List of variants in gene MALT1 reported as likely benign for immune system disorder

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

Total variants: 149

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HGVS	dbSNP	gnomAD frequency
NM_006785.4(MALT1):c.1223-20_1223-17del	rs558928879	0.00553
NM_006785.4(MALT1):c.219C>G (p.Asp73Glu)	rs111255512	0.00275
NM_006785.4(MALT1):c.1921A>G (p.Ile641Val)	rs35533328	0.00179
NM_006785.4(MALT1):c.677A>G (p.Lys226Arg)	rs149988025	0.00101
NM_006785.4(MALT1):c.649+9C>T	rs200919386	0.00088
NM_006785.4(MALT1):c.1912-17A>G	rs368071338	0.00061
NM_006785.4(MALT1):c.1401-6A>C	rs181901226	0.00046
NM_006785.4(MALT1):c.2370C>T (p.Phe790=)	rs200126163	0.00031
NM_006785.4(MALT1):c.502C>A (p.Pro168Thr)	rs560703292	0.00029
NM_006785.4(MALT1):c.1449C>T (p.Thr483=)	rs150095121	0.00028
NM_006785.4(MALT1):c.986-5T>A	rs545727809	0.00020
NM_006785.4(MALT1):c.1223-21_1223-18del	rs767490681	0.00014
NM_006785.4(MALT1):c.1282G>A (p.Val428Ile)	rs140664950	0.00011
NM_006785.4(MALT1):c.1578T>C (p.Thr526=)	rs570727083	0.00010
NM_006785.4(MALT1):c.1164A>G (p.Glu388=)	rs200254991	0.00006
NM_006785.4(MALT1):c.1257T>C (p.Asn419=)	rs779308482	0.00005
NM_006785.4(MALT1):c.1018+15A>G	rs768104703	0.00004
NM_006785.4(MALT1):c.210-19T>C	rs200992488	0.00004
NM_006785.4(MALT1):c.210-7C>T	rs768986231	0.00004
NM_006785.4(MALT1):c.2184A>G (p.Gln728=)	rs750239793	0.00004
NM_006785.4(MALT1):c.498+11A>C	rs755962287	0.00004
NM_006785.4(MALT1):c.1302T>C (p.Tyr434=)	rs202104175	0.00003
NM_006785.4(MALT1):c.1893C>T (p.Tyr631=)	rs141271271	0.00003
NM_006785.4(MALT1):c.2208T>G (p.Pro736=)	rs752025790	0.00003
NM_006785.4(MALT1):c.2220T>A (p.Ser740=)	rs781598781	0.00003
NM_006785.4(MALT1):c.822A>G (p.Leu274=)	rs762795672	0.00003
NM_006785.4(MALT1):c.1019-16T>G	rs1555687704	0.00002
NM_006785.4(MALT1):c.1475+17T>A	rs775414732	0.00002
NM_006785.4(MALT1):c.2223A>G (p.Ala741=)	rs903593943	0.00002
NM_006785.4(MALT1):c.663C>T (p.Gly221=)	rs374931065	0.00002
NM_006785.4(MALT1):c.828+19G>C	rs1025591481	0.00002
NM_006785.4(MALT1):c.828+9T>C	rs750591035	0.00002
NM_006785.4(MALT1):c.1101C>T (p.Tyr367=)	rs764868894	0.00001
NM_006785.4(MALT1):c.1236T>C (p.Tyr412=)	rs750258421	0.00001
NM_006785.4(MALT1):c.1281C>T (p.Pro427=)	rs199843812	0.00001
NM_006785.4(MALT1):c.1293A>G (p.Pro431=)	rs1357458047	0.00001
NM_006785.4(MALT1):c.1374G>A (p.Val458=)	rs760569041	0.00001
