ClinVar Miner

List of variants studied for hereditary peripheral neuropathy by Victorian Clinical Genetics Services, Murdoch Childrens Research Institute

Included ClinVar conditions (479):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 223
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HGVS dbSNP gnomAD frequency
NM_001370658.1(BTD):c.1270G>C (p.Asp424His) rs13078881 0.03225
NM_000153.4(GALC):c.334A>G (p.Thr112Ala) rs147313927 0.00229
NM_017411.4(SMN2):c.859G>C (p.Gly287Arg) rs121909192 0.00208
NM_024577.4(SH3TC2):c.505T>C (p.Tyr169His) rs80359890 0.00205
NM_015506.3(MMACHC):c.271dup (p.Arg91fs) rs398124292 0.00093
NM_024577.4(SH3TC2):c.1298C>T (p.Ser433Leu) rs200967041 0.00088
NM_002693.3(POLG):c.1399G>A (p.Ala467Thr) rs113994095 0.00068
NM_024577.4(SH3TC2):c.2860C>T (p.Arg954Ter) rs80338933 0.00067
NM_000288.4(PEX7):c.875T>A (p.Leu292Ter) rs1805137 0.00048
NM_000487.6(ARSA):c.465+1G>A rs80338815 0.00046
NM_000520.6(HEXA):c.1274_1277dup (p.Tyr427fs) rs387906309 0.00046
NM_000521.4(HEXB):c.1250C>T (p.Pro417Leu) rs28942073 0.00046
NM_003560.4(PLA2G6):c.2068G>A (p.Val690Ile) rs141777179 0.00041
NM_001370658.1(BTD):c.451G>A (p.Ala151Thr) rs13073139 0.00039
NM_000487.6(ARSA):c.1283C>T (p.Pro428Leu) rs28940893 0.00037
NM_015506.3(MMACHC):c.440G>C (p.Gly147Ala) rs140522266 0.00034
NM_000784.4(CYP27A1):c.1183C>T (p.Arg395Cys) rs121908096 0.00031
NM_014874.4(MFN2):c.2119C>T (p.Arg707Trp) rs119103267 0.00029
NM_000466.3(PEX1):c.2528G>A (p.Gly843Asp) rs61750420 0.00025
NM_000520.6(HEXA):c.1073+1G>A rs76173977 0.00021
NM_000153.4(GALC):c.956A>G (p.Tyr319Cys) rs183105855 0.00019
NM_000287.4(PEX6):c.617G>A (p.Gly206Glu) rs139093654 0.00018
NM_002180.3(IGHMBP2):c.1488C>A (p.Cys496Ter) rs145226920 0.00016
NM_000520.6(HEXA):c.805G>A (p.Gly269Ser) rs121907954 0.00015
NM_000466.3(PEX1):c.3283G>A (p.Asp1095Asn) rs753699011 0.00014
NM_005908.4(MANBA):c.1499G>A (p.Arg500His) rs147542645 0.00014
NM_015506.3(MMACHC):c.389A>G (p.Tyr130Cys) rs200094982 0.00014
NM_001130823.3(DNMT1):c.382C>A (p.Pro128Thr) rs146601335 0.00013
NM_000487.6(ARSA):c.511G>A (p.Asp171Asn) rs74315466 0.00010
NM_002180.3(IGHMBP2):c.1082T>C (p.Leu361Pro) rs201060167 0.00008
NM_002693.3(POLG):c.2740A>C (p.Thr914Pro) rs139590686 0.00008
NM_003632.3(CNTNAP1):c.3560G>A (p.Arg1187His) rs374717974 0.00008
NM_181882.3(PRX):c.553C>T (p.Arg185Cys) rs376863946 0.00008
NM_003560.4(PLA2G6):c.2370T>G (p.Tyr790Ter) rs121908680 0.00006
NM_015046.7(SETX):c.3016G>A (p.Gly1006Arg) rs141266068 0.00006
