ClinVar Miner

List of variants studied for immune system disorder by Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein

Included ClinVar conditions (908):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 199
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HGVS dbSNP gnomAD frequency
NM_012452.3(TNFRSF13B):c.542C>A (p.Ala181Glu) rs72553883 0.00518
NM_012452.3(TNFRSF13B):c.310T>C (p.Cys104Arg) rs34557412 0.00403
NM_000065.5(C6):c.1879del (p.Asp627fs) rs61469168 0.00328
NM_000431.4(MVK):c.1129G>A (p.Val377Ile) rs28934897 0.00156
NM_001012339.3(DNAJC21):c.1186-531G>A rs112971776 0.00144
NM_024570.4(RNASEH2B):c.529G>A (p.Ala177Thr) rs75184679 0.00141
NM_000551.4(VHL):c.241C>T (p.Pro81Ser) rs104893829 0.00039
NM_001395891.1(CLASP1):c.196-567G>A rs559979281 0.00038
NM_001164277.2(SLC37A4):c.1042_1043del (p.Leu348fs) rs80356491 0.00026
NM_144687.4(NLRP12):c.857C>T (p.Pro286Leu) rs201940393 0.00024
NM_198253.3(TERT):c.1931C>T (p.Thr644Met) rs201927653 0.00023
NM_002800.5(PSMB9):c.494G>A (p.Gly165Asp) rs369359789 0.00022
NM_000271.5(NPC1):c.3019C>G (p.Pro1007Ala) rs80358257 0.00021
NM_012452.3(TNFRSF13B):c.236A>G (p.Tyr79Cys) rs72553876 0.00021
NM_012452.3(TNFRSF13B):c.515G>A (p.Cys172Tyr) rs751216929 0.00020
NR_023343.3(RNU4ATAC):n.37G>A rs756026847 0.00013
NM_000243.3(MEFV):c.2080A>G (p.Met694Val) rs61752717 0.00012
NM_012452.3(TNFRSF13B):c.512T>G (p.Leu171Arg) rs143027621 0.00012
NM_001354930.2(RIPK1):c.1934C>T (p.Thr645Met) rs116040763 0.00011
NM_012452.3(TNFRSF13B):c.797C>T (p.Thr266Ile) rs752825527 0.00011
NM_203447.4(DOCK8):c.3010C>T (p.Arg1004Trp) rs369178263 0.00011
NM_001111.5(ADAR):c.656G>C (p.Gly219Ala) rs139471471 0.00010
NM_032043.3(BRIP1):c.2392C>T (p.Arg798Ter) rs137852986 0.00010
NM_006397.3(RNASEH2A):c.746C>T (p.Ala249Val) rs758719669 0.00009
NM_182925.5(FLT4):c.1093G>A (p.Glu365Lys) rs369919880 0.00007
NM_000064.4(C3):c.193A>C (p.Lys65Gln) rs539992721 0.00005
NM_000211.5(ITGB2):c.897+1G>A rs201752283 0.00004
NM_000215.4(JAK3):c.2503A>T (p.Ser835Cys) rs201966394 0.00004
NM_001370466.1(NOD2):c.1234C>T (p.Arg412Cys) rs375201229 0.00004
NM_002185.5(IL7R):c.353G>A (p.Cys118Tyr) rs193922641 0.00004
NM_005236.3(ERCC4):c.991T>A (p.Ser331Thr) rs762052950 0.00004
NM_012452.3(TNFRSF13B):c.214C>T (p.Arg72Cys) rs375514495 0.00004
NM_002834.5(PTPN11):c.794G>A (p.Arg265Gln) rs376607329 0.00003
NM_012452.3(TNFRSF13B):c.122A>G (p.Asp41Gly) rs763197017 0.00003
NM_000448.3(RAG1):c.1420C>T (p.Arg474Cys) rs199474678 0.00002
NM_000565.4(IL6R):c.127G>A (p.Val43Met) rs757025871 0.00002
NM_004629.2(FANCG):c.1077-2A>G rs769547477 0.00002
NM_020661.4(AICDA):c.260G>C (p.Cys87Ser) rs1260264247 0.00002
