ClinVar Miner

List of variants reported as likely pathogenic for central nervous system cancer by Baylor Genetics

Included ClinVar conditions (49):

Adrenocortical carcinoma, hereditary; Familial cancer of breast; Glioma susceptibility 1; Bone osteosarcoma; Li-Fraumeni syndrome 1; Nasopharyngeal carcinoma; Carcinoma of pancreas; Choroid plexus papilloma; Basal cell carcinoma, susceptibility to, 7; Hepatocellular carcinoma; Colorectal cancer; Bone marrow failure syndrome 5
Adrenocortical carcinoma, hereditary; Familial cancer of breast; Glioma susceptibility 1; Bone osteosarcoma; Li-Fraumeni syndrome 1; Nasopharyngeal carcinoma; Carcinoma of pancreas; Choroid plexus papilloma; Carcinoma of colon; Basal cell carcinoma, susceptibility to, 7; Hepatocellular carcinoma
Adrenocortical carcinoma, hereditary; Familial cancer of breast; Glioma susceptibility 1; Bone osteosarcoma; Li-Fraumeni syndrome 1; Nasopharyngeal carcinoma; Choroid plexus papilloma; Basal cell carcinoma, susceptibility to, 7; Familial pancreatic carcinoma; Hepatocellular carcinoma; Colorectal cancer; Bone marrow failure syndrome 5
Adrenocortical carcinoma, hereditary; Glioma susceptibility 1; Li-Fraumeni syndrome 1; Choroid plexus papilloma; Basal cell carcinoma, susceptibility to, 7; Colorectal cancer; Bone marrow failure syndrome 5
Adult spinal cord ependymoma
Anaplastic ependymoma
Anaplastic oligodendroglioma
Astrocytoma, anaplastic
Astrocytoma, anaplastic; Pleomorphic xanthoastrocytoma
Atypical teratoid rhabdoid tumor
Brainstem glioma
Carney-Stratakis syndrome; Paragangliomas 4; Pheochromocytoma
Childhood kidney cell carcinoma; High-grade astrocytoma with piloid features
Choroid plexus carcinoma
Choroid plexus papilloma
Diffuse intrinsic pontine glioma
Diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Glioma susceptibility 3; Familial prostate cancer
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Malignant tumor of prostate; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Malignant tumor of prostate; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3; Melanoma, cutaneous malignant, susceptibility to, 1
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Malignant tumor of prostate; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3; Tracheoesophageal fistula
Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3; Familial prostate cancer
Gastrointestinal stromal tumor; Carney-Stratakis syndrome; Paragangliomas 4; Pheochromocytoma; Cowden syndrome 1
Gastrointestinal stromal tumor; Carney-Stratakis syndrome; Paragangliomas 4; Pheochromocytoma; Mitochondrial complex 2 deficiency, nuclear type 4
Gastrointestinal stromal tumor; Mitochondrial complex II deficiency, nuclear type 1; Hereditary pheochromocytoma-paraganglioma; Paragangliomas 5
Gastrointestinal stromal tumor; Paragangliomas 4; Pheochromocytoma
Glioblastoma
Glioblastoma multiforme
Glioma susceptibility 3
Granular cell cancer
High-grade astrocytoma with piloid features
Leigh syndrome; Mitochondrial complex II deficiency, nuclear type 1; Dilated cardiomyopathy 1GG; Paragangliomas 5
Malignant glioma
Malignant neoplasm of brain
Mitochondrial complex II deficiency, nuclear type 1; Dilated cardiomyopathy 1GG; Paragangliomas 5
Mitochondrial complex II deficiency, nuclear type 1; Dilated cardiomyopathy 1GG; Paragangliomas 5; Neurodegeneration with ataxia and late-onset optic atrophy
Mitochondrial complex II deficiency, nuclear type 1; Paragangliomas 5
Neoplasm of brain
Oligodendroglioma
Paragangliomas 2
Paragangliomas 4
Paragangliomas 4; Pheochromocytoma
Paragangliomas 5
Pediatric high-grade glioma
Pineoblastoma
Pituitary carcinoma
Rhabdoid tumor predisposition syndrome 2
Rhabdoid tumor predisposition syndrome 2; Intellectual disability, autosomal dominant 16
Supratentorial primitive neuroectodermal tumor

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Minimum conflict level: Report conflict between different conditions
Show significances as they were submitted (without aggregation into standard terms)
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Total variants: 15

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HGVS	dbSNP	gnomAD frequency
NM_017841.4(SDHAF2):c.260+3A>G	rs1445986287	0.00001
NM_017841.4(SDHAF2):c.371-2A>G	rs375280597	0.00001
NM_003072.5(SMARCA4):c.1064del (p.Ile355fs)
NM_003072.5(SMARCA4):c.1408C>T (p.Gln470Ter)	rs1555757738
NM_003072.5(SMARCA4):c.1752_1755del (p.Lys585fs)	rs2087041072
NM_003072.5(SMARCA4):c.2062A>T (p.Lys688Ter)
NM_003072.5(SMARCA4):c.229G>T (p.Glu77Ter)	rs1568419675
NM_003072.5(SMARCA4):c.3774+2T>G
NM_003072.5(SMARCA4):c.4220del (p.Lys1407fs)
NM_017841.4(SDHAF2):c.229_230del (p.Arg77fs)	rs1336819076
NM_017841.4(SDHAF2):c.267del (p.Phe89fs)	rs766035180
NM_017841.4(SDHAF2):c.301C>T (p.Gln101Ter)
NM_017841.4(SDHAF2):c.305_306insA (p.Asn103fs)	rs753554501
NM_017841.4(SDHAF2):c.355dup (p.Tyr119fs)	rs1456129845
NM_017841.4(SDHAF2):c.406del (p.Val136fs)

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