ClinVar Miner

List of variants in gene LRRK2 reported as likely benign for Parkinson disease

Included ClinVar conditions (41):
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 266
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_198578.4(LRRK2):c.7155A>G (p.Gly2385=) rs33962975 0.11278
NM_198578.4(LRRK2):c.4624C>T (p.Pro1542Ser) rs33958906 0.03091
NM_198578.4(LRRK2):c.6844-14_6844-13insA rs150964683 0.01681
NM_198578.4(LRRK2):c.4317+12del rs200829235 0.01470
NM_198578.4(LRRK2):c.5509+20A>C rs11564134 0.01309
NM_198578.4(LRRK2):c.6241A>G (p.Asn2081Asp) rs33995883 0.01276
NM_198578.4(LRRK2):c.867C>T (p.Asn289=) rs17490713 0.01182
NM_198578.4(LRRK2):c.4937T>C (p.Met1646Thr) rs35303786 0.01047
NM_198578.4(LRRK2):c.3784C>G (p.Pro1262Ala) rs4640000 0.00717
NM_198578.4(LRRK2):c.4229C>T (p.Thr1410Met) rs72546327 0.00621
NM_198578.4(LRRK2):c.4541G>A (p.Arg1514Gln) rs35507033 0.00526
NM_198578.4(LRRK2):c.5163A>G (p.Ser1721=) rs79909111 0.00293
NM_198578.4(LRRK2):c.1000G>A (p.Glu334Lys) rs78501232 0.00266
NM_198578.4(LRRK2):c.5510-9A>G rs41286460 0.00252
NM_198578.4(LRRK2):c.356T>C (p.Leu119Pro) rs33995463 0.00140
NM_198578.4(LRRK2):c.3333G>T (p.Gln1111His) rs78365431 0.00121
NM_198578.4(LRRK2):c.6510C>A (p.Gly2170=) rs34869625 0.00101
NM_198578.4(LRRK2):c.3777+7C>T rs41286480 0.00097
NM_198578.4(LRRK2):c.2378G>T (p.Arg793Met) rs35173587 0.00085
NM_198578.4(LRRK2):c.347A>G (p.Gln116Arg) rs144883021 0.00085
NM_198578.4(LRRK2):c.347+2T>C rs141221000 0.00084
NM_198578.4(LRRK2):c.5606T>C (p.Met1869Thr) rs35602796 0.00060
NM_198578.4(LRRK2):c.7153G>A (p.Gly2385Arg) rs34778348 0.00058
NM_198578.4(LRRK2):c.6566A>G (p.Tyr2189Cys) rs35658131 0.00055
NM_198578.4(LRRK2):c.4111A>G (p.Ile1371Val) rs17466213 0.00050
NM_198578.4(LRRK2):c.1383T>C (p.Ser461=) rs35847451 0.00047
NM_198578.4(LRRK2):c.2697A>C (p.Glu899Asp) rs148113070 0.00039
NM_198578.4(LRRK2):c.2481T>C (p.Ser827=) rs76890302 0.00038
NM_198578.4(LRRK2):c.7429C>T (p.Arg2477Trp) rs138780308 0.00035
NM_198578.4(LRRK2):c.319A>G (p.Asn107Asp) rs141177841 0.00027
NM_198578.4(LRRK2):c.4536+3A>G rs41286476 0.00027
NM_198578.4(LRRK2):c.364C>T (p.Leu122=) rs41286468 0.00026
NM_198578.4(LRRK2):c.1256C>T (p.Ala419Val) rs34594498 0.00025
NM_198578.4(LRRK2):c.7462+15G>C rs200420425 0.00025