NM_000166.6(GJB1):c.319C>T (p.Arg107Trp) rs863224973 0.00005
NM_000288.4(PEX7):c.649G>A (p.Gly217Arg) rs121909152 0.00005
NM_000371.4(TTR):c.148G>A (p.Val50Met) rs28933979 0.00004
NM_003560.4(PLA2G6):c.2221C>T (p.Arg741Trp) rs530348521 0.00004
NM_005957.5(MTHFR):c.155G>A (p.Arg52Gln) rs754980119 0.00004
NM_016138.5(COQ7):c.319C>T (p.Arg107Trp) rs769570290 0.00004
NM_001349253.2(SCN11A):c.1061G>A (p.Arg354Gln) rs1380372157 0.00003
NM_001370658.1(BTD):c.1046C>T (p.Pro349Leu) rs397514400 0.00003
NM_001370658.1(BTD):c.908A>G (p.His303Arg) rs397507176 0.00003
NM_005957.5(MTHFR):c.1699C>T (p.Arg567Ter) rs140277700 0.00003
NM_015459.5(ATL3):c.1346C>T (p.Thr449Met) rs775539106 0.00003
NM_170707.4(LMNA):c.892C>T (p.Arg298Cys) rs59885338 0.00003
NM_000153.4(GALC):c.857G>A (p.Gly286Asp) rs199847983 0.00002
NM_000274.4(OAT):c.860T>C (p.Ile287Thr) rs550949287 0.00002
NM_000520.6(HEXA):c.1421+1G>C rs147324677 0.00002
NM_001003800.2(BICD2):c.1126A>G (p.Thr376Ala) rs757885234 0.00002
NM_001130823.3(DNMT1):c.3353A>G (p.His1118Arg) rs150331990 0.00002
NM_002693.3(POLG):c.1156C>T (p.Arg386Cys) rs199759055 0.00002
NM_000143.4(FH):c.923C>G (p.Ala308Gly) rs1057524385 0.00001
NM_000153.4(GALC):c.1630G>A (p.Asp544Asn) rs387906952 0.00001
NM_000274.4(OAT):c.722C>T (p.Pro241Leu) rs121965051 0.00001
NM_000287.4(PEX6):c.1801C>T (p.Arg601Trp) rs61753225 0.00001
NM_000287.4(PEX6):c.2362G>A (p.Val788Met) rs267608240 0.00001
NM_000371.4(TTR):c.238A>G (p.Thr80Ala) rs121918070 0.00001
NM_000371.4(TTR):c.367C>T (p.Arg123Cys) rs371566010 0.00001
NM_000466.3(PEX1):c.2614C>T (p.Arg872Ter) rs61750422 0.00001
NM_000487.6(ARSA):c.1115G>A (p.Arg372Gln) rs74315477 0.00001
NM_000520.6(HEXA):c.1444G>A (p.Glu482Lys) rs121907952 0.00001
NM_000520.6(HEXA):c.1510C>T (p.Arg504Cys) rs28942071 0.00001
NM_000520.6(HEXA):c.233G>A (p.Trp78Ter) rs769035623 0.00001
NM_000520.6(HEXA):c.508C>T (p.Arg170Trp) rs121907972 0.00001
NM_001005361.3(DNM2):c.2152C>T (p.Arg718Trp) rs763927287 0.00001
NM_001031710.3(KLHL7):c.1258C>T (p.Arg420Cys) rs780705654 0.00001
NM_001244008.2(KIF1A):c.2357C>T (p.Thr786Met) rs766807173 0.00001
NM_001303256.3(MORC2):c.956G>A (p.Arg319His) rs1163530787 0.00001
NM_001365536.1(SCN9A):c.5351del (p.Glu1784fs) rs1553473041 0.00001
NM_001540.5(HSPB1):c.250G>C (p.Gly84Arg) rs770272088 0.00001
NM_001605.3(AARS1):c.1823C>T (p.Thr608Met) rs1597435885 0.00001
NM_001931.5(DLAT):c.1728C>A (p.Phe576Leu) rs119103240 0.00001
