List of variants in gene MAGT1 studied for immune system disorder

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
		ClinVar version:

Total variants: 161

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HGVS	dbSNP	gnomAD frequency
NM_001367916.1(MAGT1):c.673-16T>C	rs140957691	0.03076
NM_001367916.1(MAGT1):c.651T>A (p.Thr217=)	rs61732679	0.01635
NM_001367916.1(MAGT1):c.932T>G (p.Val311Gly)	rs145245774	0.00119
NM_032121.5(MAGT1):c.67G>A (p.Val23Ile)	rs182757967	0.00049
NM_032121.5(MAGT1):c.3G>A (p.Met1Ile)	rs185325713	0.00039
NM_001367916.1(MAGT1):c.103-17C>T	rs782234408	0.00024
NM_001367916.1(MAGT1):c.532-12C>G	rs781848524	0.00015
NM_001367916.1(MAGT1):c.511G>A (p.Ala171Thr)	rs141774769	0.00014
NM_001367916.1(MAGT1):c.207G>A (p.Pro69=)	rs782428049	0.00012
NM_032121.5(MAGT1):c.58C>T (p.Arg20Trp)	rs370329684	0.00012
NM_001367916.1(MAGT1):c.391-12G>A	rs782752973	0.00010
NM_001367916.1(MAGT1):c.192T>C (p.Leu64=)	rs189513206	0.00008
NM_001367916.1(MAGT1):c.763-14T>G	rs782170645	0.00008
NM_001367916.1(MAGT1):c.880A>G (p.Met294Val)	rs374143885	0.00008
NM_001367916.1(MAGT1):c.273-5T>C	rs371338746	0.00007
NM_001367916.1(MAGT1):c.390+6A>G	rs782066955	0.00007
NM_001367916.1(MAGT1):c.449G>A (p.Arg150Gln)	rs1032635187	0.00007
NM_001367916.1(MAGT1):c.272+13A>G	rs782567093	0.00004
NM_032121.5(MAGT1):c.31T>G (p.Phe11Val)	rs913458526	0.00004
NM_001367916.1(MAGT1):c.342A>T (p.Ile114=)	rs368934480	0.00003
NM_001367916.1(MAGT1):c.219C>T (p.Ser73=)	rs183592456	0.00002
NM_001367916.1(MAGT1):c.265G>A (p.Val89Ile)	rs782335487	0.00002
NM_001367916.1(MAGT1):c.272+18G>A	rs782342148	0.00002
NM_001367916.1(MAGT1):c.272+8C>T	rs373819700	0.00002
NM_001367916.1(MAGT1):c.672+19A>G	rs549144446	0.00002
NM_001367916.1(MAGT1):c.753G>A (p.Thr251=)	rs374493047	0.00002
NM_001367916.1(MAGT1):c.771C>T (p.Ile257=)	rs782533209	0.00002
NM_032121.5(MAGT1):c.27C>T (p.Cys9=)	rs782341239	0.00002
NM_001367916.1(MAGT1):c.154C>T (p.Pro52Ser)	rs1402080033	0.00001
NM_001367916.1(MAGT1):c.160A>G (p.Ile54Val)	rs369665000	0.00001
NM_001367916.1(MAGT1):c.478G>A (p.Gly160Ser)	rs1557216098	0.00001
NM_001367916.1(MAGT1):c.510C>T (p.Ile170=)	rs1387470785	0.00001
NM_001367916.1(MAGT1):c.583C>T (p.Leu195Phe)	rs782783057	0.00001
NM_001367916.1(MAGT1):c.595A>T (p.Ile199Phe)	rs1191465689	0.00001
NM_001367916.1(MAGT1):c.596T>C (p.Ile199Thr)	rs1426800096	0.00001
NM_001367916.1(MAGT1):c.604C>T (p.Leu202Phe)	rs782090522	0.00001
NM_001367916.1(MAGT1):c.611A>G (p.Tyr204Cys)	rs1557216034	0.00001
NM_001367916.1(MAGT1):c.763-10T>A	rs1557215733	0.00001
NM_001367916.1(MAGT1):c.849G>A (p.Met283Ile)	rs941882099	0.00001
NM_001367916.1(MAGT1):c.870T>C (p.Ala290=)	rs1557214380	0.00001
NC_000023.10:g.(?_77084697)_(77131114_?)del
NC_000023.10:g.(?_77084697)_(77131114_?)dup
NC_000023.10:g.(?_77084717)_(77086412_?)del