NM_198578.4(LRRK2):c.5467C>A (p.Gln1823Lys) rs72547980 0.00024
NM_198578.4(LRRK2):c.2264C>T (p.Pro755Leu) rs34410987 0.00023
NM_198578.4(LRRK2):c.2594C>T (p.Ser865Phe) rs142700458 0.00023
NM_198578.4(LRRK2):c.6801C>T (p.Thr2267=) rs148143226 0.00023
NM_198578.4(LRRK2):c.1324C>T (p.His442Tyr) rs568593066 0.00022
NM_198578.4(LRRK2):c.5799A>T (p.Ile1933=) rs139746572 0.00021
NM_198578.4(LRRK2):c.7036T>C (p.Tyr2346His) rs138264225 0.00021
NM_198578.4(LRRK2):c.*1388T>C rs200410756 0.00020
NM_198578.4(LRRK2):c.2769G>C (p.Gln923His) rs58559150 0.00020
NM_198578.4(LRRK2):c.3429C>T (p.Ser1143=) rs142989436 0.00019
NM_198578.4(LRRK2):c.45T>C (p.Thr15=) rs142399623 0.00019
NM_198578.4(LRRK2):c.3342A>G (p.Leu1114=) rs35808389 0.00016
NM_198578.4(LRRK2):c.6054C>T (p.Tyr2018=) rs150219613 0.00015
NM_198578.4(LRRK2):c.177T>A (p.Asn59Lys) rs150422099 0.00012
NM_198578.4(LRRK2):c.5217C>T (p.Tyr1739=) rs200107211 0.00012
NM_198578.4(LRRK2):c.2229T>G (p.Ser743=) rs200425243 0.00011
NM_198578.4(LRRK2):c.632C>T (p.Ala211Val) rs112794616 0.00011
NM_198578.4(LRRK2):c.66G>A (p.Arg22=) rs151283507 0.00010
NM_198578.4(LRRK2):c.1073C>T (p.Thr358Met) rs141262110 0.00009
NM_198578.4(LRRK2):c.3741A>G (p.Val1247=) rs759427195 0.00009
NM_198578.4(LRRK2):c.3960G>T (p.Arg1320Ser) rs77018758 0.00009
NM_198578.4(LRRK2):c.5412A>G (p.Gly1804=) rs200951081 0.00009
NM_198578.4(LRRK2):c.5178A>G (p.Ala1726=) rs200185983 0.00007
NM_198578.4(LRRK2):c.344A>C (p.His115Pro) rs201439315 0.00006
NM_198578.4(LRRK2):c.4162C>A (p.Leu1388Ile) rs201453370 0.00006
NM_198578.4(LRRK2):c.4323C>T (p.Arg1441=) rs112998035 0.00006
NM_198578.4(LRRK2):c.4943A>G (p.Gln1648Arg) rs200143418 0.00006
NM_198578.4(LRRK2):c.5657-9T>C rs201705389 0.00006
NM_198578.4(LRRK2):c.699G>A (p.Ala233=) rs577327683 0.00006
NM_198578.4(LRRK2):c.1476A>G (p.Lys492=) rs748115010 0.00005
NM_198578.4(LRRK2):c.4881G>A (p.Ser1627=) rs767307387 0.00005
NM_198578.4(LRRK2):c.2689+17A>G rs938086487 0.00004
NM_198578.4(LRRK2):c.2761G>A (p.Val921Ile) rs145926545 0.00004
NM_198578.4(LRRK2):c.2809-19A>G rs747106690 0.00004
NM_198578.4(LRRK2):c.3969A>G (p.Gln1323=) rs372245035 0.00004
NM_198578.4(LRRK2):c.3993T>G (p.Pro1331=) rs141293633 0.00004
NM_198578.4(LRRK2):c.5154C>T (p.Tyr1718=) rs150450334 0.00004