NM_144687.4(NLRP12):c.2800T>C (p.Ser934Pro) rs1379257772 0.00002
NM_000022.4(ADA):c.313C>T (p.His105Tyr) rs201522960 0.00001
NM_000051.4(ATM):c.4091A>G (p.Asp1364Gly) rs751169467 0.00001
NM_000059.4(BRCA2):c.6281A>G (p.Tyr2094Cys) rs397507838 0.00001
NM_000211.5(ITGB2):c.562C>T (p.Arg188Ter) rs148877937 0.00001
NM_000211.5(ITGB2):c.814G>A (p.Asp272Asn) rs749335770 0.00001
NM_000234.3(LIG1):c.2311C>T (p.Arg771Trp) rs121434561 0.00001
NM_000431.4(MVK):c.709A>T (p.Thr237Ser) rs104895366 0.00001
NM_001065.4(TNFRSF1A):c.1256A>G (p.Glu419Gly) rs1454639907 0.00001
NM_001289125.3(IFNAR2):c.840+1G>T rs746775306 0.00001
NM_002435.3(MPI):c.652A>T (p.Lys218Ter) rs1057516424 0.00001
NM_002435.3(MPI):c.718C>T (p.Gln240Ter) rs776340315 0.00001
NM_002834.5(PTPN11):c.922A>G (p.Asn308Asp) rs28933386 0.00001
NM_003177.7(SYK):c.688G>A (p.Glu230Lys) rs200498885 0.00001
NM_003978.5(PSTPIP1):c.36+10610A>G rs2075813588 0.00001
NM_005633.4(SOS1):c.2990T>C (p.Met997Thr) rs1321926273 0.00001
NM_006767.4(LZTR1):c.-38T>A rs1459786357 0.00001
NM_006767.4(LZTR1):c.465C>G (p.Tyr155Ter) rs753295968 0.00001
NM_181523.3(PIK3R1):c.747G>C (p.Lys249Asn) rs147303522 0.00001
NC_000009.12:g.(333421_334903)del
NC_000021.9:g.(33336874_33344911)del
NC_000022.11:g.18948676_21110520del
NM_000051.4(ATM):c.2921+1G>A rs587781558
NM_000051.4(ATM):c.4695del (p.Pro1566fs) rs1057517452
NM_000061.3(BTK):c.1685G>A (p.Arg562Gln)
NM_000061.3(BTK):c.1838G>A (p.Gly613Asp) rs128621209
NM_000061.3(BTK):c.271C>T (p.Gln91Ter)
NM_000061.3(BTK):c.588+2T>C
NM_000061.3(BTK):c.83G>A (p.Arg28His) rs128620185
NM_000064.4(C3):c.3489+2T>C
NM_000073.3:c.70_80del
NM_000074.3(CD40LG):c.654C>A (p.Cys218Ter)
NM_000074.3(CD40LG):c.687T>A (p.Phe229Leu)
NM_000074.3(CD40LG):c.755G>A (p.Gly252Asp)
NM_000081.4(LYST):c.10610T>G (p.Leu3537Arg)
NM_000081.4(LYST):c.8869C>T (p.Arg2957Ter)
NM_000135.4(FANCA):c.2087G>T (p.Ser696Ile)
NM_000135.4(FANCA):c.3638_3639del (p.Pro1213fs) rs1304878514
NM_000135.4(FANCA):c.3782TCT[2] (p.Phe1263del) rs397507553
NM_000206.3(IL2RG):c.664C>T (p.Arg222Cys) rs111033618
NM_000215.4(JAK3):c.2773C>A (p.Arg925Ser) rs149452625
NM_000222.3(KIT):c.2447A>T (p.Asp816Val) rs121913507
NM_000234.3(LIG1):c.2326G>A (p.Gly776Arg)
NM_000271.5(NPC1):c.3662del (p.Phe1221fs) rs786200878
NM_000377.3(WAS):c.1270_1295del (p.Gly424fs) rs2147266901
NM_000377.3(WAS):c.1273_1318del (p.Leu425fs)
NM_000397.4(CYBB):c.47T>C (p.Leu16Pro) rs2146803094
NM_000397.4(CYBB):c.66C>G (p.Asn22Lys)
NM_000431.4(MVK):c.533C>T (p.Thr178Ile)
NM_000431.4(MVK):c.62C>T (p.Ala21Val) rs2136216750
NM_000431.4(MVK):c.79-2A>G rs1884932883
NM_000536.4(RAG2):c.104G>C (p.Gly35Ala) rs148508754
NM_000543.5(SMPD1):c.631T>C (p.Trp211Arg)
