) rs1345126535
NM_005097.4(LGI1):c.572C>A (p.Thr191Asn)
NM_005097.4(LGI1):c.58G>A (p.Ala20Thr) rs2059584327
NM_005097.4(LGI1):c.593T>C (p.Ile198Thr) rs2134020872
NM_005097.4(LGI1):c.601G>A (p.Glu201Lys) rs2134020895
NM_005097.4(LGI1):c.624G>T (p.Lys208Asn) rs2059948178
NM_005097.4(LGI1):c.634A>G (p.Asn212Asp) rs757629755
NM_005097.4(LGI1):c.639T>A (p.Ser213Arg)
NM_005097.4(LGI1):c.64T>A (p.Phe22Ile) rs2133975421
NM_005097.4(LGI1):c.657_658delinsCC (p.Asp220His) rs2134021029
NM_005097.4(LGI1):c.657_658inv (p.Asp220Asn)
NM_005097.4(LGI1):c.674-16T>G
NM_005097.4(LGI1):c.688C>G (p.Gln230Glu)
NM_005097.4(LGI1):c.691G>T (p.Asp231Tyr)
NM_005097.4(LGI1):c.716T>C (p.Ile239Thr)
NM_005097.4(LGI1):c.720C>A (p.Asp240Glu) rs2059951179
NM_005097.4(LGI1):c.726T>G (p.Phe242Leu) rs2059951247
NM_005097.4(LGI1):c.73C>T (p.Leu25Phe)
NM_005097.4(LGI1):c.742_743delinsAT (p.Glu248Met)
NM_005097.4(LGI1):c.749T>G (p.Val250Gly)
NM_005097.4(LGI1):c.757G>T (p.Ala253Ser)
NM_005097.4(LGI1):c.758C>T (p.Ala253Val)
NM_005097.4(LGI1):c.790G>C (p.Glu264Gln)
NM_005097.4(LGI1):c.817C>T (p.Arg273Trp) rs760376686
NM_005097.4(LGI1):c.818G>A (p.Arg273Gln) rs750249658
NM_005097.4(LGI1):c.821A>G (p.Asn274Ser)
NM_005097.4(LGI1):c.827ACA[1] (p.Asn277del)
NM_005097.4(LGI1):c.828C>G (p.Asp276Glu)
NM_005097.4(LGI1):c.835A>G (p.Thr279Ala) rs752003436
NM_005097.4(LGI1):c.838+11C>T rs886047486
NM_005097.4(LGI1):c.838+3A>G rs781205119
NM_005097.4(LGI1):c.83C>T (p.Ala28Val)
NM_005097.4(LGI1):c.853G>A (p.Val285Ile) rs944813713
NM_005097.4(LGI1):c.853G>C (p.Val285Leu) rs944813713
NM_005097.4(LGI1):c.862C>T (p.Pro288Ser) rs2059985791
NM_005097.4(LGI1):c.865A>G (p.Ile289Val)
NM_005097.4(LGI1):c.882G>C (p.Gln294His)
NM_005097.4(LGI1):c.907T>C (p.Phe303Leu)
NM_005097.4(LGI1):c.90G>C (p.Leu30Phe) rs1178032111
NM_005097.4(LGI1):c.913G>A (p.Gly305Ser)
NM_005097.4(LGI1):c.932G>A (p.Arg311Gln)
NM_005097.4(LGI1):c.941T>A (p.Phe314Tyr) rs2134026264
NM_005097.4(LGI1):c.962T>C (p.Ile321Thr)
NM_005097.4(LGI1):c.992A>C (p.Lys331Thr) rs2059987155

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