NM_198578.4(LRRK2):c.6900G>A (p.Leu2300=) rs906855468 0.00004
NM_198578.4(LRRK2):c.750T>C (p.Tyr250=) rs139971538 0.00004
NM_198578.4(LRRK2):c.1446A>G (p.Ala482=) rs757454147 0.00003
NM_198578.4(LRRK2):c.1517G>A (p.Arg506Gln) rs202009639 0.00003
NM_198578.4(LRRK2):c.2191T>C (p.Leu731=) rs201126499 0.00003
NM_198578.4(LRRK2):c.4077A>G (p.Lys1359=) rs1333671057 0.00003
NM_198578.4(LRRK2):c.5166G>A (p.Gly1722=) rs200905003 0.00003
NM_198578.4(LRRK2):c.5931C>T (p.His1977=) rs201119482 0.00003
NM_198578.4(LRRK2):c.6382-8T>C rs199695835 0.00003
NM_198578.4(LRRK2):c.6384C>G (p.Val2128=) rs145225800 0.00003
NM_198578.4(LRRK2):c.7062C>T (p.Ile2354=) rs768811495 0.00003
NM_198578.4(LRRK2):c.1092G>A (p.Lys364=) rs200462425 0.00002
NM_198578.4(LRRK2):c.1891C>T (p.Leu631=) rs757654557 0.00002
NM_198578.4(LRRK2):c.2017T>C (p.Leu673=) rs1218456602 0.00002
NM_198578.4(LRRK2):c.2070+9T>A rs201389324 0.00002
NM_198578.4(LRRK2):c.237+20T>A rs201200707 0.00002
NM_198578.4(LRRK2):c.436+15T>C rs200953980 0.00002
NM_198578.4(LRRK2):c.4473C>T (p.Thr1491=) rs144754773 0.00002
NM_198578.4(LRRK2):c.4608G>A (p.Ser1536=) rs202073944 0.00002
NM_198578.4(LRRK2):c.6582T>C (p.Val2194=) rs773085638 0.00002
NM_198578.4(LRRK2):c.839-4T>G rs748213808 0.00002
NM_198578.4(LRRK2):c.1182-5G>A rs898586557 0.00001
NM_198578.4(LRRK2):c.2382G>T (p.Leu794=) rs1171219491 0.00001
NM_198578.4(LRRK2):c.2579G>A (p.Ser860Asn) rs747546304 0.00001
NM_198578.4(LRRK2):c.2690-14C>A rs1276064023 0.00001
NM_198578.4(LRRK2):c.2809-18T>C rs1453324975 0.00001
NM_198578.4(LRRK2):c.2864C>T (p.Ser955Leu) rs189460764 0.00001
NM_198578.4(LRRK2):c.2878+14T>C rs1944322347 0.00001
NM_198578.4(LRRK2):c.3028T>C (p.Leu1010=) rs199635806 0.00001
NM_198578.4(LRRK2):c.3435A>G (p.Ser1145=) rs886049359 0.00001
NM_198578.4(LRRK2):c.347+11T>C rs181145872 0.00001
NM_198578.4(LRRK2):c.3867G>A (p.Gly1289=) rs200798306 0.00001
NM_198578.4(LRRK2):c.3960-5A>G rs764870651 0.00001
NM_198578.4(LRRK2):c.4168C>T (p.Leu1390=) rs762465056 0.00001
NM_198578.4(LRRK2):c.4189+14T>C rs1324322233 0.00001
NM_198578.4(LRRK2):c.4337C>T (p.Pro1446Leu) rs74681492 0.00001
NM_198578.4(LRRK2):c.4401T>C (p.Ser1467=) rs370239119 0.00001
NM_198578.4(LRRK2):c.4827+6T>A rs550610903 0.00001
