ClinVar Miner

List of variants in gene LYST reported as benign for congenital nervous system disorder

Included ClinVar conditions (854):
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 94
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HGVS dbSNP gnomAD frequency
NM_000081.4(LYST):c.1251A>G (p.Gln417=) rs1063128 0.41864
NM_000081.4(LYST):c.1683A>G (p.Leu561=) rs3820553 0.41844
NM_000081.4(LYST):c.4956A>G (p.Leu1652=) rs6696123 0.41826
NM_000081.4(LYST):c.5373G>A (p.Lys1791=) rs2273584 0.41769
NM_000081.4(LYST):c.153A>C (p.Gly51=) rs11464 0.13219
NM_000081.4(LYST):c.2355T>C (p.Leu785=) rs3768066 0.10928
NM_000081.4(LYST):c.4392C>T (p.Asn1464=) rs11583387 0.09239
NM_000081.4(LYST):c.2316C>T (p.Asp772=) rs16832868 0.05899
NM_000081.4(LYST):c.5847G>C (p.Gln1949His) rs6665568 0.05891
NM_000081.4(LYST):c.6630A>G (p.Glu2210=) rs34466404 0.05877
NM_000081.4(LYST):c.574T>G (p.Leu192Val) rs7524261 0.04386
NM_000081.4(LYST):c.8411G>A (p.Gly2804Asp) rs35333195 0.04044
NM_000081.4(LYST):c.3989A>C (p.Asp1330Ala) rs74641549 0.04030
NM_000081.4(LYST):c.3050G>A (p.Ser1017Asn) rs10465613 0.03661
NM_000081.4(LYST):c.5923-19G>T rs141197189 0.03063
NM_000081.4(LYST):c.7857T>C (p.His2619=) rs34160788 0.02966
NM_000081.4(LYST):c.6900G>A (p.Leu2300=) rs10926586 0.02954
NM_000081.4(LYST):c.7137A>C (p.Leu2379=) rs61738992 0.02884
NM_000081.4(LYST):c.7793T>A (p.Phe2598Tyr) rs34642241 0.02388
NM_000081.4(LYST):c.9C>T (p.Thr3=) rs33998267 0.01172
NM_000081.4(LYST):c.5945C>T (p.Thr1982Ile) rs146591126 0.00669
NM_000081.4(LYST):c.10941-7C>A rs72761794 0.00614
NM_000081.4(LYST):c.7059+7G>A rs111764031 0.00582
NM_000081.4(LYST):c.6812A>G (p.Asp2271Gly) rs112601869 0.00580
NM_000081.4(LYST):c.8898T>C (p.Tyr2966=) rs144475533 0.00560
NM_000081.4(LYST):c.5518T>G (p.Ser1840Ala) rs115330112 0.00485
NM_000081.4(LYST):c.10800+4G>T rs41308172 0.00441
NM_000081.4(LYST):c.6482A>C (p.Glu2161Ala) rs147756847 0.00416
NM_000081.4(LYST):c.1686G>C (p.Gln562His) rs77091385 0.00394
NM_000081.4(LYST):c.4863-19T>C rs150288597 0.00393
NM_000081.4(LYST):c.5291G>C (p.Gly1764Ala) rs35413645 0.00350
NM_000081.4(LYST):c.6292G>A (p.Ala2098Thr) rs146091043 0.00315
NM_000081.4(LYST):c.3359G>T (p.Ser1120Ile) rs143223086 0.00302
NM_000081.4(LYST):c.5223T>C (p.Leu1741=) rs7530527 0.00277
NM_000081.4(LYST):c.2363+4T>C rs201398337 0.00252
NM_000081.4(LYST):c.8487C>T (p.Ile2829=) rs144597913 0.00126
NM_000081.4(LYST):c.4548C>T (p.Ser1516=) rs116551057 0.00108
NM_000081.4(LYST):c.6588A>G (p.Gly2196=) rs34423788 0.00093
NM_000081.4(LYST):c.2769A>C (p.Ser923=) rs112739986 0.00086
NM_000081.4(LYST):c.8368A>C (p.Lys2790Gln) rs138506576 0.00061
NM_000081.4(LYST):c.9198C>T (p.Ser3066=) rs543359133 0.00039
NM_000081.4(LYST):c.1655T>C (p.Val552Ala) rs199617821 0.00038
NM_000081.4(LYST):c.4863-4G>A rs201382097 0.00032
NM_000081.4(LYST):c.6782G>A (p.Arg2261His) rs147791378 0.00031
NM_000081.4(LYST):c.368A>G (p.His123Arg) rs3768067 0.00027
NM_000081.4(LYST):c.2700A>G (p.Leu900=) rs111463684 0.00017
NM_000081.4(LYST):c.1494A>G (p.Arg498=) rs201412615 0.00013
NM_000081.4(LYST):c.2150A>G (p.Asn717Ser) rs201255245 0.00013
NM_000081.4(LYST):c.2517T>C (p.Ile839=) rs78172154 0.00012
NM_000081.4(LYST):c.6078C>T (p.Tyr2026=) rs80338660 0.00006
NM_000081.4(LYST):c.2908A>C (p.Ile970Leu) rs539146732 0.00001
NM_000081.4(LYST):c.6216A>G (p.Val2072=) rs371248013 0.00001
NM_000081.4(LYST):c.*1275T>C
NM_000081.4(LYST):c.*1499G>T
NM_000081.4(LYST):c.*1723A>G
NM_000081.4(LYST):c.*446T>C
NM_000081.4(LYST):c.*685G>T
NM_000081.4(LYST):c.*725G>A
NM_000081.4(LYST):c.10374+20A>G
NM_000081.4(LYST):c.10565-20del
NM_000081.4(LYST):c.10940+20A>G
NM_000081.4(LYST):c.10941-8dup
NM_000081.4(LYST):c.11196-10del
NM_000081.4(LYST):c.11196-10dup
NM_000081.4(LYST):c.11268-17dup rs36014994
NM_000081.4(LYST):c.11268-5del rs36014994
NM_000081.4(LYST):c.11268-6_11268-5del rs36014994
NM_000081.4(LYST):c.2363+17G>A
NM_000081.4(LYST):c.2364-16dup
NM_000081.4(LYST):c.3436C>T (p.Leu1146Phe)
NM_000081.4(LYST):c.3940-17dup
NM_000081.4(LYST):c.4007-20dup
NM_000081.4(LYST):c.4688+19C>A
NM_000081.4(LYST):c.4863-11T>G
NM_000081.4(LYST):c.5023+14G>A
NM_000081.4(LYST):c.5024-12del
NM_000081.4(LYST):c.5461-13_5461-12dup rs557545474
NM_000081.4(LYST):c.5461-3del rs557545474
NM_000081.4(LYST):c.5461-3dup rs557545474
NM_000081.4(LYST):c.5923-11del
NM_000081.4(LYST):c.5923-11dup
NM_000081.4(LYST):c.5923-4dup
NM_000081.4(LYST):c.6122-13del rs201404906
NM_000081.4(LYST):c.6122-13dup
NM_000081.4(LYST):c.6253+18G>A
NM_000081.4(LYST):c.6552G>A (p.Gln2184=)
NM_000081.4(LYST):c.7229+50CTTTT[7] rs71174459
NM_000081.4(LYST):c.7562G>C (p.Arg2521Thr)
NM_000081.4(LYST):c.7973-11del
NM_000081.4(LYST):c.8359-19del
NM_000081.4(LYST):c.8359-5dup
NM_000081.4(LYST):c.8948-12del
NM_000081.4(LYST):c.9162+11G>A
NM_000081.4(LYST):c.9316-19del

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