ClinVar Miner

List of variants reported as pathogenic for syndromic intellectual disability by Equipe Genetique des Anomalies du Developpement, Université de Bourgogne

Included ClinVar conditions (203):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 64
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HGVS dbSNP gnomAD frequency
NM_052988.5(CDK10):c.870_871del (p.Trp291fs) rs766960979 0.00011
NM_152564.5(VPS13B):c.6657+1G>A rs180177366 0.00010
NM_052988.5(CDK10):c.609-1G>A rs767176610 0.00004
NM_015559.3(SETBP1):c.2612T>C (p.Ile871Thr) rs267607038 0.00001
NM_152564.5(VPS13B):c.10081dup (p.Thr3361fs) rs386834055 0.00001
NM_152564.5(VPS13B):c.2911C>T (p.Arg971Ter) rs120074152 0.00001
NC_000001.10:g.(?_153753742)_(153791156_?)del
NM_000489.6(ATRX):c.109C>T (p.Arg37Ter) rs122445108
NM_001003694.2(BRPF1):c.904C>T (p.Gln302Ter) rs1553695017
NM_001008537.3(NEXMIF):c.4075dup (p.Ser1359fs) rs1556016224
NM_001015877.2(PHF6):c.1024C>T (p.Arg342Ter) rs132630297
NM_001015877.2(PHF6):c.2T>C (p.Met1Thr) rs132630300
NM_001032382.2(PQBP1):c.376_377del (p.Arg126fs)
NM_001039591.3(USP9X):c.1812_1815del (p.Gln605fs) rs2147080697
NM_001079872.2(CUL4B):c.953_957del (p.Ile318fs) rs1085307760
NM_001172509.2(SATB2):c.1153del (p.Val385fs) rs2105822848
NM_001172509.2(SATB2):c.1196G>A (p.Arg399His) rs1057518190
NM_001184880.2(PCDH19):c.2143dup (p.Cys715fs)
NM_001184880.2(PCDH19):c.462C>G (p.Tyr154Ter) rs1569315876
NM_001282531.3(ADNP):c.2156dup (p.Tyr719Ter) rs1135401808
NM_001347721.2(DYRK1A):c.675_676del (p.Cys226fs) rs1601267617
NM_001347721.2(DYRK1A):c.772C>T (p.Gln258Ter) rs1555984245
NM_001349338.3(FOXP1):c.1394G>C (p.Arg465Thr) rs1553668196
NM_001353921.2(ARHGEF9):c.920G>A (p.Trp307Ter) rs1556358991
NM_001356.5(DDX3X):c.71C>A (p.Ser24Ter) rs2147340483
NM_001371928.1(AHDC1):c.2062C>T (p.Arg688Ter) rs1165205177
NM_001371928.1(AHDC1):c.2365C>T (p.Arg789Ter) rs1571235473
NM_001371928.1(AHDC1):c.944dup (p.Ala316fs) rs1571242436
NM_001429.4(EP300):c.3166C>T (p.Gln1056Ter) rs1601623271
NM_003070.5(SMARCA2):c.1585C>G (p.Leu529Val) rs1586660389
NM_003491.4(NAA10):c.384T>G (p.Phe128Leu) rs878853263
NM_003620.4(PPM1D):c.1388_1389delinsA (p.Gly463fs) rs2031555258
NM_004187.5(KDM5C):c.3749C>G (p.Ser1250Ter)
NM_004380.3(CREBBP):c.1108C>T (p.Arg370Ter) rs1384496494
NM_004380.3(CREBBP):c.6324C>G (p.Tyr2108Ter) rs199821421
NM_005359.6(SMAD4):c.1498A>G (p.Ile500Val) rs281875322
NM_005654.6(NR2F1):c.292T>C (p.Tyr98His) rs2149941592
NM_005654.6(NR2F1):c.968_969del (p.Lys323fs) rs1580360308
NM_006245.4(PPP2R5D):c.592G>A (p.Glu198Lys)
NM_006517.5(SLC16A2):c.439G>A (p.Gly147Arg) rs1602140936
NM_006950.3(SYN1):c.1001del (p.Asn334fs) rs1603051674
NM_013275.6(ANKRD11):c.2408_2412del (p.Lys803fs) rs886039902
NM_013275.6(ANKRD11):c.3151_3152del (p.Glu1051fs)
NM_013275.6(ANKRD11):c.3931C>T (p.Arg1311Ter) rs2034353033
NM_013275.6(ANKRD11):c.5494_5495del (p.Arg1832fs) rs2151743944
NM_013275.6(ANKRD11):c.618del (p.His206fs) rs1597477691
NM_013275.6(ANKRD11):c.6807_6808del (p.Ala2270fs) rs1597435393
NM_013275.6(ANKRD11):c.744+1G>T
NM_013275.6(ANKRD11):c.7534C>T (p.Arg2512Trp) rs2033536147
NM_013275.6(ANKRD11):c.7590T>A (p.Cys2530Ter)
NM_013275.6(ANKRD11):c.7618C>T (p.Arg2540Trp) rs1555523386
NM_015100.4(POGZ):c.2646_2647del (p.Asn882fs) rs1553213060
NM_015100.4(POGZ):c.3121C>T (p.Gln1041Ter) rs1557865787
NM_015100.4(POGZ):c.3456_3457del (p.Glu1154fs) rs869320764
NM_015335.5(MED13L):c.2590A>T (p.Met864Leu) rs886039599
NM_015338.6(ASXL1):c.2461dup (p.Asp821fs)
NM_015338.6(ASXL1):c.4254_4260delinsCTCAC (p.Lys1419fs)
NM_015570.4(AUTS2):c.376C>T (p.Arg126Ter) rs1562957809
NM_015570.4(AUTS2):c.901C>T (p.Gln301Ter) rs1585645641
NM_018026.4(PACS1):c.607C>T (p.Arg203Trp) rs398123009
NM_031407.7(HUWE1):c.329G>A (p.Arg110Gln) rs1557036768
NM_152564.5(VPS13B):c.3881_3882del (p.Ile1294fs) rs2133609624
NM_152564.5(VPS13B):c.763-2118G>T
NM_152564.5(VPS13B):c.8206_8207dup (p.Phe2737fs)

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