NC_000023.10:g.(?_77084717)_(77096837_?)del
NC_000023.10:g.(?_77084717)_(77131114_?)dup
NC_000023.10:g.(?_77086282)_(77086412_?)del
NC_000023.10:g.(?_77086282)_(77131114_?)dup
NC_000023.10:g.(?_77126285)_(77126442_?)del
NC_000023.10:g.(?_77150786)_(77151023_?)dup
NM_001367916.1(MAGT1):c.-24C>G	rs2077096166
NM_001367916.1(MAGT1):c.103-16A>G
NM_001367916.1(MAGT1):c.103-19C>G
NM_001367916.1(MAGT1):c.127C>T (p.Gln43Ter)	rs1557217723
NM_001367916.1(MAGT1):c.133A>T (p.Met45Leu)
NM_001367916.1(MAGT1):c.148A>G (p.Lys50Glu)	rs2077031173
NM_001367916.1(MAGT1):c.184C>T (p.Arg62Cys)
NM_001367916.1(MAGT1):c.185G>A (p.Arg62His)
NM_001367916.1(MAGT1):c.216C>T (p.Tyr72=)
NM_001367916.1(MAGT1):c.220G>A (p.Val74Ile)
NM_001367916.1(MAGT1):c.224T>C (p.Ile75Thr)
NM_001367916.1(MAGT1):c.272+17C>T
NM_001367916.1(MAGT1):c.272+1G>C	rs2077030784
NM_001367916.1(MAGT1):c.273-18G>A
NM_001367916.1(MAGT1):c.273-18G>T
NM_001367916.1(MAGT1):c.279T>C (p.Ala93=)
NM_001367916.1(MAGT1):c.297C>G (p.Ile99Met)
NM_001367916.1(MAGT1):c.313C>T (p.Arg105Ter)	rs387906724
NM_001367916.1(MAGT1):c.318C>A (p.Tyr106Ter)	rs2077018821
NM_001367916.1(MAGT1):c.341T>C (p.Ile114Thr)	rs2149023680
NM_001367916.1(MAGT1):c.348dup (p.Ala117fs)	rs1569548146
NM_001367916.1(MAGT1):c.379G>A (p.Val127Ile)
NM_001367916.1(MAGT1):c.387G>A (p.Gln129=)
NM_001367916.1(MAGT1):c.391-12G>C	rs782752973
NM_001367916.1(MAGT1):c.391-15C>T	rs2149018483
NM_001367916.1(MAGT1):c.397A>T (p.Met133Leu)	rs782043620
NM_001367916.1(MAGT1):c.399G>A (p.Met133Ile)	rs2149018477
NM_001367916.1(MAGT1):c.399del (p.Met133fs)	rs1603361811
NM_001367916.1(MAGT1):c.405A>G (p.Ser135=)
NM_001367916.1(MAGT1):c.411A>G (p.Pro137=)
NM_001367916.1(MAGT1):c.416T>A (p.Phe139Tyr)
NM_001367916.1(MAGT1):c.426T>C (p.Phe142=)
NM_001367916.1(MAGT1):c.431C>T (p.Ala144Val)	rs2076984239
NM_001367916.1(MAGT1):c.459dup (p.Tyr154fs)	rs1603361804
NM_001367916.1(MAGT1):c.462T>A (p.Tyr154Ter)
NM_001367916.1(MAGT1):c.468dup (p.Gln157fs)
NM_001367916.1(MAGT1):c.476G>A (p.Arg159Gln)
NM_001367916.1(MAGT1):c.480T>C (p.Gly160=)	rs1603361797
NM_001367916.1(MAGT1):c.484dup (p.Ser162fs)	rs2149018434
NM_001367916.1(MAGT1):c.490G>T (p.Glu164Ter)	rs2149018425
NM_001367916.1(MAGT1):c.502C>T (p.Arg168Trp)	rs372142118
NM_001367916.1(MAGT1):c.502del (p.Arg168fs)	rs1603361795
NM_001367916.1(MAGT1):c.507G>A (p.Trp169Ter)	rs2149018410
NM_001367916.1(MAGT1):c.513C>T (p.Ala171=)
NM_001367916.1(MAGT1):c.514G>A (p.Asp172Asn)
NM_001367916.1(MAGT1):c.530A>G (p.Asn177Ser)
NM_001367916.1(MAGT1):c.531+16A>T	rs2149018390
NM_001367916.1(MAGT1):c.531+20A>C	rs2149018388
NM_001367916.1(MAGT1):c.532-20T>G
NM_001367916.1(MAGT1):c.563G>T (p.Gly188Val)
NM_001367916.1(MAGT1):c.574T>C (p.Leu192=)
NM_001367916.1(MAGT1):c.607_610del (p.Val203fs)
NM_001367916.1(MAGT1):c.616C>T (p.Arg206Ter)	rs879989957
NM_001367916.1(MAGT1):c.628A>G (p.Met210Val)
