ClinVar Miner

List of variants in gene HNF4A reported as likely benign for type 2 diabetes mellitus

Included ClinVar conditions (37):

Arterial calcification, generalized, of infancy, 1; Type 2 diabetes mellitus; Obesity; Hypophosphatemic rickets, autosomal recessive, 2; Hypopigmentation-punctate palmoplantar keratoderma syndrome
Cataract 41; Wolfram syndrome 1; Autosomal dominant nonsyndromic hearing loss 6; Type 2 diabetes mellitus; Wolfram-like syndrome
Diabetes mellitus type 1; Type 1 diabetes mellitus 20; Maturity-onset diabetes of the young type 3; Type 2 diabetes mellitus
Diabetes mellitus type 1; Type 1 diabetes mellitus 20; Maturity-onset diabetes of the young type 3; Type 2 diabetes mellitus; Hepatic adenomas, familial; Nonpapillary renal cell carcinoma
Diabetes mellitus, ketosis-prone; Maturity-onset diabetes of the young type 9; Type 2 diabetes mellitus
Diabetes mellitus, noninsulin-dependent, 1
Diabetes mellitus, noninsulin-dependent, association with
Diabetes mellitus, transient neonatal, 2; Hyperinsulinemic hypoglycemia, familial, 1; Leucine-induced hypoglycemia; Type 2 diabetes mellitus; Diabetes mellitus, permanent neonatal 3
Diabetes mellitus, transient neonatal, 3; Hyperinsulinemic hypoglycemia, familial, 2; Type 2 diabetes mellitus; Maturity-onset diabetes of the young type 13; Diabetes mellitus, permanent neonatal 2
Hyperinsulinemic hypoglycemia, familial, 1; Type 2 diabetes mellitus
Insulin resistance, severe, digenic
Maturity-onset diabetes of the young type 1; Type 2 diabetes mellitus
Maturity-onset diabetes of the young type 1; Type 2 diabetes mellitus; Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young
Maturity-onset diabetes of the young type 4; Pancreatic agenesis 1; Type 2 diabetes mellitus
Maturity-onset diabetes of the young type 4; Type 2 diabetes mellitus
Maturity-onset diabetes of the young type 6; Type 2 diabetes mellitus
Maturity-onset diabetes of the young type 9; Type 2 diabetes mellitus
PPARG-related familial partial lipodystrophy; Carotid intimal medial thickness 1; Type 2 diabetes mellitus; Obesity
PPARG-related familial partial lipodystrophy; Type 2 diabetes mellitus
Permanent neonatal diabetes mellitus; Diabetes mellitus, transient neonatal, 2; Hyperinsulinemic hypoglycemia, familial, 1; Leucine-induced hypoglycemia; Type 2 diabetes mellitus
Permanent neonatal diabetes mellitus; Diabetes mellitus, transient neonatal, 3; Hyperinsulinemic hypoglycemia, familial, 2; Type 2 diabetes mellitus; Maturity-onset diabetes of the young type 13
Permanent neonatal diabetes mellitus; Type 2 diabetes mellitus; Hyperinsulinism due to glucokinase deficiency; Maturity-onset diabetes of the young type 2
Permanent neonatal diabetes mellitus; Type 2 diabetes mellitus; Maturity-onset diabetes of the young type 2
Renal cysts and diabetes syndrome; Type 2 diabetes mellitus
Renal cysts and diabetes syndrome; Type 2 diabetes mellitus; Nonpapillary renal cell carcinoma
Type 2 diabetes mellitus
Type 2 diabetes mellitus; Fanconi-Bickel syndrome
Type 2 diabetes mellitus; High density lipoprotein cholesterol level quantitative trait locus 12; Hyperlipidemia due to hepatic triglyceride lipase deficiency
Type 2 diabetes mellitus; Hyperinsulinism due to glucokinase deficiency; Maturity-onset diabetes of the young type 2
Type 2 diabetes mellitus; Hyperinsulinism due to glucokinase deficiency; Maturity-onset diabetes of the young type 2; Permanent neonatal diabetes mellitus 1
Type 2 diabetes mellitus; Hypoinsulinemic hypoglycemia and body hemihypertrophy
Type 2 diabetes mellitus; Hypotrichosis 13; Wooly hair, autosomal recessive 3
Type 2 diabetes mellitus; Maturity-onset diabetes of the young type 13
Type 2 diabetes mellitus; Maturity-onset diabetes of the young type 2
Type 2 diabetes mellitus; Obesity; Hyperlipidemia; Diabetes mellitus; Hypertensive disorder; Class III obesity
Type 2 diabetes mellitus; Short stature; Cataract; Convex nasal ridge; Mask-like facies; Decreased body weight
Wolfram syndrome 1; Type 2 diabetes mellitus

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

Total variants: 13

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HGVS	dbSNP	gnomAD frequency
NM_175914.5(HNF4A):c.669A>G (p.Leu223=)	rs139591750	0.00425
NM_175914.5(HNF4A):c.1137C>T (p.Asn379=)	rs61737145	0.00384
NM_175914.5(HNF4A):c.744C>T (p.Asp248=)	rs6031592	0.00257
NM_175914.5(HNF4A):c.1032T>A (p.Ile344=)	rs145880201	0.00062
NM_175914.5(HNF4A):c.999C>T (p.Ile333=)	rs150247632	0.00045
NM_175914.5(HNF4A):c.921C>T (p.Asp307=)	rs151168174	0.00039
NM_175914.5(HNF4A):c.439G>A (p.Val147Ile)	rs142204928	0.00025
NM_175914.5(HNF4A):c.427-4G>A	rs146751799	0.00021
NM_175914.5(HNF4A):c.576C>T (p.Asp192=)	rs759574096	0.00019
NM_175914.5(HNF4A):c.1026C>T (p.Ala342=)	rs751892618	0.00004
NM_175914.5(HNF4A):c.468G>A (p.Ala156=)	rs758124162	0.00004
NM_175914.5(HNF4A):c.1064-18G>A	rs773235761	0.00003
NM_175914.5(HNF4A):c.912C>A (p.Arg304=)	rs760811566

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