NM_002109.6(HARS1):c.256C>T (p.Arg86Cys) rs775758650 0.00001
NM_002180.3(IGHMBP2):c.1273C>T (p.Arg425Cys) rs1303837541 0.00001
NM_003846.3(PEX11B):c.595C>T (p.Arg199Ter) rs781984979 0.00001
NM_004208.4(AIFM1):c.1646C>T (p.Ala549Val) rs761953453 0.00001
NM_005957.5(MTHFR):c.1013T>C (p.Met338Thr) rs368321176 0.00001
NM_015506.3(MMACHC):c.394C>T (p.Arg132Ter) rs121918241 0.00001
NM_016138.5(COQ7):c.161G>A (p.Arg54Gln) rs770654508 0.00001
NM_021625.5(TRPV4):c.1277C>T (p.Thr426Met) rs757522459 0.00001
NM_024577.4(SH3TC2):c.386-2A>C rs145670786 0.00001
NM_170707.4(LMNA):c.1315C>T (p.Arg439Cys) rs62636506 0.00001
NM_213655.5(WNK1):c.2920C>T (p.Gln974Ter) rs1478989689 0.00001
NC_000002.12:g.43986415_44009956del
NM_000052.7(ATP7A):c.2096T>A (p.Met699Lys) rs2149095258
NM_000108.5(DLD):c.1436A>T (p.Asp479Val) rs397514649
NM_000143.4(FH):c.1A>C (p.Met1Leu) rs776806414
NM_000153.4(GALC):c.1114G>T (p.Ala372Ser) rs759286485
NM_000153.4(GALC):c.82G>T (p.Ala28Ser)
NM_000166.6(GJB1):c.423C>G (p.Phe141Leu) rs1555937180
NM_000166.6(GJB1):c.43C>T (p.Arg15Trp) rs116840815
NM_000166.6(GJB1):c.445T>A (p.Phe149Ile) rs1602349369
NM_000166.6(GJB1):c.475G>A (p.Gly159Ser) rs1555937194
NM_000182.5(HADHA):c.1811del (p.Gly604fs) rs747985669
NM_000182.5(HADHA):c.302G>T (p.Gly101Val)
NM_000182.5(HADHA):c.72del (p.Gly23_Tyr24insTer) rs1553316176
NM_000182.5(HADHA):c.800-1G>T rs1553314024
NM_000214.3(JAG1):c.1856A>G (p.Lys619Arg) rs1009426924
NM_000217.3(KCNA1):c.931G>T (p.Gly311Cys) rs1947357459
NM_000217.3(KCNA1):c.985C>A (p.Leu329Ile)
NM_000284.4(PDHA1):c.1045G>A (p.Ala349Thr) rs886044701
NM_000284.4(PDHA1):c.1091T>G (p.Leu364Arg)
NM_000284.4(PDHA1):c.1133G>A (p.Arg378His) rs137853250
NM_000284.4(PDHA1):c.194A>C (p.Tyr65Ser)
NM_000284.4(PDHA1):c.483C>T (p.Tyr161=) rs398123300
NM_000284.4(PDHA1):c.511G>A (p.Val171Met)
NM_000284.4(PDHA1):c.518T>C (p.Leu173Pro)
NM_000284.4(PDHA1):c.57+2505C>G
NM_000284.4(PDHA1):c.628A>G (p.Met210Val) rs794727843
NM_000284.4(PDHA1):c.863G>A (p.Arg288His) rs137853258
NM_000284.4(PDHA1):c.934_940del (p.Ser312fs) rs606231185
NM_000287.4(PEX6):c.1054C>T (p.Gln352Ter) rs267608212
NM_000287.4(PEX6):c.1314_1321del (p.Glu439fs) rs267608216
NM_000287.4(PEX6):c.1947del (p.Ile650fs) rs267608227
NM_000287.4(PEX6):c.1996G>T (p.Glu666Ter) rs1769818844
NM_000344.4(SMN1):c.283G>C (p.Gly95Arg) rs104893927
NM_000344.4(SMN1):c.291del (p.Lys97fs) rs2112806309
NM_000344.4(SMN1):c.549del (p.Lys184fs) rs2112806512
NM_000344.4(SMN1):c.724-54C>T
NM_000344.4(SMN1):c.785G>T (p.Ser262Ile) rs1554066659