NM_198578.4(LRRK2):c.4828-11G>A rs202211993 0.00001
NM_198578.4(LRRK2):c.4845G>A (p.Val1615=) rs774887321 0.00001
NM_198578.4(LRRK2):c.5171-9A>G rs78243554 0.00001
NM_198578.4(LRRK2):c.5454T>C (p.Asp1818=) rs968750174 0.00001
NM_198578.4(LRRK2):c.572-14C>T rs202012106 0.00001
NM_198578.4(LRRK2):c.5948+8G>C rs756480297 0.00001
NM_198578.4(LRRK2):c.5982C>T (p.Asp1994=) rs1329710738 0.00001
NM_198578.4(LRRK2):c.6012A>G (p.Thr2004=) rs758448437 0.00001
NM_198578.4(LRRK2):c.6702G>A (p.Lys2234=) rs1265078699 0.00001
NM_198578.4(LRRK2):c.959-5T>C rs202079711 0.00001
NM_198578.4(LRRK2):c.*1429C>G rs142051987
NM_198578.4(LRRK2):c.*936del rs367772598
NM_198578.4(LRRK2):c.*942T>C rs182229935
NM_198578.4(LRRK2):c.1044T>C (p.Phe348=)
NM_198578.4(LRRK2):c.114C>A (p.Ile38=) rs1592124610
NM_198578.4(LRRK2):c.1288+12G>A
NM_198578.4(LRRK2):c.1288+17G>A
NM_198578.4(LRRK2):c.1288+9T>A rs2136486183
NM_198578.4(LRRK2):c.1299A>G (p.Arg433=) rs2136507752
NM_198578.4(LRRK2):c.1404T>C (p.His468=) rs745971400
NM_198578.4(LRRK2):c.1470T>C (p.Val490=)
NM_198578.4(LRRK2):c.1497A>C (p.Pro499=)
NM_198578.4(LRRK2):c.151+19A>G rs2136364549
NM_198578.4(LRRK2):c.151+20C>T
NM_198578.4(LRRK2):c.1512G>A (p.Ala504=)
NM_198578.4(LRRK2):c.1566G>A (p.Glu522=)
NM_198578.4(LRRK2):c.1657-20G>A
NM_198578.4(LRRK2):c.1845A>T (p.Thr615=)
NM_198578.4(LRRK2):c.186G>A (p.Val62=)
NM_198578.4(LRRK2):c.1902C>T (p.Ser634=)
NM_198578.4(LRRK2):c.1941+15T>C
NM_198578.4(LRRK2):c.1980A>G (p.Ala660=) rs1014317397
NM_198578.4(LRRK2):c.1993C>T (p.Leu665=)
NM_198578.4(LRRK2):c.201C>T (p.Val67=) rs2136366558
NM_198578.4(LRRK2):c.2079C>T (p.Asn693=)
NM_198578.4(LRRK2):c.2097T>C (p.Phe699=)
NM_198578.4(LRRK2):c.2121C>T (p.Tyr707=)
NM_198578.4(LRRK2):c.2148G>A (p.Ala716=)
NM_198578.4(LRRK2):c.2269T>C (p.Leu757=)
NM_198578.4(LRRK2):c.2271G>A (p.Leu757=)
NM_198578.4(LRRK2):c.2292T>C (p.Ser764=)
NM_198578.4(LRRK2):c.2373A>G (p.Leu791=)
NM_198578.4(LRRK2):c.2385C>T (p.Ala795=)
NM_198578.4(LRRK2):c.2500+9C>T
NM_198578.4(LRRK2):c.2501-13C>T rs2136674340
NM_198578.4(LRRK2):c.2517A>G (p.Leu839=) rs1592226567
NM_198578.4(LRRK2):c.2553T>C (p.Ala851=)
NM_198578.4(LRRK2):c.255G>A (p.Leu85=)
NM_198578.4(LRRK2):c.2571C>T (p.Ala857=)
NM_198578.4(LRRK2):c.2577C>A (p.Gly859=)
NM_198578.4(LRRK2):c.2583T>C (p.Asp861=)