NM_006785.4(MALT1):c.1476-9A>G	rs754321602	0.00001
NM_006785.4(MALT1):c.1753+16T>A	rs1568155848	0.00001
NM_006785.4(MALT1):c.2025G>A (p.Leu675=)	rs1235494464	0.00001
NM_006785.4(MALT1):c.210-16T>C	rs776534946	0.00001
NM_006785.4(MALT1):c.264C>G (p.Pro88=)	rs923556568	0.00001
NM_006785.4(MALT1):c.279G>A (p.Leu93=)	rs761317500	0.00001
NM_006785.4(MALT1):c.376+13C>T	rs375662132	0.00001
NM_006785.4(MALT1):c.498+10T>A	rs1038295197	0.00001
NM_006785.4(MALT1):c.649+10G>A	rs770349160	0.00001
NM_006785.4(MALT1):c.798A>G (p.Pro266=)	rs376106734	0.00001
NM_006785.4(MALT1):c.813C>T (p.Thr271=)	rs752497631	0.00001
NM_006785.4(MALT1):c.837T>C (p.Tyr279=)	rs762659498	0.00001
NM_006785.4(MALT1):c.959-11C>A	rs368656387	0.00001
NM_006785.4(MALT1):c.986-6G>A	rs1243361613	0.00001
NM_006785.4(MALT1):c.1008C>T (p.Asp336=)
NM_006785.4(MALT1):c.1019-5dup
NM_006785.4(MALT1):c.1041G>A (p.Leu347=)
NM_006785.4(MALT1):c.1059C>T (p.Tyr353=)
NM_006785.4(MALT1):c.1125G>A (p.Gln375=)
NM_006785.4(MALT1):c.1158T>C (p.Leu386=)
NM_006785.4(MALT1):c.1222+15A>C
NM_006785.4(MALT1):c.1223-17A>G
NM_006785.4(MALT1):c.1223-18T>C
NM_006785.4(MALT1):c.1223-20_1223-18del
NM_006785.4(MALT1):c.1266C>T (p.Asn422=)
NM_006785.4(MALT1):c.1296T>C (p.Asn432=)
NM_006785.4(MALT1):c.1381T>C (p.Leu461=)
NM_006785.4(MALT1):c.1401-15G>A	rs371051170
NM_006785.4(MALT1):c.1401-15G>T	rs371051170
NM_006785.4(MALT1):c.1401-17C>G
NM_006785.4(MALT1):c.1401-17C>T
NM_006785.4(MALT1):c.1401-20C>T	rs1279846983
NM_006785.4(MALT1):c.1401-26_1401-17del
NM_006785.4(MALT1):c.1428C>T (p.Ile476=)
NM_006785.4(MALT1):c.1476-17C>T	rs2055207631
NM_006785.4(MALT1):c.1476-20C>T
NM_006785.4(MALT1):c.1539A>G (p.Lys513=)	rs2144466195
NM_006785.4(MALT1):c.1603+11_1603+17del	rs1474855583
NM_006785.4(MALT1):c.1603+16A>G
NM_006785.4(MALT1):c.1604-11del
NM_006785.4(MALT1):c.1604-7C>A
NM_006785.4(MALT1):c.1604-8T>A	rs2144484576
NM_006785.4(MALT1):c.1635A>G (p.Lys545=)
NM_006785.4(MALT1):c.1642C>T (p.Leu548=)
NM_006785.4(MALT1):c.1647G>A (p.Glu549=)
NM_006785.4(MALT1):c.1662A>G (p.Leu554=)
NM_006785.4(MALT1):c.1753+10A>C	rs759478135
NM_006785.4(MALT1):c.1753+15A>G
NM_006785.4(MALT1):c.1754-14T>C
NM_006785.4(MALT1):c.1754-15A>T	rs2144488842
NM_006785.4(MALT1):c.1754-18C>G
NM_006785.4(MALT1):c.1754-20T>A
NM_006785.4(MALT1):c.1754-8T>C
NM_006785.4(MALT1):c.1824T>C (p.Phe608=)
NM_006785.4(MALT1):c.1839C>T (p.Ile613=)
NM_006785.4(MALT1):c.1911+14T>C	rs2144489190