NM_000551.4(VHL):c.341-6C>G rs191201783
NM_000628.5(IL10RB):c.787C>G (p.Pro263Ala)
NM_001006658.3(CR2):c.1015G>T (p.Ala339Ser)
NM_001006658.3(CR2):c.1103G>A (p.Arg368Gln)
NM_001006658.3(CR2):c.624dup (p.Thr209fs) rs747832403
NM_001039396.2(MPEG1):c.1865T>C (p.Ile622Thr)
NM_001039396.2(MPEG1):c.746A>G (p.Asn249Ser)
NM_001065.4(TNFRSF1A):c.123T>G (p.Asp41Glu) rs104895271
NM_001167.4(XIAP):c.-32-5232_878-647del
NM_001167.4(XIAP):c.1457_1458del (p.Thr486fs) rs2053561076
NM_001167.4(XIAP):c.562G>A (p.Gly188Arg) rs1602544454
NM_001183.6(ATP6AP1):c.1036G>A (p.Glu346Lys) rs878853277
NM_001183.6(ATP6AP1):c.971+10G>A
NM_001184900.3(CARD8):c.853G>T (p.Glu285Ter) rs2146193028
NM_001199138.2(NLRC4):c.1554T>C (p.Leu518=)
NM_001199138.2(NLRC4):c.805C>T (p.His269Tyr)
NM_001243133.2(NLRP3):c.1493C>G (p.Ser498Cys)
NM_001322934.2(NFKB2):c.2531T>C (p.Val844Ala) rs1450204584
NM_001322934.2(NFKB2):c.2598T>C (p.Ser866=)
NM_001322934.2(NFKB2):c.453A>G (p.Ile151Met) rs2135430396
NM_001364905.1(LRBA):c.2259-2A>G rs2127004616
NM_001364905.1(LRBA):c.4158+1G>C
NM_001364905.1(LRBA):c.4466del (p.Pro1489fs)
NM_001364905.1(LRBA):c.8468+10del rs1454498033
NM_001370466.1(NOD2):c.-8-2532G>T
NM_001378156.1(C1QB):c.623G>A (p.Gly208Asp)
NM_001382567.1(STIM1):c.1596G>T (p.Gln532His) rs1425652473
NM_001972.4(ELANE):c.458C>A (p.Ala153Asp)
NM_001972.4(ELANE):c.731_732del (p.Ser244fs)
NM_002184.4(IL6ST):c.76G>A (p.Asp26Asn)
NM_002185.5(IL7R):c.41T>C (p.Leu14Ser) rs1759661333
NM_002435.3(MPI):c.796G>A (p.Glu266Lys) rs1595822583
NM_002524.5(NRAS):c.34G>C (p.Gly12Arg) rs121913250
NM_002661.5(PLCG2):c.105G>A (p.Lys35=) rs1910957870
NM_002834.5(PTPN11):c.1507G>A (p.Gly503Arg) rs397507545
NM_002834.5(PTPN11):c.181G>A (p.Asp61Asn) rs397507510
NM_002834.5(PTPN11):c.417G>C (p.Glu139Asp) rs397507520
NM_002880.4(RAF1):c.788T>C (p.Val263Ala) rs397516830
NM_003331.5(TYK2):c.2657C>A (p.Ala886Glu) rs764682808
NM_003467.3(CXCR4):c.175G>A (p.Val59Ile)
NM_003721.4(RFXANK):c.481del (p.Leu161fs) rs2146492780
NM_003764.4(STX11):c.429G>T (p.Met143Ile)
NM_003978.5(PSTPIP1):c.1226C>T (p.Pro409Leu)
NM_003998.4(NFKB1):c.1075G>T (p.Glu359Ter)
NM_003998.4(NFKB1):c.2745A>G (p.Gln915=) rs2149232815
NM_003998.4(NFKB1):c.407+1G>A rs1723945421
NM_004333.6(BRAF):c.770A>G (p.Gln257Arg) rs180177035
NM_004706.4(ARHGEF1):c.130A>G (p.Ser44Gly)
NM_004706.4(ARHGEF1):c.424G>A (p.Val142Met)
NM_005026.5(PIK3CD):c.3061G>A (p.Glu1021Lys) rs397518423
NM_005214.5(CTLA4):c.381C>A (p.Tyr127Ter)
NM_005214.5(CTLA4):c.410C>T (p.Pro137Leu) rs1553657429
NM_005236.3(ERCC4):c.2164A>G (p.Met722Val) rs754771000
NM_005431.2(XRCC2):c.378_381del (p.Leu126fs) rs763401560
NM_005431.2(XRCC2):c.756_758del (p.Gln252_Phe253delinsHis)