NM_198578.4(LRRK2):c.2689+12A>G rs200290369
NM_198578.4(LRRK2):c.2689+12A>T rs200290369
NM_198578.4(LRRK2):c.2689+19_2689+20dup rs66810434
NM_198578.4(LRRK2):c.2689+20A>C
NM_198578.4(LRRK2):c.2689+20dup rs66810434
NM_198578.4(LRRK2):c.2760C>T (p.Ala920=)
NM_198578.4(LRRK2):c.2774G>A (p.Cys925Tyr)
NM_198578.4(LRRK2):c.2778A>G (p.Ser926=) rs937911118
NM_198578.4(LRRK2):c.2811G>A (p.Gly937=)
NM_198578.4(LRRK2):c.2873C>T (p.Ser958Leu)
NM_198578.4(LRRK2):c.2874A>T (p.Ser958=) rs2136715656
NM_198578.4(LRRK2):c.2880G>A (p.Arg960=) rs199847386
NM_198578.4(LRRK2):c.3156T>A (p.Ser1052=)
NM_198578.4(LRRK2):c.3348-20A>T rs1459763604
NM_198578.4(LRRK2):c.3432A>G (p.Leu1144=) rs201121016
NM_198578.4(LRRK2):c.347+13G>A
NM_198578.4(LRRK2):c.347+16A>G
NM_198578.4(LRRK2):c.347+20A>G
NM_198578.4(LRRK2):c.3496+18G>A
NM_198578.4(LRRK2):c.3497-8del rs201739149
NM_198578.4(LRRK2):c.3591-14G>C
NM_198578.4(LRRK2):c.3777+13T>C
NM_198578.4(LRRK2):c.3777+9A>G
NM_198578.4(LRRK2):c.3870A>G (p.Lys1290=)
NM_198578.4(LRRK2):c.3906G>A (p.Leu1302=) rs144488089
NM_198578.4(LRRK2):c.3906G>T (p.Leu1302=)
NM_198578.4(LRRK2):c.3936A>T (p.Gly1312=)
NM_198578.4(LRRK2):c.3959+9A>T
NM_198578.4(LRRK2):c.3973C>A (p.Arg1325=)
NM_198578.4(LRRK2):c.4101C>T (p.Ala1367=) rs2136815209
NM_198578.4(LRRK2):c.4167C>T (p.Val1389=)
NM_198578.4(LRRK2):c.4193G>A (p.Arg1398His) rs7133914
NM_198578.4(LRRK2):c.4200A>G (p.Glu1400=)
NM_198578.4(LRRK2):c.4203C>T (p.Phe1401=) rs2136818823
NM_198578.4(LRRK2):c.4230G>A (p.Thr1410=)
NM_198578.4(LRRK2):c.4347C>T (p.Leu1449=)
NM_198578.4(LRRK2):c.4383A>G (p.Gln1461=)
NM_198578.4(LRRK2):c.438T>C (p.Gly146=)
NM_198578.4(LRRK2):c.4447C>A (p.Arg1483=) rs114908017
NM_198578.4(LRRK2):c.4537-17C>A
NM_198578.4(LRRK2):c.4548G>A (p.Gln1516=)
NM_198578.4(LRRK2):c.4638C>T (p.Pro1546=)
NM_198578.4(LRRK2):c.4713C>T (p.His1571=)
NM_198578.4(LRRK2):c.4739-4A>G
NM_198578.4(LRRK2):c.4739-5T>C
NM_198578.4(LRRK2):c.4827+9C>T
NM_198578.4(LRRK2):c.4828-17T>C
NM_198578.4(LRRK2):c.4831T>C (p.Leu1611=) rs2136879452
NM_198578.4(LRRK2):c.4883G>A (p.Arg1628His) rs33949390
NM_198578.4(LRRK2):c.4883G>C (p.Arg1628Pro) rs33949390
NM_198578.4(LRRK2):c.5163A>C (p.Ser1721=) rs79909111
NM_198578.4(LRRK2):c.5170+14_5170+28del rs771022342