NM_006785.4(MALT1):c.1912-6T>G	rs944241693
NM_006785.4(MALT1):c.1965C>G (p.Gly655=)
NM_006785.4(MALT1):c.1977A>T (p.Val659=)
NM_006785.4(MALT1):c.2037+7A>G
NM_006785.4(MALT1):c.2038-17del
NM_006785.4(MALT1):c.2038-8C>G
NM_006785.4(MALT1):c.2049C>T (p.Val683=)
NM_006785.4(MALT1):c.2067A>G (p.Ser689=)
NM_006785.4(MALT1):c.2073G>A (p.Gln691=)
NM_006785.4(MALT1):c.2079A>G (p.Ser693=)
NM_006785.4(MALT1):c.2083T>C (p.Leu695=)
NM_006785.4(MALT1):c.2085G>A (p.Leu695=)
NM_006785.4(MALT1):c.210-14T>C
NM_006785.4(MALT1):c.210-20A>G
NM_006785.4(MALT1):c.2115G>A (p.Val705=)	rs201899332
NM_006785.4(MALT1):c.2115G>C (p.Val705=)	rs201899332
NM_006785.4(MALT1):c.2133C>T (p.Leu711=)
NM_006785.4(MALT1):c.2217T>C (p.Ser739=)	rs1289087141
NM_006785.4(MALT1):c.2241A>T (p.Ala747=)	rs2144495066
NM_006785.4(MALT1):c.2310T>C (p.Asn770=)
NM_006785.4(MALT1):c.2325T>C (p.Asp775=)
NM_006785.4(MALT1):c.2385A>G (p.Ser795=)	rs2144495406
NM_006785.4(MALT1):c.2424T>A (p.Thr808=)
NM_006785.4(MALT1):c.2451C>T (p.Asp817=)	rs1602347562
NM_006785.4(MALT1):c.315A>G (p.Glu105=)
NM_006785.4(MALT1):c.366C>T (p.Leu122=)
NM_006785.4(MALT1):c.377-15_377-3del
NM_006785.4(MALT1):c.377-16T>C
NM_006785.4(MALT1):c.377-16_377-3del	rs574285957
NM_006785.4(MALT1):c.377-6T>C
NM_006785.4(MALT1):c.411A>C (p.Ala137=)	rs765476711
NM_006785.4(MALT1):c.426G>A (p.Gln142=)
NM_006785.4(MALT1):c.471A>G (p.Gln157=)
NM_006785.4(MALT1):c.499-13G>A
NM_006785.4(MALT1):c.499-18T>A
NM_006785.4(MALT1):c.499-8_499-5del	rs756815958
NM_006785.4(MALT1):c.558C>A (p.Gly186=)	rs2144361835
NM_006785.4(MALT1):c.627C>T (p.Cys209=)
NM_006785.4(MALT1):c.657T>C (p.Val219=)	rs1221032758
NM_006785.4(MALT1):c.678G>A (p.Lys226=)	rs1192402517
NM_006785.4(MALT1):c.687C>A (p.Ile229=)
NM_006785.4(MALT1):c.696A>G (p.Glu232=)
NM_006785.4(MALT1):c.702T>C (p.Thr234=)
NM_006785.4(MALT1):c.819G>A (p.Lys273=)
NM_006785.4(MALT1):c.829-20A>G
NM_006785.4(MALT1):c.829-4A>G
NM_006785.4(MALT1):c.864C>T (p.Tyr288=)
NM_006785.4(MALT1):c.873T>C (p.His291=)	rs2144388982
NM_006785.4(MALT1):c.879T>C (p.Tyr293=)	rs2144389003
NM_006785.4(MALT1):c.925+16C>T
NM_006785.4(MALT1):c.925+18A>G
NM_006785.4(MALT1):c.925+8G>A	rs1421497811
NM_006785.4(MALT1):c.958+17G>A
NM_006785.4(MALT1):c.959-17C>T	rs2144399095
NM_006785.4(MALT1):c.985+14A>G	rs2144399244
NM_006785.4(MALT1):c.986-5T>C	rs545727809

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