NM_005488.3(TOM1):c.1265A>T (p.Gln422Leu)
NM_005633.4(SOS1):c.508A>G (p.Lys170Glu) rs397517172
NM_005739.4(RASGRP1):c.1418_1428+3del
NM_006060.6(IKZF1):c.369G>A (p.Gly123=) rs2153470067
NM_006060.6(IKZF1):c.548G>A (p.Arg183His) rs1812172495
NM_006397.3(RNASEH2A):c.206dup (p.Thr70fs) rs549586181
NM_006432.5(NPC2):c.58G>T (p.Glu20Ter) rs80358260
NM_006767.4(LZTR1):c.1078A>T (p.Lys360Ter) rs751308379
NM_006767.4(LZTR1):c.27del (p.Gln10fs) rs587777613
NM_006767.4(LZTR1):c.742G>A (p.Gly248Arg) rs869320686
NM_006846.4(SPINK5):c.1000C>T (p.Gln334Ter) rs924297783
NM_007294.4(BRCA1):c.3769GAG[1] (p.Glu1258del) rs1057517536
NM_007315.4(STAT1):c.1894G>C (p.Glu632Gln)
NM_007315.4(STAT1):c.501A>C (p.Gln167His)
NM_007315.4(STAT1):c.800C>T (p.Ala267Val) rs387906759
NM_012448.4(STAT5B):c.424_427del (p.Leu142fs) rs2144267361
NM_012448.4(STAT5B):c.90G>A (p.Val30=) rs2144296728
NM_012481.5(IKZF3):c.470A>G (p.Gln157Arg)
NM_012481.5(IKZF3):c.982C>T (p.Pro328Ser)
NM_014009.4(FOXP3):c.716T>C (p.Val239Ala)
NM_014339.7(IL17RA):c.582G>A (p.Thr194=) rs774719700
NM_020529.3(NFKBIA):c.110T>G (p.Met37Arg) rs1566591073
NM_020661.4(AICDA):c.403C>T (p.Gln135Ter) rs2136431608
NM_020661.4(AICDA):c.45C>G (p.Phe15Leu) rs2136433359
NM_020937.4(FANCM):c.1261G>A (p.Ala421Thr)
NM_020964.3(EPG5):c.3533A>G (p.Gln1178Arg)
NM_021035.3(ZNFX1):c.2003-121C>T
NM_021035.3(ZNFX1):c.3557A>G (p.Lys1186Arg)
NM_021813.4(BACH2):c.1134G>C (p.Gln378His)
NM_021813.4(BACH2):c.801G>T (p.Lys267Asn)
NM_022168.4(IFIH1):c.742T>C (p.Ser248Pro) rs1392840230
NM_024675.4(PALB2):c.3004_3007del (p.Glu1002fs) rs786203488
NM_032043.3(BRIP1):c.1582A>T (p.Lys528Ter)
NM_032415.7(CARD11):c.2704-8T>A
NM_032444.4(SLX4):c.3850G>T (p.Val1284Leu) rs373107728
NM_032638.5(GATA2):c.1205A>G (p.Asn402Ser) rs375927513
NM_033629.6(TREX1):c.182C>A (p.Pro61Gln) rs777034646
NM_033629.6(TREX1):c.592G>A (p.Glu198Lys) rs1416519719
NM_052872.4(IL17F):c.305G>A (p.Cys102Tyr)
NM_080424.4(SP110):c.1116_1119del (p.Arg373fs) rs2148850717
NM_139276.3(STAT3):c.1842_1849delinsTGAAA (p.Lys615_Gly617delinsGluArg)
NM_139276.3(STAT3):c.2131A>G (p.Ile711Val) rs1131691937
NM_139276.3(STAT3):c.2258-2A>G
NM_144687.4(NLRP12):c.2735C>T (p.Thr912Met)
NM_148919.4(PSMB8):c.625G>C (p.Gly209Arg) rs1202502842
NM_152866.3(MS4A1):c.-279-10del
NM_181078.3(IL21R):c.800T>C (p.Ile267Thr) rs1303388360
NM_182972.3(IRF2BP2):c.124_147del (p.Asn42_Val49del)
NM_182972.3(IRF2BP2):c.1727C>T (p.Ala576Val)
NM_182972.3(IRF2BP2):c.289C>G (p.Gln97Glu) rs1672270147
NM_206937.2(LIG4):c.1271_1275del (p.Lys424fs) rs772226399
NM_206937.2(LIG4):c.1973T>C (p.Ile658Thr)
Single allele

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