NM_000344.4(SMN1):c.803A>G (p.Tyr268Cys) rs1554082113
NM_000344.4(SMN1):c.815A>G (p.Tyr272Cys) rs104893922
NM_000399.5(EGR2):c.1064A>G (p.Asp355Gly) rs1589080611
NM_000399.5(EGR2):c.1075C>G (p.Arg359Gly) rs104894161
NM_000466.3(PEX1):c.1730G>A (p.Arg577His)
NM_000466.3(PEX1):c.2165T>C (p.Leu722Pro)
NM_000466.3(PEX1):c.2396dup (p.Ser800fs) rs778871894
NM_000466.3(PEX1):c.2916del (p.Gly973fs) rs61750426
NM_000466.3(PEX1):c.3085G>T (p.Asp1029Tyr)
NM_000466.3(PEX1):c.831_834del (p.Ser278fs) rs2116245323
NM_000487.6(ARSA):c.1360G>A (p.Val454Met)
NM_000487.6(ARSA):c.739G>A (p.Gly247Arg) rs74315471
NM_000520.6(HEXA):c.736G>A (p.Ala246Thr) rs758166013
NM_000521.4(HEXB):c.1061A>G (p.Asp354Gly) rs781244479
NM_000530.8(MPZ):c.233C>A (p.Ser78Ter)
NM_000530.8(MPZ):c.253G>T (p.Gly85Ter)
NM_000530.8(MPZ):c.356A>G (p.Tyr119Cys) rs879254038
NM_000701.8(ATP1A1):c.1798C>G (p.Pro600Ala) rs1553192091
NM_000701.8(ATP1A1):c.8A>C (p.Lys3Thr) rs976510541
NM_000784.4(CYP27A1):c.437C>T (p.Pro146Leu)
NM_001003800.2(BICD2):c.1784C>T (p.Ala595Val)
NM_001005361.3(DNM2):c.1196+745G>T
NM_001005361.3(DNM2):c.2390C>T (p.Pro797Leu)
NM_001031710.3(KLHL7):c.1463G>A (p.Gly488Asp)
NM_001122955.4(BSCL2):c.478C>A (p.Arg160Ser) rs772536764
NM_001130438.3(SPTAN1):c.2988dup (p.Leu997fs) rs2131267665
NM_001130823.3(DNMT1):c.1532A>G (p.Tyr511Cys) rs199473690
NM_001130823.3(DNMT1):c.3256G>A (p.Glu1086Lys)
NM_001130823.3(DNMT1):c.3388G>A (p.Gly1130Arg)
NM_001244008.2(KIF1A):c.790C>T (p.Arg264Cys)
NM_001349253.2(SCN11A):c.4894A>G (p.Lys1632Glu)
NM_001351132.2(PEX5):c.552G>A (p.Trp184Ter) rs1419213790
NM_001365536.1(SCN9A):c.1828C>A (p.Pro610Thr) rs41268673
NM_001365536.1(SCN9A):c.2424G>A (p.Trp808Ter) rs769971743
NM_001374736.1(DST):c.4930-1094_4930-1092del
NM_001376.5(DYNC1H1):c.1792C>T (p.Arg598Cys) rs587780564
NM_001376.5(DYNC1H1):c.5597T>A (p.Phe1866Tyr) rs2141289673
NM_001376.5(DYNC1H1):c.7213G>A (p.Gly2405Arg) rs2152581608
NM_001377137.1(GBF1):c.5501C>T (p.Ala1834Val) rs770517190
NM_001386140.1(MTTP):c.1344+2T>A
NM_001386140.1(MTTP):c.61+2T>C
NM_001540.5(HSPB1):c.544C>T (p.Pro182Ser) rs104894020
NM_001953.5(TYMP):c.1109A>T (p.Gln370Leu) rs1276418601
NM_001953.5(TYMP):c.1444C>T (p.Gln482Ter)
NM_001953.5(TYMP):c.695T>C (p.Val232Ala) rs1294823677
NM_001953.5(TYMP):c.893G>A (p.Gly298Asp) rs1064792872
NM_002495.4(NDUFS4):c.350+1G>T
NM_002529.4(NTRK1):c.2207C>A (p.Ala736Glu)
NM_002617.4(PEX10):c.637dup (p.Ala213fs)
NM_002693.3(POLG):c.3328C>T (p.His1110Tyr) rs2152058760