NM_198578.4(LRRK2):c.5318-4G>A
NM_198578.4(LRRK2):c.5550T>C (p.Ile1850=) rs2136894844
NM_198578.4(LRRK2):c.5658T>G (p.Gly1886=)
NM_198578.4(LRRK2):c.5676A>G (p.Ser1892=)
NM_198578.4(LRRK2):c.5691C>G (p.Ala1897=)
NM_198578.4(LRRK2):c.5691C>T (p.Ala1897=) rs200436043
NM_198578.4(LRRK2):c.5697A>G (p.Glu1899=)
NM_198578.4(LRRK2):c.571+18del
NM_198578.4(LRRK2):c.5713G>C (p.Val1905Leu) rs754436306
NM_198578.4(LRRK2):c.5749T>C (p.Leu1917=)
NM_198578.4(LRRK2):c.5758-10A>G
NM_198578.4(LRRK2):c.5758-11G>A
NM_198578.4(LRRK2):c.5820T>C (p.Ile1940=)
NM_198578.4(LRRK2):c.5838G>A (p.Val1946=) rs2136938127
NM_198578.4(LRRK2):c.5943T>C (p.Gly1981=)
NM_198578.4(LRRK2):c.606C>T (p.Asn202=) rs199854074
NM_198578.4(LRRK2):c.6109+14T>C
NM_198578.4(LRRK2):c.6109+19C>T rs2136954887
NM_198578.4(LRRK2):c.6110-8A>G
NM_198578.4(LRRK2):c.6171T>C (p.Tyr2057=)
NM_198578.4(LRRK2):c.6280+14T>C
NM_198578.4(LRRK2):c.6336A>G (p.Lys2112=)
NM_198578.4(LRRK2):c.63C>A (p.Val21=)
NM_198578.4(LRRK2):c.6423G>A (p.Thr2141=) rs369306296
NM_198578.4(LRRK2):c.6522C>T (p.Thr2174=)
NM_198578.4(LRRK2):c.6621T>C (p.Leu2207=)
NM_198578.4(LRRK2):c.6711C>G (p.Thr2237=)
NM_198578.4(LRRK2):c.6714A>T (p.Leu2238=) rs202244108
NM_198578.4(LRRK2):c.6771-15del
NM_198578.4(LRRK2):c.67C>T (p.Leu23=)
NM_198578.4(LRRK2):c.6843+12A>G
NM_198578.4(LRRK2):c.6843+8T>C
NM_198578.4(LRRK2):c.6844-15_6844-14insC
NM_198578.4(LRRK2):c.6898T>C (p.Leu2300=)
NM_198578.4(LRRK2):c.6930G>A (p.Thr2310=)
NM_198578.4(LRRK2):c.693C>T (p.Ser231=) rs1592146379
NM_198578.4(LRRK2):c.7029-10T>C
NM_198578.4(LRRK2):c.7029-16T>A
NM_198578.4(LRRK2):c.7029-4G>T
NM_198578.4(LRRK2):c.706+10A>C
NM_198578.4(LRRK2):c.707-13T>C rs1368131495
NM_198578.4(LRRK2):c.707-14C>T rs777734222
NM_198578.4(LRRK2):c.707-15T>A
NM_198578.4(LRRK2):c.7089C>T (p.Leu2363=)
NM_198578.4(LRRK2):c.7296C>G (p.Gly2432=) rs199964631
NM_198578.4(LRRK2):c.7463-8T>C
NM_198578.4(LRRK2):c.7482C>T (p.Thr2494=)
NM_198578.4(LRRK2):c.7521A>G (p.Leu2507=)
NM_198578.4(LRRK2):c.75T>C (p.Asn25=) rs1592124542
NM_198578.4(LRRK2):c.838+10T>A
NM_198578.4(LRRK2):c.909A>G (p.Pro303=)
NM_198578.4(LRRK2):c.936G>T (p.Ala312=) rs41286466
NM_198578.4(LRRK2):c.959-13A>C
NM_198578.4(LRRK2):c.972C>T (p.Phe324=)

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