ClinVar Miner

List of variants reported as not provided for central nervous system cancer

Included ClinVar conditions (49):

Adrenocortical carcinoma, hereditary; Familial cancer of breast; Glioma susceptibility 1; Bone osteosarcoma; Li-Fraumeni syndrome 1; Nasopharyngeal carcinoma; Carcinoma of pancreas; Choroid plexus papilloma; Basal cell carcinoma, susceptibility to, 7; Hepatocellular carcinoma; Colorectal cancer; Bone marrow failure syndrome 5
Adrenocortical carcinoma, hereditary; Familial cancer of breast; Glioma susceptibility 1; Bone osteosarcoma; Li-Fraumeni syndrome 1; Nasopharyngeal carcinoma; Carcinoma of pancreas; Choroid plexus papilloma; Carcinoma of colon; Basal cell carcinoma, susceptibility to, 7; Hepatocellular carcinoma
Adrenocortical carcinoma, hereditary; Familial cancer of breast; Glioma susceptibility 1; Bone osteosarcoma; Li-Fraumeni syndrome 1; Nasopharyngeal carcinoma; Choroid plexus papilloma; Basal cell carcinoma, susceptibility to, 7; Familial pancreatic carcinoma; Hepatocellular carcinoma; Colorectal cancer; Bone marrow failure syndrome 5
Adrenocortical carcinoma, hereditary; Glioma susceptibility 1; Li-Fraumeni syndrome 1; Choroid plexus papilloma; Basal cell carcinoma, susceptibility to, 7; Colorectal cancer; Bone marrow failure syndrome 5
Adult spinal cord ependymoma
Anaplastic ependymoma
Anaplastic oligodendroglioma
Astrocytoma, anaplastic
Astrocytoma, anaplastic; Pleomorphic xanthoastrocytoma
Atypical teratoid rhabdoid tumor
Brainstem glioma
Carney-Stratakis syndrome; Paragangliomas 4; Pheochromocytoma
Childhood kidney cell carcinoma; High-grade astrocytoma with piloid features
Choroid plexus carcinoma
Choroid plexus papilloma
Diffuse intrinsic pontine glioma
Diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Glioma susceptibility 3; Familial prostate cancer
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Malignant tumor of prostate; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Malignant tumor of prostate; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3; Melanoma, cutaneous malignant, susceptibility to, 1
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Malignant tumor of prostate; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3; Tracheoesophageal fistula
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3; Familial prostate cancer
Gastrointestinal stromal tumor; Carney-Stratakis syndrome; Paragangliomas 4; Pheochromocytoma; Cowden syndrome 1
Gastrointestinal stromal tumor; Carney-Stratakis syndrome; Paragangliomas 4; Pheochromocytoma; Mitochondrial complex 2 deficiency, nuclear type 4
Gastrointestinal stromal tumor; Mitochondrial complex II deficiency, nuclear type 1; Hereditary pheochromocytoma-paraganglioma; Paragangliomas 5
Gastrointestinal stromal tumor; Paragangliomas 4; Pheochromocytoma
Glioblastoma
Glioblastoma multiforme
Glioma susceptibility 3
Granular cell cancer
High-grade astrocytoma with piloid features
Leigh syndrome; Mitochondrial complex II deficiency, nuclear type 1; Dilated cardiomyopathy 1GG; Paragangliomas 5
Malignant glioma
Malignant neoplasm of brain
Mitochondrial complex II deficiency, nuclear type 1; Dilated cardiomyopathy 1GG; Paragangliomas 5
Mitochondrial complex II deficiency, nuclear type 1; Dilated cardiomyopathy 1GG; Paragangliomas 5; Neurodegeneration with ataxia and late-onset optic atrophy
Mitochondrial complex II deficiency, nuclear type 1; Paragangliomas 5
Neoplasm of brain
Oligodendroglioma
Paragangliomas 2
Paragangliomas 4
Paragangliomas 4; Pheochromocytoma
Paragangliomas 5
Pediatric high-grade glioma
Pineoblastoma
Pituitary carcinoma
Rhabdoid tumor predisposition syndrome 2
Rhabdoid tumor predisposition syndrome 2; Intellectual disability, autosomal dominant 16
Supratentorial primitive neuroectodermal tumor

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Minimum conflict level: Report conflict between different conditions
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

Total variants: 18

Download table as spreadsheet

HGVS	dbSNP	gnomAD frequency
NM_000548.5(TSC2):c.482-3C>T	rs1800720	0.12927
NM_002412.5(MGMT):c.-28C>T	rs16906252	0.05114
NM_003000.3(SDHB):c.158G>A (p.Gly53Glu)	rs34916635	0.00041
NM_004168.4(SDHA):c.91C>T (p.Arg31Ter)	rs142441643	0.00025
NM_004168.4(SDHA):c.1055G>A (p.Arg352Gln)	rs199844384	0.00009
NM_004168.4(SDHA):c.313-7T>C	rs201972549	0.00004
NM_004168.4(SDHA):c.1652C>T (p.Thr551Met)	rs181238392	0.00002
NM_004168.4(SDHA):c.1679C>T (p.Thr560Met)	rs775350508	0.00002
NM_004168.4(SDHA):c.1099C>G (p.Gln367Glu)	rs780941330	0.00001
NM_005896.4(IDH1):c.395G>A (p.Arg132His)	rs121913500	0.00001
NM_000059.4(BRCA2):c.8817_8820del (p.Lys2939fs)	rs397508010
NM_000314.8(PTEN):c.697C>T (p.Arg233Ter)	rs121909219
NM_003072.5(SMARCA4):c.4781A>G (p.Lys1594Arg)	rs1555796197
NM_004168.4(SDHA):c.1012del (p.Ala338fs)	rs1295239305
NM_004168.4(SDHA):c.245_252del (p.Glu82fs)	rs1734890180
NM_004168.4(SDHA):c.456+3_456+4delinsCT	rs1734966566
NM_017841.4(SDHAF2):c.232G>A (p.Gly78Arg)	rs113560320
NM_017841.4(SDHAF2):c.232G>C (p.Gly78Arg)

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