NM_002693.3(POLG):c.3509T>G (p.Leu1170Arg) rs796052913
NM_002693.3(POLG):c.3538_3539dup (p.Ala1182fs)
NM_002693.3(POLG):c.3637C>T (p.Pro1213Ser) rs2055307106
NM_002693.3(POLG):c.419G>T (p.Arg140Leu)
NM_002972.4(SBF1):c.2569+2T>C
NM_002972.4(SBF1):c.2948T>C (p.Leu983Pro)
NM_003104.6(SORD):c.73_88del (p.Tyr25fs)
NM_003104.6(SORD):c.757del (p.Ala253fs) rs55901542
NM_003560.4(PLA2G6):c.1069G>A (p.Ala357Thr) rs2145770192
NM_003560.4(PLA2G6):c.562A>G (p.Thr188Ala)
NM_003560.4(PLA2G6):c.710G>C (p.Arg237Pro)
NM_003632.3(CNTNAP1):c.3361C>T (p.Arg1121Ter) rs142756549
NM_004813.4(PEX16):c.714G>C (p.Trp238Cys)
NM_004863.4(SPTLC2):c.1151C>T (p.Ser384Phe) rs1594986869
NM_004990.4(MARS1):c.916C>T (p.Leu306Phe)
NM_005908.4(MANBA):c.549+1G>A rs1334537145
NM_005957.5(MTHFR):c.1166+5G>C rs1483632178
NM_005957.5(MTHFR):c.1228_1242del (p.Ser410_Lys414del) rs1297161027
NM_005957.5(MTHFR):c.1796A>G (p.Tyr599Cys) rs2100495013
NM_006158.5(NEFL):c.1357G>T (p.Glu453Ter)
NM_006158.5(NEFL):c.18C>G (p.Tyr6Ter) rs2117256073
NM_006415.4(SPTLC1):c.58G>T (p.Ala20Ser) rs879254294
NM_006736.6(DNAJB2):c.65+1G>C
NM_007046.4(EMILIN1):c.2299A>G (p.Thr767Ala)
NM_007126.5(VCP):c.1106T>C (p.Ile369Thr) rs1828723406
NM_007289.4(MME):c.1094+5G>T rs1048105813
NM_014317.5(PDSS1):c.173_174insA (p.Ile58_Asn59insTer)
NM_014317.5(PDSS1):c.18G>A (p.Trp6Ter)
NM_014317.5(PDSS1):c.484C>G (p.Gln162Glu)
NM_014365.3(HSPB8):c.508del (p.Gln170fs)
NM_014874.4(MFN2):c.1555C>T (p.Arg519Cys) rs369140232
NM_014874.4(MFN2):c.1817del (p.Gly606fs)
NM_014874.4(MFN2):c.629A>G (p.Asp210Gly) rs1639043704
NM_014874.4(MFN2):c.691T>C (p.Ser231Pro)
NM_014874.4(MFN2):c.730G>A (p.Val244Met) rs879253777
NM_014874.4(MFN2):c.775C>T (p.Arg259Cys) rs587777875
NM_015046.7(SETX):c.6421dup (p.Gln2141fs)
NM_015506.3(MMACHC):c.544T>C (p.Cys182Arg) rs955468279
NM_015506.3(MMACHC):c.701del (p.Leu234fs) rs767339897
NM_017446.4(MRPL39):c.526del (p.Ser176fs)
NM_018082.6(POLR3B):c.2024C>T (p.Pro675Leu)
NM_018972.4(GDAP1):c.579+5G>A rs1809391441
NM_020247.5(COQ8A):c.210del (p.Asn71fs)
NM_021076.4(NEFH):c.1095del (p.Gln365fs)
NM_021629.4(GNB4):c.834C>A (p.Phe278Leu)
NM_022489.4(INF2):c.1733G>A (p.Arg578His)
NM_022834.5(VWA1):c.462del (p.Met155fs)
NM_024577.4(SH3TC2):c.335C>T (p.Thr112Ile)
NM_025137.4(SPG11):c.1906C>G (p.Leu636Val) rs145316065
NM_133259.4(LRPPRC):c.121C>T (p.Pro41Ser) rs908473003
NM_133259.4(LRPPRC):c.2882T>C (p.Leu961Pro)

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