ClinVar Miner

List of variants studied for epilepsy by Genomic Research Center, Shahid Beheshti University of Medical Sciences

Included ClinVar conditions (438):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 72
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HGVS dbSNP gnomAD frequency
NM_001365536.1(SCN9A):c.3767A>G (p.Asn1256Ser) rs141268327 0.00496
NM_014687.4(RUBCN):c.593C>T (p.Pro198Leu) rs145980033 0.00420
NM_001365536.1(SCN9A):c.1997A>G (p.Lys666Arg) rs121908919 0.00180
NM_014467.3(SRPX2):c.1030C>A (p.Leu344Ile) rs149051060 0.00145
NM_001199107.2(TBC1D24):c.641G>A (p.Arg214His) rs200324356 0.00068
NM_001042432.2(CLN3):c.242C>T (p.Pro81Leu) rs137906617 0.00029
NM_015192.4(PLCB1):c.3337-69G>A rs45541432 0.00021
NM_203446.3(SYNJ1):c.1906G>A (p.Val636Ile) rs373820739 0.00007
NM_001371727.1(GABRB2):c.1061G>A (p.Arg354His) rs371217448 0.00006
NM_001365536.1(SCN9A):c.1135A>G (p.Met379Val) rs544004654 0.00005
NM_005076.5(CNTN2):c.1075C>A (p.Arg359Ser) rs371816961 0.00004
NM_020822.3(KCNT1):c.3059G>A (p.Arg1020His) rs373365707 0.00004
NM_000836.4(GRIN2D):c.2308G>A (p.Asp770Asn) rs775962298 0.00003
NM_001330260.2(SCN8A):c.3267C>A (p.Asn1089Lys) rs761386688 0.00002
NM_020822.3(KCNT1):c.2044C>T (p.Arg682Trp) rs750994724 0.00002
NM_000748.3(CHRNB2):c.1291G>C (p.Val431Leu) rs1064796396 0.00001
NM_000748.3(CHRNB2):c.317G>A (p.Arg106Gln) rs779199533 0.00001
NM_001040142.2(SCN2A):c.1837G>A (p.Val613Met) rs769069833 0.00001
NM_001242896.3(DEPDC5):c.2527C>T (p.Arg843Ter) rs541024038 0.00001
NM_001365536.1(SCN9A):c.1285C>T (p.Arg429Cys) rs763256222 0.00001
NM_003165.6(STXBP1):c.1756G>A (p.Asp586Asn) rs746172968 0.00001
NM_006279.5(ST3GAL3):c.631G>A (p.Glu211Lys) rs1448699021 0.00001
NM_020771.4(HACE1):c.1396C>T (p.Gln466Ter) rs1337798545 0.00001
NM_203446.3(SYNJ1):c.3601C>T (p.Arg1201Cys) rs114994257 0.00001
NM_000744.7(CHRNA4):c.496A>T (p.Thr166Ser) rs1568810867
NM_000812.4(GABRB1):c.307C>T (p.Pro103Ser) rs775749394
NM_000814.6(GABRB3):c.841A>G (p.Thr281Ala) rs1555401442
NM_001099922.3(ALG13):c.2754ACC[14] (p.Pro945del) rs750710267
NM_001099922.3(ALG13):c.2797CCT[11] (p.Pro944_Pro945del) rs56717389
NM_001099922.3(ALG13):c.880C>T (p.Pro294Ser) rs753556936
NM_001110792.2(MECP2):c.33AGG[6] (p.Gly16dup) rs587783744
NM_001110792.2(MECP2):c.6CGC[8] (p.Ala7_Ala8dup) rs398123566
NM_001127222.2(CACNA1A):c.3310_3315dup (p.Gly1104_Pro1105dup) rs776584949
NM_001127222.2(CACNA1A):c.4174G>A (p.Val1392Met) rs794727411
NM_001127222.2(CACNA1A):c.5735G>A (p.Gly1912Glu) rs2054931821
NM_001127222.2(CACNA1A):c.6630CCA[5] (p.His2216_His2219del) rs759331923
NM_001127222.2(CACNA1A):c.7124C>A (p.Ala2375Asp) rs2054617959
NM_001130438.3(SPTAN1):c.1371G>T (p.Glu457Asp) rs1589203624
NM_001134407.3(GRIN2A):c.2929A>C (p.Asn977His) rs776506065
NM_001165963.4(SCN1A):c.2020G>C (p.Asp674His) rs1574214734
NM_001165963.4(SCN1A):c.2416-1G>A rs1553542421
NM_001165963.4(SCN1A):c.4525A>C (p.Asn1509His) rs1690003122
NM_001165963.4(SCN1A):c.5501C>T (p.Ala1834Val) rs780809852
NM_001271.4(CHD2):c.4297A>G (p.Lys1433Glu) rs1567160905
NM_001323289.2(CDKL5):c.1094G>C (p.Ser365Thr) rs1279388510
NM_001323289.2(CDKL5):c.173T>A (p.Leu58Ter) rs875989950
NM_001323289.2(CDKL5):c.2452_2459del (p.Pro818fs) rs1555954737
NM_001365999.1(SZT2):c.4343G>A (p.Arg1448His) rs775153972
NM_001378457.1(DMXL2):c.4784-1G>A
NM_001690.4(ATP6V1A):c.1720A>G (p.Met574Val)
NM_004519.4(KCNQ3):c.1720C>T (p.Pro574Ser) rs74582884
NM_005249.5(FOXG1):c.563C>A (p.Ala188Glu) rs587783638
NM_005660.3(SLC35A2):c.1066_1067insGCCTCT (p.Ala355_Ser356insCysLeu) rs1557042706
NM_005765.3(ATP6AP2):c.452T>C (p.Leu151Ser)
NM_006277.3(ITSN2):c.4208A>G (p.Asp1403Gly) rs1553340826
NM_006545.5(NPRL2):c.602A>C (p.Asp201Ala) rs202157450
NM_006586.5(CNPY3):c.50TGC[14] (p.Leu25_Pro26insLeuLeuLeuLeuLeu)
NM_006772.3(SYNGAP1):c.1544G>A (p.Arg515His) rs1294935709
NM_006772.3(SYNGAP1):c.1998G>C (p.Glu666Asp) rs1561787401
NM_014467.3(SRPX2):c.1183C>T (p.Gln395Ter) rs771849296
NM_015192.4(PLCB1):c.1940G>T (p.Gly647Val) rs1555786704
NM_020988.3(GNAO1):c.119G>T (p.Gly40Val) rs886041766
NM_021072.4(HCN1):c.1753A>T (p.Thr585Ser) rs1561081327
NM_021267.5(CERS1):c.274C>T (p.Gln92Ter) rs561672108
NM_031844.3(HNRNPU):c.133G>C (p.Glu45Gln) rs1680938345
NM_031844.3(HNRNPU):c.651_660del (p.Gly218fs) rs779453109
NM_033453.4(ITPA):c.489-1G>T
NM_139058.3(ARX):c.1253C>G (p.Pro418Arg) rs2048682725
NM_152743.4(BRAT1):c.393_422del (p.Gln132_Ala141del) rs1562582216
NM_153033.5(KCTD7):c.677G>C (p.Cys226Ser) rs1554300943
NM_172107.4(KCNQ2):c.1678C>T (p.Arg560Trp) rs773171451
NM_172107.4(KCNQ2):c.794C>T (p.Ala265Val) rs587777219

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