NM_001367916.1(MAGT1):c.633A>G (p.Glu211=)
NM_001367916.1(MAGT1):c.641_642insGA (p.Phe214fs)	rs1603361729
NM_001367916.1(MAGT1):c.644A>G (p.Asn215Ser)	rs2149018211
NM_001367916.1(MAGT1):c.673-10T>C	rs2076979441
NM_001367916.1(MAGT1):c.673-1G>A	rs2149017840
NM_001367916.1(MAGT1):c.676_680del (p.Phe226fs)	rs1603361606
NM_001367916.1(MAGT1):c.678dup (p.Val227fs)	rs2149017839
NM_001367916.1(MAGT1):c.695C>A (p.Ser232Tyr)	rs2149017832
NM_001367916.1(MAGT1):c.702A>G (p.Gln234=)
NM_001367916.1(MAGT1):c.707G>A (p.Trp236Ter)	rs2149017828
NM_001367916.1(MAGT1):c.736C>T (p.His246Tyr)	rs2076979344
NM_001367916.1(MAGT1):c.738dup (p.Lys247Ter)
NM_001367916.1(MAGT1):c.751_752dup (p.Gly252fs)
NM_001367916.1(MAGT1):c.755G>A (p.Gly252Glu)
NM_001367916.1(MAGT1):c.756A>G (p.Gly252=)
NM_001367916.1(MAGT1):c.762+16G>A
NM_001367916.1(MAGT1):c.762+1G>A
NM_001367916.1(MAGT1):c.763-18_763-17del
NM_001367916.1(MAGT1):c.764A>G (p.Asn255Ser)
NM_001367916.1(MAGT1):c.771C>A (p.Ile257=)	rs782533209
NM_001367916.1(MAGT1):c.780C>A (p.Ser260Arg)
NM_001367916.1(MAGT1):c.816T>C (p.Val272=)
NM_001367916.1(MAGT1):c.825T>C (p.Phe275=)
NM_001367916.1(MAGT1):c.826+18G>A
NM_001367916.1(MAGT1):c.826_826+9del	rs1603361427
NM_001367916.1(MAGT1):c.827-16A>G
NM_001367916.1(MAGT1):c.827-1_838del	rs1603359848
NM_001367916.1(MAGT1):c.827-7T>G	rs782176437
NM_001367916.1(MAGT1):c.842T>G (p.Leu281Ter)	rs1569547878
NM_001367916.1(MAGT1):c.853C>T (p.Leu285Phe)	rs2149012480
NM_001367916.1(MAGT1):c.884A>T (p.Asp295Val)
NM_001367916.1(MAGT1):c.888T>C (p.Ile296=)
NM_001367916.1(MAGT1):c.895C>T (p.Arg299Ter)	rs1569547876
NM_001367916.1(MAGT1):c.896G>A (p.Arg299Gln)
NM_001367916.1(MAGT1):c.901+11T>G
NM_001367916.1(MAGT1):c.901+8A>G
NM_001367916.1(MAGT1):c.902-6C>G	rs2149008276
NM_001367916.1(MAGT1):c.904A>G (p.Met302Val)
NM_001367916.1(MAGT1):c.909T>A (p.Cys303Ter)	rs2149008270
NM_001367916.1(MAGT1):c.927TGT[1] (p.Val311del)	rs2076895612
NM_001367916.1(MAGT1):c.945T>C (p.Ser315=)
NM_001367916.1(MAGT1):c.948G>A (p.Trp316Ter)	rs2076895533
NM_001367916.1(MAGT1):c.949A>G (p.Met317Val)
NM_001367916.1(MAGT1):c.951G>T (p.Met317Ile)
NM_001367916.1(MAGT1):c.958A>G (p.Ile320Val)	rs2076895484
NM_001367916.1(MAGT1):c.977A>G (p.His326Arg)
NM_001367916.1(MAGT1):c.992+1G>A	rs1557213306
NM_001367916.1(MAGT1):c.992+3A>G	rs2149008230
NM_032121.5(MAGT1):c.11G>A (p.Gly4Asp)
NM_032121.5(MAGT1):c.20C>T (p.Pro7Leu)
NM_032121.5(MAGT1):c.26G>A (p.Cys9Tyr)
NM_032121.5(MAGT1):c.3G>C (p.Met1Ile)	rs185325713
NM_032121.5(MAGT1):c.44C>T (p.Thr15Ile)
NM_032121.5(MAGT1):c.56G>T (p.Ser19Ile)	rs2077096393
NM_032121.5(MAGT1):c.58C>A (p.Arg20=)	rs370329684
NM_032121.5(MAGT1):c.64A>C (p.Lys22Gln)
NM_032121.5(MAGT1):c.65_66del (p.Lys22fs)	rs782474570
NM_032121.5(MAGT1):c.71C>A (p.Ser24Ter)	rs372603691

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